AT4G04910

Cell division protein 48 (CDC48), domain 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0003337
Physical Location & Seq
Reverse (-)
2489364 .. 2495863
6500 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G04910.1

Sequence Viewer

Length: 2229 bp
ATGGCGGGTCGTTACGGATCGCAAGTCATGACGATGACTGTGACCAATACTCCGTCCGCAGATCTAGCTTTTACTAACCTCGCTTACTGCTCTTCTTCCGATCTCCGTCAATTCTCCGTTCCCGGTTCCGATCTCTTCCTCGCCAACGTTGCCGATAGCTTCATTCTTTCTCTCTGTGGACATGGAAGCATCCGTGATGGAAATATTGCTCTCAATGCTATTCAAAGGCGACACGCTAGAGTTTCGACTGGTGATATGGTATCTGTTAGCAGATTTGTTCCTCCTGAAAATTTTGATCTGGCTATGCTGACGCTGGAGTTGGAATTTGTGAAGAAAGGAACTAAAAGCGAGCAGGTTGATGCTGCTCTCCTTTCGACCCAGCTTAAGAGGAAATACACCAACCAGGTCTTGACTGTAGGCCAGAAAGCGACATTTGAGTATCATGGAACTAATTACATTCTTACGGTCAATCGAGCGGATGTTGAGGGTCAGGATCACACGAACGGCATTGAAAGAGGGTTGCTCTCTAAAGACACGTATATTGTGTTTGAAGCATCAAATGCAAGTGGCATAAAGATTGTCAACCAACGGGAAGCTGCTAGCAGCAATATATTCAAACATAAGGAATTTAACCTTGAGTCGCTGGGAATAGGTGGTCTTGGTGCAGAGTTTGCTGATATATTTAGAAGAGCTTTTGCTTCTCGTGTATTTCCTCCTCATGTCACCAGCAGACTGGGAATAAAGCATGTTAAAGGGATGCTTCTTTTTGGACCTCCTGGTACTGGCAAAACCCTTATGGCACGGCAAATTGGAAAGATGCTTAATGGAAAGGATCCAAAGATCGTTAATGGGCCTGAGGTGCTGAGCAAGTTTGTTGGTGAGACAGAAAAGAATGTAAGAGACTTATTTGCTGATGCTGAGCAAGACCAGAGGACCCTTGGTGATGCTAGTGAGTTGCATGTCATTATTTTTGATGAGATTGATGCTATTTGCAAGTCAAGAGGTTCAACCAGAGATGGCACAGGTGTCCATGATAGTATTGTAAACCAGCTTTTGACAAAGATAGATGGTGTGGAGGCCTTAAACAATGTTTTGCTGATTGGAATGACAAACAGAAAGGATTTGCTTGATGAAGCTCTTTTAAGGCCTGGAAGATTGGAGGTTCAGGTTGAGATAAGCCTTCCTGATGAAGCTGGGCGTCTACAAATTCTTCAGATTCATACAAATAAGATGAAGGAAAATTCTTTCCTTGGGACTGATATCAATCTCCAAGAGCTTGCTGCTCGAACAAAAAATTACAGTGGTGCAGAGCTTGAAGGTGTTGTTAAAAGTGCTACATCATATGCATTAAACAGACAACTAAGCATGGATGATCTTACAAAGCCTGTGGAAGAAGAGAATATCAAGATCACTATGGAGGATTTTCTCCACGCTATCTATGAAGTTCAACCTGCATTTGGAGCCTCCACAGATGACCTAGAGCGCTGCAGACTCAATGGGATGGTAGATTGTGGTCATCGGCATAATCACATTTACAAAAGAGCTATGCTTCTAGTCGAGCAAGTTAAAGTTAGTACTAGAAGTCCTCTAGTCACTTGCCTTCTGGAGGGGCCCAGTGGAAGTGGGAAAACTGCTTTAGCAGCAACAATTGGTATCGATAGTGACTTCCCATATGTTAAGATAGTTTCTGCGGAAACTATGATTGGTCTTTCTGAGAGCACAAAATGTGCTCACATTGTCAAGGTCTTTGAGGATGCATATAAATCTCCAATGAGCATCATTATCCTTGACGATATTGAAAGATTGTTGGAATTCATAGCAATCGGTCCTCGCTTTTCAAACATAATTTCACAGACGCTGATGGTCCTTCTCAAACGACTTCCTCCTAAGGGGAAGAAACTTCTCGTCTTTGGGACAACAAGTGAAGTAACCTTCTTAGAGTCTGTTGGTATCTCTGATTGCTTCTCTGTCACTCACTCTGTTCCGACACTGCAAAAAGAGGACGCAAAGAAGGTGCTAAATCAGCTTAACCTCTTCTCAGAGGATGATGTTGATTCAGCTGCAGAGGCTCTCAATGACATGCCAATCAAGAAGATTTACATGCTAATAGAAATGGCTGCGCAAGGAGAAAACGGTGGATCTGCAGAAGCTATCTATGCTGGGAGAGAGAAAATCAATATCAATCATTTCTATGATTGCTTAGGAGACTTCATTCGCTTCACTGGCTAG

Protein Analysis

742

Amino Acids

81.49

Weight (kDa)

5.74

Isoelectric Point (pI)

32.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDC48_2 PF02933 118 - 167 2.1e-06 Cell division protein 48 (CDC48), domain 2
AAA PF00004 253 - 393 2.6e-35 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 420 - 456 3.6e-10 AAA+ lid domain
AAA PF00004 534 - 646 5.3e-09 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 2121
Acc36I ACCTGC 2 cut(s) 343, 1459
AccBSI CCGCTC 1 cut(s) 476
AccI GTMKAC 1 cut(s) 1201
AciI CCGC 4 cut(s) 5, 57, 476, 1691
AclI AACGTT 1 cut(s) 147
AclWI GGATC 5 cut(s) 25, 501, 827, 840, 2146
AcsI RAATTY 6 cut(s) 289, 323, 626, 1206, 1240, 1811
AcuI CTGAAG 1 cut(s) 1196
AcyI GRCGYC 1 cut(s) 1198
AfaI GTAC 2 cut(s) 781, 1576
AfeI AGCGCT 1 cut(s) 1484
AfiI CCNNNNNNNGG 4 cut(s) 782, 1457, 1606, 1889
AflII CTTAAG 1 cut(s) 383
AflIII ACRYGT 1 cut(s) 534
AgsI TTSAA 9 cut(s) 224, 512, 551, 616, 1008, 1316, 1448, 1799, 1839
AjnI CCWGG 3 cut(s) 402, 775, 1147
AjuI GAANNNNNNNTTGG 2 cut(s) 1686, 1718
Alw21I GWGCWC 2 cut(s) 1721, 1732
Alw26I GTCTC 3 cut(s) 875, 894, 2199
AlwI GGATC 5 cut(s) 25, 501, 827, 840, 2146
AlwNI CAGNNNCTG 1 cut(s) 1858
Aor51HI AGCGCT 1 cut(s) 1484
AoxI GGCC 5 cut(s) 418, 851, 1077, 1145, 1610
ApaI GGGCCC 1 cut(s) 1614
ApeKI GCWGC 8 cut(s) 362, 596, 603, 1280, 1485, 1640, 2060, 2117
ApoI RAATTY 6 cut(s) 289, 323, 626, 1206, 1240, 1811
AspLEI GCGC 2 cut(s) 1485, 2122
AspS9I GGNCC 7 cut(s) 770, 851, 933, 1610, 1611, 1826, 1864
AsuC2I CCSGG 1 cut(s) 123
AsuHPI GGTGA 4 cut(s) 263, 715, 890, 953
AsuNHI GCTAGC 1 cut(s) 599
AvaII GGWCC 4 cut(s) 770, 933, 1826, 1864
AxyI CCTNAGG 2 cut(s) 855, 1887
BaeGI GKGCMC 1 cut(s) 1614
BamHI GGATCC 1 cut(s) 832
BanII GRGCYC 1 cut(s) 1614
BauI CACGAG 1 cut(s) 702
Bbv12I GWGCWC 2 cut(s) 1721, 1732
