Rorug02G0230700

B3 DNA binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002989
Physical Location & Seq
Reverse (-)
22986663 .. 22989423
2761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0230700.1

Sequence Viewer

Length: 735 bp
ATGGAAGCCGGATTCTTCAGCTCTTCAATCCTCACCCAAGACGAGTTGAAGAAAATCGCCGCCTACAAGGCCGTCGAGCACGTCGAGTCCGGCATGATCCTCGGCCTCGGCTCCGGCTCCACCGTCAAGCACGCCGTCGACCGCATCGGCGAGCTTCTACAACTCGGCAAACTCCACAACATCATCGGAATCACCACCTCCCAAAACACCCACCAACAAGCCCTCTCCCTCGGAATCCCACTCTCCGACCTCGACGACCACCCCGCCCTCGATCTCGCCATCGACGGCGCCGACGAGGTCGACCCCCACCTCAACCTAGTCAAGGGCCGCTGCGGGTCCCTCCTCAGAGAGAAAATGGTGGAGGGCGCGTGTAAGAAGTTCGTCGTCATCGTCGACGAGTCCAAGCTCGTTGACCACCTCGGCGGCTCCGGCCTGGCCATGCCGGTGGAGGTGGTGCCGTTCTGCTGGAAATTCACGGCCAAAATGCTGCAGGACTTGTTCCGAAACTCCGGCTGCGTCGCGAAGCTCAAGTGTGAGGAGAGTGGGGAGCCGTTTGTGACGGATAATGGGAATTACATTGTGGATATGTATTTCAAGAAGGATATTGGGGATTTGAGAGCTGCAAGTGAGGCCATTTTGCGGCTCGCCGGAGTTGTGGAGCATGGGATGTTTCTGGATATGGCGACTACTGTGATTGTGGCGAGGGAGCTTGGGATCACGGTGAAGAACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

244

Amino Acids

26.39

Weight (kDa)

5.48

Isoelectric Point (pI)

