Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0003337

Physical Location & Seq

Genomic Coordinates Forward (+)

42227443 .. 42229904

Gene Structure 2462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G019100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGCTCCGGCGACGATGATCGTCATCAACACTCCGGCCACCGATCTTGCTCTCACCTACTTCTCACCGATCGATCTCCAGACCTTCGCCATTCCCGGCACCAAGCTCAACCCAGCTCTAATCGCCGACTCGTTCAGCATACAGAAGGGTTACATTGCGCTGAATGCGATTCAACGACTGCATGCTAGGGTTTCTAGCGGTGACTTATTATCTGTGAGCAGGTTTACTCCGCCTGATGATTTCAACCTGACTGTGCTCACTCTGGAATTGGAGTCGGTGAAAAAAGGGACTAAGAGTGAACAGATTGATGCTGTTGCCTTGTGGAGCCAACTTAAAAAGAGGTTTATCAACCAGGTTATGGCAGCTGGACAAAGAGTGTCATTTCAGTACCATGGGACTATTTACATTTTTACAGTCAATCAAGCTGTAAGATCCAAAGAGTCTAGCTCTGTTGAAAGAGGGATGATCTCAAATGAAACATACTTCATTTTTGAGATTGTGAACCAACGTTCTGATACGACTACCAATATCTTTAAGCACAAGGAATTCAATCTTCAAACACTTGGCATTGGTGGCTTAGGTGCTGAGTTTGCAGATACATTTCGAAGAGCTTTTGCCTCCCGTATCTTCCCTGCACATGTTACAAATAAACTAGGGCTTAAGCATGTGAAGGGTATGCTGCTTTATGGACCACCTGGAGATGAAAGTGAATTGCATGTCATAATCTCTGATGAAATCAGTGCTATTTGTAAGGCACAAAGTCTTTCTTACTCAATATCAAGATTCATTACGCATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 ko04727 ko04962 map04138 map04721 map04727 map04962

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N

Protein Analysis

266

Amino Acids

29.48

Weight (kDa)

8.58

Isoelectric Point (pI)