BbvI GCAGC 8 cut(s) 349, 583, 615, 1267, 1472, 1652, 2047, 2104
BccI CCATC 5 cut(s) 191, 1010, 1061, 1495, 1855
BceAI ACGGC 2 cut(s) 520, 818
BciT130I CCWGG 3 cut(s) 404, 777, 1149
BcnI CCSGG 1 cut(s) 123
BcoDI GTCTC 3 cut(s) 875, 894, 2199
BfaI CTAG 9 cut(s) 65, 237, 600, 948, 1478, 1553, 1578, 1589, 2227
BfmI CTRYAG 4 cut(s) 414, 1486, 2061, 2142
BfoI RGCGCY 1 cut(s) 1486
BfrI CTTAAG 1 cut(s) 383
BfuAI ACCTGC 2 cut(s) 343, 1459
BglII AGATCT 1 cut(s) 61
BisI GCNGC 8 cut(s) 363, 597, 604, 1281, 1486, 1641, 2061, 2118
BlpI GCTNAGC 2 cut(s) 863, 918
BlsI GCNGC 8 cut(s) 364, 598, 605, 1282, 1487, 1642, 2062, 2119
BmcAI AGTACT 1 cut(s) 1576
Bme1390I CCNGG 4 cut(s) 123, 404, 777, 1149
Bme18I GGWCC 4 cut(s) 770, 933, 1826, 1864
BmgT120I GGNCC 7 cut(s) 770, 851, 933, 1610, 1611, 1826, 1864
BmiI GGNNCC 6 cut(s) 127, 834, 935, 1462, 1611, 1612
BmrFI CCNGG 4 cut(s) 123, 404, 777, 1149
BmrI ACTGGG 2 cut(s) 743, 1608
BmtI GCTAGC 1 cut(s) 603
BmuI ACTGGG 2 cut(s) 743, 1608
BplI GAGNNNNNCTC 2 cut(s) 507, 539
BpmI CTGGAG 2 cut(s) 335, 1625
Bpu10I CCTNAGC 1 cut(s) 2200
Bpu1102I GCTNAGC 2 cut(s) 863, 918
BpuEI CTTGAG 1 cut(s) 656
BpuMI CCSGG 1 cut(s) 123
Bsa29I ATCGAT 1 cut(s) 1656
BsaAI YACGTR 1 cut(s) 537
BsaBI GATNNNNATC 1 cut(s) 1263
BsaHI GRCGYC 1 cut(s) 1198
BsaJI CCNNGG 2 cut(s) 937, 1249
BsaXI ACNNNNNCTCC 2 cut(s) 34, 64
Bsc4I CCNNNNNNNGG 4 cut(s) 782, 1457, 1606, 1889
Bse1I ACTGG 5 cut(s) 253, 738, 787, 1614, 2227
Bse21I CCTNAGG 2 cut(s) 855, 1887
Bse8I GATNNNNATC 1 cut(s) 1263
BseBI CCWGG 3 cut(s) 404, 777, 1149
BseCI ATCGAT 1 cut(s) 1656
BseDI CCNNGG 2 cut(s) 937, 1249
BseGI GGATG 7 cut(s) 189, 484, 762, 1375, 1506, 1759, 2050
BseJI GATNNNNATC 1 cut(s) 1263
BseLI CCNNNNNNNGG 4 cut(s) 782, 1457, 1606, 1889
BseMII CTCAG 5 cut(s) 846, 854, 909, 1704, 2052
BseNI ACTGG 5 cut(s) 253, 738, 787, 1614, 2227
BseRI GAGGAG 1 cut(s) 705
BseSI GKGCMC 1 cut(s) 1614
BseXI GCAGC 8 cut(s) 349, 583, 615, 1267, 1472, 1652, 2047, 2104
BseYI CCCAGC 4 cut(s) 378, 643, 1193, 2159
BsgI GTGCAG 2 cut(s) 684, 1326
BshFI GGCC 5 cut(s) 420, 853, 1079, 1147, 1612
BshVI ATCGAT 1 cut(s) 1656
BsiHKAI GWGCWC 2 cut(s) 1721, 1732