30.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rib_5-P_isom_A PF06026 63 - 236 6.2e-60 Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 287, 454
AccI GTMKAC 3 cut(s) 138, 300, 393
AccII CGCG 2 cut(s) 368, 521
AciI CCGC 7 cut(s) 60, 142, 264, 328, 333, 423, 640
AclWI GGATC 2 cut(s) 91, 722
AcoI YGGCCR 2 cut(s) 435, 477
AcsI RAATTY 1 cut(s) 470
AcyI GRCGYC 1 cut(s) 288
AfiI CCNNNNNNNGG 2 cut(s) 322, 639
AgsI TTSAA 3 cut(s) 27, 49, 595
AjiI CACGTC 1 cut(s) 82
AjnI CCWGG 1 cut(s) 432
AluBI AGCT 6 cut(s) 21, 154, 406, 526, 620, 709
AluI AGCT 6 cut(s) 21, 154, 406, 526, 620, 709
Alw21I GWGCWC 1 cut(s) 81
AlwI GGATC 2 cut(s) 91, 722
AoxI GGCC 7 cut(s) 69, 103, 325, 430, 435, 477, 630
ApeKI GCWGC 4 cut(s) 330, 487, 513, 620
ApoI RAATTY 1 cut(s) 470
AspLEI GCGC 2 cut(s) 290, 368
AspS9I GGNCC 2 cut(s) 325, 336
AsuHPI GGTGA 3 cut(s) 25, 184, 733
AvaII GGWCC 1 cut(s) 336
BalI TGGCCA 1 cut(s) 437
BanI GGYRCC 2 cut(s) 287, 454
Bbv12I GWGCWC 1 cut(s) 81
BbvI GCAGC 4 cut(s) 317, 474, 500, 607
BccI CCATC 1 cut(s) 287
BceAI ACGGC 6 cut(s) 56, 119, 301, 442, 492, 535
BcgI CGANNNNNNTGC 2 cut(s) 82, 116
BciT130I CCWGG 1 cut(s) 434
BfaI CTAG 1 cut(s) 317
BfmI CTRYAG 1 cut(s) 488
BfoI RGCGCY 1 cut(s) 291
BglI GCCNNNNNGGC 1 cut(s) 68
BisI GCNGC 8 cut(s) 60, 328, 331, 424, 488, 514, 621, 641
BlsI GCNGC 8 cut(s) 61, 329, 332, 425, 489, 515, 622, 642
Bme1390I CCNGG 1 cut(s) 434
Bme18I GGWCC 1 cut(s) 336
BmgBI CACGTC 1 cut(s) 82
BmgT120I GGNCC 2 cut(s) 325, 336
BmiI GGNNCC 8 cut(s) 112, 118, 289, 337, 338, 427, 456, 549
BmrFI CCNGG 1 cut(s) 434
BmsI GCATC 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 512
BsaHI GRCGYC 1 cut(s) 288
BsaJI CCNNGG 4 cut(s) 100, 106, 229, 418
BsaXI ACNNNNNCTCC 2 cut(s) 353, 383
Bsc4I CCNNNNNNNGG 2 cut(s) 322, 639
Bse118I RCCGGY 1 cut(s) 442
BseBI CCWGG 1 cut(s) 434
BseDI CCNNGG 4 cut(s) 100, 106, 229, 418
BseGI GGATG 1 cut(s) 672
BseLI CCNNNNNNNGG 2 cut(s) 322, 639
BseMII CTCAG 1 cut(s) 358
BseRI GAGGAG 2 cut(s) 332, 551
BseXI GCAGC 4 cut(s) 317, 474, 500, 607
Bsh1236I CGCG 2 cut(s) 368, 521
Bsh1285I CGRYCG 1 cut(s) 142
BshFI GGCC 7 cut(s) 71, 105, 327, 432, 437, 479, 632
BshNI GGYRCC 2 cut(s) 287, 454
BsiEI CGRYCG 1 cut(s) 142
BsiHKAI GWGCWC 1 cut(s) 81
BsiSI CCGG 7 cut(s) 9, 90, 114, 429, 443, 510, 648
BslFI GGGAC 1 cut(s) 322
BslI CCNNNNNNNGG 2 cut(s) 322, 639
BsmFI GGGAC 1 cut(s) 322
BsnI GGCC 7 cut(s) 71, 105, 327, 432, 437, 479, 632
Bsp1286I GDGCHC 1 cut(s) 81
Bsp143I GATC 3 cut(s) 96, 271, 714
Bsp68I TCGCGA 1 cut(s) 521
BspACI CCGC 7 cut(s) 60, 142, 264, 328, 333, 423, 640
BspANI GGCC 7 cut(s) 71, 105, 327, 432, 437, 479, 632
BspCNI CTCAG 1 cut(s) 357
BspFNI CGCG 2 cut(s) 368, 521
BspLI GGNNCC 8 cut(s) 112, 118, 289, 337, 338, 427, 456, 549
BspMAI CTGCAG 1 cut(s) 492
BspPI GGATC 2 cut(s) 91, 722
BspQI GCTCTTC 1 cut(s) 28
BspT107I GGYRCC 2 cut(s) 287, 454
BsrFI RCCGGY 1 cut(s) 442
BssAI RCCGGY 1 cut(s) 442