34.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04910
fragaria_vesca	FvH4_3g09180 FvH4_4g01371 FvH4_4g01380
malus_domestica	MD05G1312500.v1.1 MD05G1339600.v1.1 MD10G1294300.v1.1
prunus_persica	Prupe.4G047600_v2.0.a1
pyrus_communis	pycom05g29040 pycom10g24600
rosa_chinensis	RchiOBHm_Chr4g0419821 RchiOBHm_Chr5g0005931 RchiOBHm_Chr5g0005941 RchiOBHm_Chr5g0008441
rosa_laevigata	RLG00000031340 RLG00000031347 RLG00000031352 RLG00000031389 RLG00000031572
rosa_multiflora	Rmu_sc0000720.1_g000006 Rmu_sc0004326.1_g000001 Rmu_sc0006414.1_g000006
rosa_roxburghii	Rroxscaffold_1G00068050
rosa_rugosa	Rorug04G0435800
rosa_samantha	Rh4AG222000 Rh4BG224200 Rh4CG235100 Rh4DG221000 Rh5AG064700 Rh5BG061700 Rh5CG071500 Rh5CG071600 Rh5CG071800 Rh5CG071900
rosa_wichuraiana	Rw4G019100 Rw5G005630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	210
AccB1I	GGYRCC	1 cut(s)	98
AccB7I	CCANNNNNTGG	1 cut(s)	358
AciI	CCGC	2 cut(s)	198, 230
AclI	AACGTT	1 cut(s)	508
AclWI	GGATC	1 cut(s)	426
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	1 cut(s)	545
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	1 cut(s)	358
AflII	CTTAAG	1 cut(s)	659
AflIII	ACRYGT	1 cut(s)	637
AgsI	TTSAA	5 cut(s)	173, 244, 455, 550, 557
AjnI	CCWGG	2 cut(s)	351, 694
AluBI	AGCT	6 cut(s)	106, 116, 365, 425, 447, 611
AluI	AGCT	6 cut(s)	106, 116, 365, 425, 447, 611
Alw21I	GWGCWC	1 cut(s)	258
AlwI	GGATC	1 cut(s)	426
AoxI	GGCC	1 cut(s)	36
ApeKI	GCWGC	2 cut(s)	362, 679
ApoI	RAATTY	1 cut(s)	545
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	1 cut(s)	689
AsuC2I	CCSGG	1 cut(s)	96
AsuHPI	GGTGA	4 cut(s)	46, 57, 212, 289
AsuII	TTCGAA	1 cut(s)	604
AvaII	GGWCC	1 cut(s)	689
BanI	GGYRCC	1 cut(s)	98
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	2 cut(s)	374, 666
BciT130I	CCWGG	2 cut(s)	353, 696
BcnI	CCSGG	1 cut(s)	96
BfaI	CTAG	4 cut(s)	186, 195, 444, 653
BfrI	CTTAAG	1 cut(s)	659
BfuAI	ACCTGC	1 cut(s)	210
BisI	GCNGC	2 cut(s)	363, 680
BlsI	GCNGC	2 cut(s)	364, 681
Bme1390I	CCNGG	3 cut(s)	96, 353, 696
Bme18I	GGWCC	1 cut(s)	689
BmgT120I	GGNCC	1 cut(s)	689
BmiI	GGNNCC	3 cut(s)	6, 100, 326
BmrFI	CCNGG	3 cut(s)	96, 353, 696
BmsI	GCATC	1 cut(s)	298
BplI	GAGNNNNNCTC	2 cut(s)	431, 463
BpmI	CTGGAG	2 cut(s)	62, 717
Bpu10I	CCTNAGC	1 cut(s)	577
Bpu14I	TTCGAA	1 cut(s)	604
BpuMI	CCSGG	1 cut(s)	96
Bsa29I	ATCGAT	1 cut(s)	72
BsaBI	GATNNNNATC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	391
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse3DI	GCAATG	1 cut(s)	153
Bse8I	GATNNNNATC	1 cut(s)	23
BseBI	CCWGG	2 cut(s)	353, 696
BseCI	ATCGAT	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	391
BseGI	GGATG	1 cut(s)	468
BseJI	GATNNNNATC	1 cut(s)	23
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMI	GCAATG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	576
BseXI	GCAGC	2 cut(s)	374, 666
BseYI	CCCAGC	1 cut(s)	112
BsgI	GTGCAG	1 cut(s)	618
Bsh1285I	CGRYCG	1 cut(s)	72
BshFI	GGCC	1 cut(s)	38
BshNI	GGYRCC	1 cut(s)	98
BshVI	ATCGAT	1 cut(s)	72
BsiEI	CGRYCG	1 cut(s)	72
BsiHKAI	GWGCWC	1 cut(s)	258
BsiSI	CCGG	3 cut(s)	8, 35, 96
BslFI	GGGAC	2 cut(s)	301, 409
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmFI	GGGAC	2 cut(s)	301, 409
BsmI	GAATGC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	38