BsiSI CCGG 1 cut(s) 123
BslFI GGGAC 2 cut(s) 1267, 1927
BslI CCNNNNNNNGG 4 cut(s) 782, 1457, 1606, 1889
BsmAI GTCTC 3 cut(s) 875, 894, 2199
BsmFI GGGAC 2 cut(s) 1267, 1927
BsnI GGCC 5 cut(s) 420, 853, 1079, 1147, 1612
Bsp120I GGGCCC 1 cut(s) 1610
Bsp1286I GDGCHC 3 cut(s) 1614, 1721, 1732
Bsp1720I GCTNAGC 2 cut(s) 863, 918
BspACI CCGC 4 cut(s) 5, 57, 476, 1691
BspANI GGCC 5 cut(s) 420, 853, 1079, 1147, 1612
BspCNI CTCAG 5 cut(s) 847, 855, 910, 1705, 2051
BspDI ATCGAT 1 cut(s) 1656
BspHI TCATGA 1 cut(s) 27
BspLI GGNNCC 6 cut(s) 127, 834, 935, 1462, 1611, 1612
BspMAI CTGCAG 3 cut(s) 1490, 2065, 2146
BspMI ACCTGC 2 cut(s) 343, 1459
BspOI GCTAGC 1 cut(s) 603
BspPI GGATC 5 cut(s) 25, 501, 827, 840, 2146
BspQI GCTCTTC 2 cut(s) 97, 682
BspTI CTTAAG 1 cut(s) 383
BsrBI CCGCTC 1 cut(s) 476
BsrI ACTGG 5 cut(s) 253, 738, 787, 1614, 2227
BssECI CCNNGG 2 cut(s) 937, 1249
BssNI GRCGYC 1 cut(s) 1198
BssSI CACGAG 1 cut(s) 702
BssT1I CCWWGG 2 cut(s) 937, 1249
Bst2BI CACGAG 1 cut(s) 702
Bst2UI CCWGG 3 cut(s) 404, 777, 1149
Bst4CI ACNGT 5 cut(s) 40, 415, 466, 1301, 2135
Bst6I CTCTTC 5 cut(s) 97, 140, 682, 1389, 2039
BstACI GRCGYC 1 cut(s) 1198
BstAFI CTTAAG 1 cut(s) 383
BstAPI GCANNNNNTGC 2 cut(s) 560, 671
BstBAI YACGTR 1 cut(s) 537
BstC8I GCNNGC 3 cut(s) 350, 601, 1278
BstDEI CTNAG 9 cut(s) 855, 863, 918, 1361, 1713, 1887, 1936, 2038, 2200
BstENI CCTNNNNNAGG 1 cut(s) 1604
BstF5I GGATG 7 cut(s) 189, 484, 762, 1375, 1506, 1759, 2050
BstH2I RGCGCY 1 cut(s) 1486
BstHHI GCGC 2 cut(s) 1485, 2122
BstMAI GTCTC 3 cut(s) 875, 894, 2199
BstNI CCWGG 3 cut(s) 404, 777, 1149
BstNSI RCATGY 4 cut(s) 749, 962, 2083, 2104
BstSCI CCNGG 4 cut(s) 121, 402, 775, 1147
BstSFI CTRYAG 4 cut(s) 414, 1486, 2061, 2142
BstSLI GKGCMC 1 cut(s) 1614
BstV1I GCAGC 8 cut(s) 349, 583, 615, 1267, 1472, 1652, 2047, 2104
BstX2I RGATCY 3 cut(s) 61, 832, 2138
BstXI CCANNNNNNTGG 1 cut(s) 733
BstYI RGATCY 3 cut(s) 61, 832, 2138
Bsu15I ATCGAT 1 cut(s) 1656
Bsu36I CCTNAGG 2 cut(s) 855, 1887
BsuRI GGCC 5 cut(s) 420, 853, 1079, 1147, 1612
BsuTUI ATCGAT 1 cut(s) 1656
BtsCI GGATG 7 cut(s) 189, 484, 762, 1375, 1506, 1759, 2050
BtsI GCAGTG 1 cut(s) 1988