BssECI CCNNGG 4 cut(s) 100, 106, 229, 418
BssMI GATC 3 cut(s) 96, 271, 714
BssNI GRCGYC 1 cut(s) 288
Bst2UI CCWGG 1 cut(s) 434
Bst4CI ACNGT 3 cut(s) 124, 691, 721
Bst6I CTCTTC 1 cut(s) 28
BstACI GRCGYC 1 cut(s) 288
BstC8I GCNNGC 3 cut(s) 132, 152, 645
BstDEI CTNAG 1 cut(s) 344
BstENI CCTNNNNNAGG 1 cut(s) 320
BstF5I GGATG 1 cut(s) 672
BstFNI CGCG 2 cut(s) 368, 521
BstH2I RGCGCY 1 cut(s) 291
BstHHI GCGC 2 cut(s) 290, 368
BstKTI GATC 3 cut(s) 99, 274, 717
BstMBI GATC 3 cut(s) 96, 271, 714
BstMCI CGRYCG 1 cut(s) 142
BstMWI GCNNNNNNNGC 3 cut(s) 68, 429, 629
BstNI CCWGG 1 cut(s) 434
BstSCI CCNGG 1 cut(s) 432
BstSFI CTRYAG 1 cut(s) 488
BstUI CGCG 2 cut(s) 368, 521
BstV1I GCAGC 4 cut(s) 317, 474, 500, 607
BstXI CCANNNNNNTGG 1 cut(s) 445
BsuRI GGCC 7 cut(s) 71, 105, 327, 432, 437, 479, 632
BtrI CACGTC 1 cut(s) 82
BtsCI GGATG 1 cut(s) 672
BtuMI TCGCGA 1 cut(s) 521
Cac8I GCNNGC 3 cut(s) 132, 152, 645
CfoI GCGC 2 cut(s) 290, 368
Cfr10I RCCGGY 1 cut(s) 442
Cfr13I GGNCC 2 cut(s) 325, 336
CseI GACGC 1 cut(s) 505
CviAII CATG 3 cut(s) 94, 439, 662
DdeI CTNAG 1 cut(s) 344
DinI GGCGCC 1 cut(s) 289
DpnI GATC 3 cut(s) 98, 273, 716
DpnII GATC 3 cut(s) 96, 271, 714
EaeI YGGCCR 2 cut(s) 435, 477
Eam1104I CTCTTC 1 cut(s) 28
EarI CTCTTC 1 cut(s) 28
Eco47I GGWCC 1 cut(s) 336
EcoNI CCTNNNNNAGG 1 cut(s) 320
EcoO109I RGGNCCY 1 cut(s) 336
EcoRII CCWGG 1 cut(s) 432
EgeI GGCGCC 1 cut(s) 289
EheI GGCGCC 1 cut(s) 289
FaeI CATG 3 cut(s) 97, 442, 665
FaiI YATR 5 cut(s) 95, 440, 587, 663, 680
FaqI GGGAC 1 cut(s) 322
FatI CATG 3 cut(s) 93, 438, 661
FauI CCCGC 2 cut(s) 271, 326
FblI GTMKAC 3 cut(s) 138, 300, 393
Fnu4HI GCNGC 8 cut(s) 60, 328, 331, 424, 488, 514, 621, 641
FokI GGATG 1 cut(s) 679
Fsp4HI GCNGC 8 cut(s) 60, 328, 331, 424, 488, 514, 621, 641
FspBI CTAG 1 cut(s) 317
GlaI GCGC 2 cut(s) 289, 367
GluI GCNGC 8 cut(s) 60, 328, 331, 424, 488, 514, 621, 641
HaeII RGCGCY 1 cut(s) 291
HaeIII GGCC 7 cut(s) 71, 105, 327, 432, 437, 479, 632
HapII CCGG 7 cut(s) 9, 90, 114, 429, 443, 510, 648
HgaI GACGC 1 cut(s) 505
HhaI GCGC 2 cut(s) 290, 368
Hin1I GRCGYC 1 cut(s) 288
Hin1II CATG 3 cut(s) 97, 442, 665
Hin6I GCGC 2 cut(s) 288, 366
HinP1I GCGC 2 cut(s) 288, 366
HincII GTYRAC 4 cut(s) 139, 301, 394, 412
HindII GTYRAC 4 cut(s) 139, 301, 394, 412
HinfI GANTC 5 cut(s) 12, 86, 189, 234, 398
HpaII CCGG 7 cut(s) 9, 90, 114, 429, 443, 510, 648
HphI GGTGA 3 cut(s) 25, 184, 733
Hpy166II GTNNAC 4 cut(s) 139, 301, 394, 412
Hpy188I TCNGA 5 cut(s) 188, 233, 247, 347, 503
Hpy188III TCNNGA 3 cut(s) 520, 595, 674
Hpy8I GTNNAC 4 cut(s) 139, 301, 394, 412
HpyAV CCTTC 1 cut(s) 592
HpyCH4III ACNGT 3 cut(s) 124, 691, 721
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 2 cut(s) 490, 623
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 429, 629
HpyF3I CTNAG 1 cut(s) 344
HpySE526I ACGT 1 cut(s) 81
Hsp92I GRCGYC 1 cut(s) 288
Hsp92II CATG 3 cut(s) 97, 442, 665
HspAI GCGC 2 cut(s) 288, 366
KasI GGCGCC 1 cut(s) 287