Bsp119I	TTCGAA	1 cut(s)	604
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	6 cut(s)	18, 43, 69, 73, 431, 465
Bsp19I	CCATGG	1 cut(s)	391
BspACI	CCGC	2 cut(s)	198, 230
BspANI	GGCC	1 cut(s)	38
BspCNI	CTCAG	1 cut(s)	577
BspDI	ATCGAT	1 cut(s)	72
BspLI	GGNNCC	3 cut(s)	6, 100, 326
BspMI	ACCTGC	1 cut(s)	210
BspPI	GGATC	1 cut(s)	426
BspQI	GCTCTTC	1 cut(s)	601
BspT104I	TTCGAA	1 cut(s)	604
BspT107I	GGYRCC	1 cut(s)	98
BspTI	CTTAAG	1 cut(s)	659
BsrDI	GCAATG	1 cut(s)	153
BssECI	CCNNGG	1 cut(s)	391
BssMI	GATC	6 cut(s)	18, 43, 69, 73, 431, 465
BssT1I	CCWWGG	1 cut(s)	391
Bst2UI	CCWGG	2 cut(s)	353, 696
Bst4CI	ACNGT	2 cut(s)	253, 415
Bst6I	CTCTTC	1 cut(s)	601
BstAFI	CTTAAG	1 cut(s)	659
BstBI	TTCGAA	1 cut(s)	604
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	3 cut(s)	291, 577, 585
BstDSI	CCRYGG	1 cut(s)	391
BstF5I	GGATG	1 cut(s)	468
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	6 cut(s)	21, 46, 72, 76, 434, 468
BstMBI	GATC	6 cut(s)	18, 43, 69, 73, 431, 465
BstMCI	CGRYCG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	4 cut(s)	122, 164, 573, 590
BstNI	CCWGG	2 cut(s)	353, 696
BstNSI	RCATGY	4 cut(s)	185, 641, 668, 719
BstSCI	CCNGG	3 cut(s)	94, 351, 694
BstV1I	GCAGC	2 cut(s)	374, 666
BstX2I	RGATCY	1 cut(s)	431
BstYI	RGATCY	1 cut(s)	431
Bsu15I	ATCGAT	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	38
BsuTUI	ATCGAT	1 cut(s)	72
BtgI	CCRYGG	1 cut(s)	391
BtsCI	GGATG	1 cut(s)	468
BtsIMutI	CAGTG	1 cut(s)	745
BveI	ACCTGC	1 cut(s)	210
Cac8I	GCNNGC	1 cut(s)	183
CfoI	GCGC	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	689
ClaI	ATCGAT	1 cut(s)	72
CsiI	ACCWGGT	1 cut(s)	351
Csp6I	GTAC	1 cut(s)	388
CspCI	CAANNNNNGTGG	2 cut(s)	28, 63
CviAII	CATG	6 cut(s)	182, 392, 638, 665, 716, 794
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	3 cut(s)	291, 577, 585
DpnI	GATC	6 cut(s)	20, 45, 71, 75, 433, 467
DpnII	GATC	6 cut(s)	18, 43, 69, 73, 431, 465
EaeI	YGGCCR	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	601
EarI	CTCTTC	1 cut(s)	601
EciI	GGCGGA	1 cut(s)	219
Eco130I	CCWWGG	1 cut(s)	391
Eco47I	GGWCC	1 cut(s)	689
EcoRI	GAATTC	1 cut(s)	545
EcoRII	CCWGG	2 cut(s)	351, 694
EcoT14I	CCWWGG	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	391
FaeI	CATG	6 cut(s)	185, 395, 641, 668, 719, 797
FalI	AAGNNNNNCTT	2 cut(s)	751, 783
FaqI	GGGAC	2 cut(s)	301, 409
FatI	CATG	6 cut(s)	181, 391, 637, 664, 715, 793
Fnu4HI	GCNGC	2 cut(s)	363, 680
FokI	GGATG	1 cut(s)	475
Fsp4HI	GCNGC	2 cut(s)	363, 680
FspBI	CTAG	4 cut(s)	186, 195, 444, 653
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	2 cut(s)	363, 680
GsaI	CCCAGC	1 cut(s)	116
GsuI	CTGGAG	2 cut(s)	62, 717
HaeIII	GGCC	1 cut(s)	38
HapII	CCGG	3 cut(s)	8, 35, 96
HhaI	GCGC	1 cut(s)	160
Hin1II	CATG	6 cut(s)	185, 395, 641, 668, 719, 797
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HinfI	GANTC	5 cut(s)	128, 169, 272, 440, 783
HpaII	CCGG	3 cut(s)	8, 35, 96
HphI	GGTGA	4 cut(s)	46, 57, 212, 289
Hpy166II	GTNNAC	3 cut(s)	225, 299, 502
Hpy188I	TCNGA	2 cut(s)	514, 730
Hpy188III	TCNNGA	3 cut(s)	79, 263, 780
Hpy8I	GTNNAC	3 cut(s)	225, 299, 502
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	3 cut(s)	94, 139, 664
HpyCH4III	ACNGT	2 cut(s)	253, 415
HpyCH4IV	ACGT	1 cut(s)	508