BtsIMutI CAGTG 4 cut(s) 1306, 1621, 1988, 2220
BveI ACCTGC 2 cut(s) 343, 1459
Cac8I GCNNGC 3 cut(s) 350, 601, 1278
CaiI CAGNNNCTG 1 cut(s) 1858
CciI TCATGA 1 cut(s) 27
CfoI GCGC 2 cut(s) 1485, 2122
Cfr13I GGNCC 7 cut(s) 770, 851, 933, 1610, 1611, 1826, 1864
ClaI ATCGAT 1 cut(s) 1656
CseI GACGC 4 cut(s) 319, 1187, 1864, 2012
CsiI ACCWGGT 1 cut(s) 402
Csp6I GTAC 2 cut(s) 780, 1575
CspCI CAANNNNNGTGG 2 cut(s) 1368, 1403
CviQI GTAC 2 cut(s) 780, 1575
DdeI CTNAG 9 cut(s) 855, 863, 918, 1361, 1713, 1887, 1936, 2038, 2200
Eam1104I CTCTTC 5 cut(s) 97, 140, 682, 1389, 2039
EarI CTCTTC 5 cut(s) 97, 140, 682, 1389, 2039
Eco130I CCWWGG 2 cut(s) 937, 1249
Eco147I AGGCCT 2 cut(s) 1079, 1147
Eco24I GRGCYC 1 cut(s) 1614
Eco32I GATATC 1 cut(s) 1261
Eco47I GGWCC 4 cut(s) 770, 933, 1826, 1864
Eco47III AGCGCT 1 cut(s) 1484
Eco57I CTGAAG 1 cut(s) 1196
Eco81I CCTNAGG 2 cut(s) 855, 1887
EcoNI CCTNNNNNAGG 1 cut(s) 1604
EcoO109I RGGNCCY 2 cut(s) 933, 1610
EcoRI GAATTC 1 cut(s) 1811
EcoRII CCWGG 3 cut(s) 402, 775, 1147
EcoRV GATATC 1 cut(s) 1261
EcoT14I CCWWGG 2 cut(s) 937, 1249
EcoT22I ATGCAT 2 cut(s) 1348, 1759
EcoT38I GRGCYC 1 cut(s) 1614
ErhI CCWWGG 2 cut(s) 937, 1249
FalI AAGNNNNNCTT 2 cut(s) 744, 776
FaqI GGGAC 2 cut(s) 1267, 1927
FauNDI CATATG 2 cut(s) 1342, 1672
FblI GTMKAC 1 cut(s) 1201
Fnu4HI GCNGC 8 cut(s) 363, 597, 604, 1281, 1486, 1641, 2061, 2118
FokI GGATG 7 cut(s) 176, 491, 769, 1382, 1513, 1766, 2057
FriOI GRGCYC 1 cut(s) 1614
Fsp4HI GCNGC 8 cut(s) 363, 597, 604, 1281, 1486, 1641, 2061, 2118
FspBI CTAG 9 cut(s) 65, 237, 600, 948, 1478, 1553, 1578, 1589, 2227
FspI TGCGCA 1 cut(s) 2121
GlaI GCGC 2 cut(s) 1484, 2121
GluI GCNGC 8 cut(s) 363, 597, 604, 1281, 1486, 1641, 2061, 2118
GsaI CCCAGC 4 cut(s) 382, 647, 1197, 2163
GsuI CTGGAG 2 cut(s) 335, 1625
HaeII RGCGCY 1 cut(s) 1486
HaeIII GGCC 5 cut(s) 420, 853, 1079, 1147, 1612
HapII CCGG 1 cut(s) 123
HgaI GACGC 4 cut(s) 319, 1187, 1864, 2012
HhaI GCGC 2 cut(s) 1485, 2122
Hin1I GRCGYC 1 cut(s) 1198
Hin6I GCGC 2 cut(s) 1483, 2120
HinP1I GCGC 2 cut(s) 1483, 2120
HincII GTYRAC 1 cut(s) 583
HindII GTYRAC 1 cut(s) 583
HinfI GANTC 5 cut(s) 638, 1216, 1491, 1940, 2054
HpaII CCGG 1 cut(s) 123