KflI GGGWCCC 1 cut(s) 336
Kzo9I GATC 3 cut(s) 96, 271, 714
LguI GCTCTTC 1 cut(s) 28
LmnI GCTCC 6 cut(s) 116, 122, 431, 547, 658, 706
Lsp1109I GCAGC 4 cut(s) 317, 474, 500, 607
LweI GCATC 1 cut(s) 153
MaeI CTAG 1 cut(s) 317
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 556
MalI GATC 3 cut(s) 98, 273, 716
MboI GATC 3 cut(s) 96, 271, 714
MboII GAAGA 3 cut(s) 7, 15, 61
MhlI GDGCHC 1 cut(s) 81
MlsI TGGCCA 1 cut(s) 437
MluCI AATT 2 cut(s) 470, 571
MluNI TGGCCA 1 cut(s) 437
Mly113I GGCGCC 1 cut(s) 288
MlyI GAGTC 2 cut(s) 95, 407
MmeI TCCRAC 1 cut(s) 270
Mox20I TGGCCA 1 cut(s) 437
MscI TGGCCA 1 cut(s) 437
MslI CAYNNNNRTG 1 cut(s) 443
Msp20I TGGCCA 1 cut(s) 437
MspA1I CMGCKG 1 cut(s) 330
MspI CCGG 7 cut(s) 9, 90, 114, 429, 443, 510, 648
MspR9I CCNGG 1 cut(s) 434
MvaI CCWGG 1 cut(s) 434
MvnI CGCG 2 cut(s) 368, 521
MwoI GCNNNNNNNGC 3 cut(s) 68, 429, 629
NarI GGCGCC 1 cut(s) 288
NdeII GATC 3 cut(s) 96, 271, 714
NlaIII CATG 3 cut(s) 97, 442, 665
NlaIV GGNNCC 8 cut(s) 112, 118, 289, 337, 338, 427, 456, 549
NmeAIII GCCGAG 4 cut(s) 81, 87, 144, 399
NmuCI GTSAC 1 cut(s) 556
NruI TCGCGA 1 cut(s) 521
PciSI GCTCTTC 1 cut(s) 28
PcsI WCGNNNNNNNCGW 5 cut(s) 81, 288, 291, 387, 390
PfeI GAWTC 3 cut(s) 12, 189, 234
PflFI GACNNNGTC 1 cut(s) 296
PkrI GCNGC 8 cut(s) 61, 329, 332, 425, 489, 515, 622, 642
PleI GAGTC 2 cut(s) 94, 406
PluTI GGCGCC 1 cut(s) 291
PpsI GAGTC 2 cut(s) 94, 406
PpuMI RGGWCCY 1 cut(s) 336
Psp5II RGGWCCY 1 cut(s) 336
Psp6I CCWGG 1 cut(s) 432
PspGI CCWGG 1 cut(s) 432
PspN4I GGNNCC 8 cut(s) 112, 118, 289, 337, 338, 427, 456, 549
PspPI GGNCC 2 cut(s) 325, 336
PspPPI RGGWCCY 1 cut(s) 336
PstI CTGCAG 1 cut(s) 492
PsyI GACNNNGTC 1 cut(s) 296
RruI TCGCGA 1 cut(s) 521
RseI CAYNNNNRTG 1 cut(s) 443
SalI GTCGAC 3 cut(s) 137, 299, 392
SapI GCTCTTC 1 cut(s) 28
SatI GCNGC 8 cut(s) 60, 328, 331, 424, 488, 514, 621, 641
Sau3AI GATC 3 cut(s) 96, 271, 714
Sau96I GGNCC 2 cut(s) 325, 336
SchI GAGTC 2 cut(s) 95, 407
ScrFI CCNGG 1 cut(s) 434
SduI GDGCHC 1 cut(s) 81
SfaNI GCATC 1 cut(s) 153
SfcI CTRYAG 1 cut(s) 488
SfoI GGCGCC 1 cut(s) 289
SgrDI CGTCGACG 1 cut(s) 392
SinI GGWCC 1 cut(s) 336
SmiMI CAYNNNNRTG 1 cut(s) 443
SmlI CTYRAG 1 cut(s) 527
SmoI CTYRAG 1 cut(s) 527
Sse9I AATT 2 cut(s) 470, 571
SsiI CCGC 7 cut(s) 60, 142, 264, 328, 333, 423, 640
SspDI GGCGCC 1 cut(s) 287
SspMI CTAG 1 cut(s) 317
StyD4I CCNGG 1 cut(s) 432
TaaI ACNGT 3 cut(s) 124, 691, 721
TaiI ACGT 1 cut(s) 84
TaqI TCGA 8 cut(s) 75, 84, 138, 252, 270, 282, 300, 393
TasI AATT 2 cut(s) 470, 571
TauI GCSGC 4 cut(s) 62, 330, 426, 643
TfiI GAWTC 3 cut(s) 12, 189, 234
TseFI GTSAC 1 cut(s) 556
TseI GCWGC 4 cut(s) 330, 487, 513, 620
Tsp45I GTSAC 1 cut(s) 556
TspGWI ACGGA 1 cut(s) 575
Tth111I GACNNNGTC 1 cut(s) 296
VpaK11BI GGWCC 1 cut(s) 336
XagI CCTNNNNNAGG 1 cut(s) 320
XapI RAATTY 1 cut(s) 470
XmiI GTMKAC 3 cut(s) 138, 300, 393
XspI CTAG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.