HpyCH4V	TGCA	4 cut(s)	181, 593, 635, 715
HpyF10VI	GCNNNNNNNGC	4 cut(s)	122, 164, 573, 590
HpyF3I	CTNAG	3 cut(s)	291, 577, 585
HpySE526I	ACGT	1 cut(s)	508
Hsp92II	CATG	6 cut(s)	185, 395, 641, 668, 719, 797
HspAI	GCGC	1 cut(s)	158
Kzo9I	GATC	6 cut(s)	18, 43, 69, 73, 431, 465
LguI	GCTCTTC	1 cut(s)	601
LmnI	GCTCC	2 cut(s)	10, 324
Lsp1109I	GCAGC	2 cut(s)	374, 666
LweI	GCATC	1 cut(s)	298
MabI	ACCWGGT	1 cut(s)	351
MaeI	CTAG	4 cut(s)	186, 195, 444, 653
MaeII	ACGT	1 cut(s)	508
MaeIII	GTNAC	3 cut(s)	149, 200, 640
MalI	GATC	6 cut(s)	20, 45, 71, 75, 433, 467
MboI	GATC	6 cut(s)	18, 43, 69, 73, 431, 465
MboII	GAAGA	3 cut(s)	545, 618, 619
MflI	RGATCY	1 cut(s)	431
MhlI	GDGCHC	1 cut(s)	258
MluCI	AATT	3 cut(s)	266, 545, 710
MlyI	GAGTC	3 cut(s)	122, 281, 449
MnlI	CCTC	3 cut(s)	333, 452, 628
MseI	TTAA	3 cut(s)	333, 534, 660
MspA1I	CMGCKG	1 cut(s)	365
MspCI	CTTAAG	1 cut(s)	659
MspI	CCGG	3 cut(s)	8, 35, 96
MspR9I	CCNGG	3 cut(s)	96, 353, 696
Mva1269I	GAATGC	1 cut(s)	169
MvaI	CCWGG	2 cut(s)	353, 696
MwoI	GCNNNNNNNGC	4 cut(s)	122, 164, 573, 590
NciI	CCSGG	1 cut(s)	96
NcoI	CCATGG	1 cut(s)	391
NdeII	GATC	6 cut(s)	18, 43, 69, 73, 431, 465
NlaIII	CATG	6 cut(s)	185, 395, 641, 668, 719, 797
NlaIV	GGNNCC	3 cut(s)	6, 100, 326
NmuCI	GTSAC	1 cut(s)	200
NspI	RCATGY	4 cut(s)	185, 641, 668, 719
NspV	TTCGAA	1 cut(s)	604
PaeI	GCATGC	1 cut(s)	185
PciI	ACATGT	1 cut(s)	637
PciSI	GCTCTTC	1 cut(s)	601
PctI	GAATGC	1 cut(s)	169
PfeI	GAWTC	2 cut(s)	169, 783
PflMI	CCANNNNNTGG	1 cut(s)	358
PkrI	GCNGC	2 cut(s)	364, 681
Ple19I	CGATCG	1 cut(s)	72
PleI	GAGTC	3 cut(s)	122, 280, 448
PpsI	GAGTC	3 cut(s)	122, 280, 448
PscI	ACATGT	1 cut(s)	637
Psp1406I	AACGTT	1 cut(s)	508
Psp6I	CCWGG	2 cut(s)	351, 694
PspFI	CCCAGC	1 cut(s)	112
PspGI	CCWGG	2 cut(s)	351, 694
PspN4I	GGNNCC	3 cut(s)	6, 100, 326
PspPI	GGNCC	1 cut(s)	689
PsuI	RGATCY	1 cut(s)	431
PvuI	CGATCG	1 cut(s)	72
PvuII	CAGCTG	1 cut(s)	365
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
SapI	GCTCTTC	1 cut(s)	601
SaqAI	TTAA	3 cut(s)	333, 534, 660
SatI	GCNGC	2 cut(s)	363, 680
Sau3AI	GATC	6 cut(s)	18, 43, 69, 73, 431, 465
Sau96I	GGNCC	1 cut(s)	689
SchI	GAGTC	3 cut(s)	122, 281, 449
ScrFI	CCNGG	3 cut(s)	96, 353, 696
SduI	GDGCHC	1 cut(s)	258
SexAI	ACCWGGT	1 cut(s)	351
SfaNI	GCATC	1 cut(s)	298
SfuI	TTCGAA	1 cut(s)	604
SinI	GGWCC	1 cut(s)	689
SmlI	CTYRAG	1 cut(s)	659
SmoI	CTYRAG	1 cut(s)	659
SphI	GCATGC	1 cut(s)	185
Sse9I	AATT	3 cut(s)	266, 545, 710
SsiI	CCGC	2 cut(s)	198, 230
SspMI	CTAG	4 cut(s)	186, 195, 444, 653
StyD4I	CCNGG	3 cut(s)	94, 351, 694
StyI	CCWWGG	1 cut(s)	391
TaaI	ACNGT	2 cut(s)	253, 415
TaiI	ACGT	1 cut(s)	511
TaqI	TCGA	2 cut(s)	72, 604
TasI	AATT	3 cut(s)	266, 545, 710
TfiI	GAWTC	2 cut(s)	169, 783
Tru1I	TTAA	3 cut(s)	333, 534, 660
Tru9I	TTAA	3 cut(s)	333, 534, 660
TscAI	CASTG	1 cut(s)	745
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	2 cut(s)	362, 679
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	5 cut(s)	475, 489, 717, 747, 775
TspRI	CASTG	1 cut(s)	745
Van91I	CCANNNNNTGG	1 cut(s)	358
Vha464I	CTTAAG	1 cut(s)	659
VpaK11BI	GGWCC	1 cut(s)	689
XapI	RAATTY	1 cut(s)	545
XceI	RCATGY	4 cut(s)	185, 641, 668, 719
XspI	CTAG	4 cut(s)	186, 195, 444, 653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.