HphI GGTGA 4 cut(s) 263, 715, 890, 953
Hpy166II GTNNAC 4 cut(s) 179, 583, 1045, 1202
Hpy188I TCNGA 7 cut(s) 100, 130, 1215, 1714, 1957, 1986, 2041
Hpy188III TCNNGA 9 cut(s) 28, 284, 409, 491, 999, 1184, 1405, 1604, 2089
Hpy8I GTNNAC 4 cut(s) 179, 583, 1045, 1202
HpyAV CCTTC 7 cut(s) 1190, 1228, 1310, 1610, 1877, 1942, 2005
HpyCH4III ACNGT 5 cut(s) 40, 415, 466, 1301, 2135
HpyCH4IV ACGT 2 cut(s) 147, 536
HpyF3I CTNAG 9 cut(s) 855, 863, 918, 1361, 1713, 1887, 1936, 2038, 2200
HpySE526I ACGT 2 cut(s) 147, 536
Hsp92I GRCGYC 1 cut(s) 1198
HspAI GCGC 2 cut(s) 1483, 2120
LguI GCTCTTC 2 cut(s) 97, 682
LmnI GCTCC 1 cut(s) 1460
Lsp1109I GCAGC 8 cut(s) 349, 583, 615, 1267, 1472, 1652, 2047, 2104
MabI ACCWGGT 1 cut(s) 402
MaeI CTAG 9 cut(s) 65, 237, 600, 948, 1478, 1553, 1578, 1589, 2227
MaeII ACGT 2 cut(s) 147, 536
MaeIII GTNAC 7 cut(s) 11, 40, 721, 1591, 1661, 1927, 1969
MbiI CCGCTC 1 cut(s) 476
MfeI CAATTG 1 cut(s) 1647
MflI RGATCY 3 cut(s) 61, 832, 2138
MhlI GDGCHC 3 cut(s) 1614, 1721, 1732
MlyI GAGTC 3 cut(s) 647, 1485, 1949
MmeI TCCRAC 3 cut(s) 300, 1788, 2009
Mph1103I ATGCAT 2 cut(s) 1348, 1759
MslI CAYNNNNRTG 2 cut(s) 32, 2190
MspA1I CMGCKG 1 cut(s) 2060
MspCI CTTAAG 1 cut(s) 383
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 4 cut(s) 123, 404, 777, 1149
MunI CAATTG 1 cut(s) 1647
MvaI CCWGG 3 cut(s) 404, 777, 1149
NciI CCSGG 1 cut(s) 123
NdeI CATATG 2 cut(s) 1342, 1672
NheI GCTAGC 1 cut(s) 599
NlaIV GGNNCC 6 cut(s) 127, 834, 935, 1462, 1611, 1612
NmuCI GTSAC 5 cut(s) 40, 721, 1591, 1661, 1969
NsbI TGCGCA 1 cut(s) 2121
NsiI ATGCAT 2 cut(s) 1348, 1759
NspI RCATGY 4 cut(s) 749, 962, 2083, 2104
PagI TCATGA 1 cut(s) 27
PceI AGGCCT 2 cut(s) 1079, 1147
PciSI GCTCTTC 2 cut(s) 97, 682
PfeI GAWTC 2 cut(s) 1216, 2054
PkrI GCNGC 8 cut(s) 364, 598, 605, 1282, 1487, 1642, 2062, 2119
PleI GAGTC 3 cut(s) 646, 1485, 1948
PpsI GAGTC 3 cut(s) 646, 1485, 1948
Ppu21I YACGTR 1 cut(s) 537
PpuMI RGGWCCY 1 cut(s) 933
Psp1406I AACGTT 1 cut(s) 147
Psp5II RGGWCCY 1 cut(s) 933
Psp6I CCWGG 3 cut(s) 402, 775, 1147
PspFI CCCAGC 4 cut(s) 378, 643, 1193, 2159
PspGI CCWGG 3 cut(s) 402, 775, 1147
PspN4I GGNNCC 6 cut(s) 127, 834, 935, 1462, 1611, 1612
PspOMI GGGCCC 1 cut(s) 1610
PspPI GGNCC 7 cut(s) 770, 851, 933, 1610, 1611, 1826, 1864
PspPPI RGGWCCY 1 cut(s) 933
PstI CTGCAG 3 cut(s) 1490, 2065, 2146
PstNI CAGNNNCTG 1 cut(s) 1858
PsuI RGATCY 3 cut(s) 61, 832, 2138
PvuII CAGCTG 1 cut(s) 2060
RsaI GTAC 2 cut(s) 781, 1576
RsaNI GTAC 2 cut(s) 780, 1575
RseI CAYNNNNRTG 2 cut(s) 32, 2190
SapI GCTCTTC 2 cut(s) 97, 682
SatI GCNGC 8 cut(s) 363, 597, 604, 1281, 1486, 1641, 2061, 2118
Sau96I GGNCC 7 cut(s) 770, 851, 933, 1610, 1611, 1826, 1864
ScaI AGTACT 1 cut(s) 1576
SchI GAGTC 3 cut(s) 647, 1485, 1949
ScrFI CCNGG 4 cut(s) 123, 404, 777, 1149
SduI GDGCHC 3 cut(s) 1614, 1721, 1732
SexAI ACCWGGT 1 cut(s) 402
SfcI CTRYAG 4 cut(s) 414, 1486, 2061, 2142
SinI GGWCC 4 cut(s) 770, 933, 1826, 1864
SmiMI CAYNNNNRTG 2 cut(s) 32, 2190
SmlI CTYRAG 2 cut(s) 383, 635
SmoI CTYRAG 2 cut(s) 383, 635
SseBI AGGCCT 2 cut(s) 1079, 1147
SsiI CCGC 4 cut(s) 5, 57, 476, 1691
SspI AATATT 1 cut(s) 205
SspMI CTAG 9 cut(s) 65, 237, 600, 948, 1478, 1553, 1578, 1589, 2227
StuI AGGCCT 2 cut(s) 1079, 1147
StyD4I CCNGG 4 cut(s) 121, 402, 775, 1147
StyI CCWWGG 2 cut(s) 937, 1249
TaaI ACNGT 5 cut(s) 40, 415, 466, 1301, 2135
TaiI ACGT 2 cut(s) 150, 539
TaqI TCGA 6 cut(s) 245, 374, 472, 1285, 1557, 1656
TaqII GACCGA 1 cut(s) 1814
TatI WGTACW 1 cut(s) 1574
TfiI GAWTC 2 cut(s) 1216, 2054
TscAI CASTG 4 cut(s) 1306, 1621, 1995, 2227
TseFI GTSAC 5 cut(s) 40, 721, 1591, 1661, 1969
TseI GCWGC 8 cut(s) 362, 596, 603, 1280, 1485, 1640, 2060, 2117
Tsp45I GTSAC 5 cut(s) 40, 721, 1591, 1661, 1969
TspDTI ATGAA 8 cut(s) 151, 1146, 1203, 1208, 1247, 1455, 1804, 2200
TspGWI ACGGA 5 cut(s) 30, 42, 95, 106, 182
TspRI CASTG 4 cut(s) 1306, 1621, 1995, 2227
Vha464I CTTAAG 1 cut(s) 383
VpaK11BI GGWCC 4 cut(s) 770, 933, 1826, 1864
XagI CCTNNNNNAGG 1 cut(s) 1604
XapI RAATTY 6 cut(s) 289, 323, 626, 1206, 1240, 1811
XceI RCATGY 4 cut(s) 749, 962, 2083, 2104
XcmI CCANNNNNNNNNTGG 1 cut(s) 935
XmiI GTMKAC 1 cut(s) 1201
XspI CTAG 9 cut(s) 65, 237, 600, 948, 1478, 1553, 1578, 1589, 2227
ZrmI AGTACT 1 cut(s) 1576
Zsp2I ATGCAT 2 cut(s) 1348, 1759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.