Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003337

Physical Location & Seq

Genomic Coordinates Reverse (-)

3719992 .. 3723945

Gene Structure 3954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28710

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGCTTGTACTCGGTTATGGAAATCAAACTCCTCACCAGAGCATACAGAAGGGTTACATTGCGCTGAATGCGATTCAACGACGGCATACTAGGGTTTCTAGCGGTAACTCATTATCTGTGAGCAGGTTTACTCCGCCTGATGATTTCAAGCTGACCGTGCTCACTCTGGAATTGGAGTTTGTGAAAAAAGGGACTAAGAGTGAACAGATTGATGCTGTTGCCTTGTCGAGCCAACTTAAAAAGAGGTTTATCAACCAGGTTATGACAGCCGGACACAGAGTATCATTTGAGTACCTTGGGACTAATTACATTTTTACAGTCAATCAAGCTGTAAGATCCGAAGAGTCTAGCTCTGTTGAAAGAGGGATGATCTCGAGTGAAACATACTTCATTTTTGAGGCACCGAGTGGAAACGGAATAAAGATTGTGAACCAACGTTCTGCTACGACTAGCAATATCTTTAAGTACAAGGAATTCAACCTTCAATCACTTGGCGTTGGTGGCCTAGGTGCTGAGTTTGCAGATATATTTCGAAGAGCTTTTGCCTCCCGTGTCTTCCCTGCACATGTTACAAATAAACTAGGGATTAAGCATGTGAAGGGTATGCTGGTTTATGGACCACCTGGTACTGGAAAAACTCTTATGGCATGTCAAATTGGAAAAATGTTGAATGGGAAAGATCCAAAGATTGTTAATGGTCCAGAAGTCCTGAGCAAGTTCGTTGGTGAAACTGAAAAAAATGTTAGGGATCTATTTGCTGATGCTGAGAATGATCAAAGGCTTCCTGGAGATGAAAGTGAATTGCATGTCACAATCTTTGATGAAATCGATGCTATTTGTAAGTCAAGAGGATCAACTAGAGATGGCACAGGAGTTCATGATAGTATTGTGAACCAGTTACTTACAAAGGATTTAATTGATGAAGCCCTTTTGAGGCCAGGACGTCTGGAAGTTCAAATTGAGATAAGTCTTCCTGATGAAAATGGTCGCATACAGATTCTTCAAATTCATACGAACAAAATGAAGGAAAGCTCTTTTCTTGCTCCTGATGTCAACCTGCAAGCGCTTGCTGCTCGTACAAAGAACTATAGTGGTGCAGAACTGGAAGGTGTTGTTAAAAGTGCAGTATCATTTGCTTTGAATGGACAACTAAGTTTGGATGATCTTACCAAGCCAGTGGATGAAGAGAGTATTAAGGTTACCATGGATGATTTTCTACGTGCACTCCATGAAATTGTACCTGCATTTGGTGCCTCCACTGATGACCTTGAAAGATGCAGACTTCATGGCATGGTGGATTGTGGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 ko04727 ko04962 map04138 map04721 map04727 map04962

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N

Protein Analysis

436

Amino Acids

47.97

Weight (kDa)

6.11

Isoelectric Point (pI)

29.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	202 - 302	2.1e-19	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	350 - 380	8.7e-09	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04910
fragaria_vesca	FvH4_3g09180 FvH4_4g01371 FvH4_4g01380
malus_domestica	MD05G1312500.v1.1 MD05G1339600.v1.1 MD10G1294300.v1.1
prunus_persica	Prupe.4G047600_v2.0.a1
pyrus_communis	pycom05g29040 pycom10g24600
rosa_chinensis	RchiOBHm_Chr4g0419821 RchiOBHm_Chr5g0005931 RchiOBHm_Chr5g0005941 RchiOBHm_Chr5g0008441
rosa_laevigata	RLG00000031340 RLG00000031347 RLG00000031352 RLG00000031389 RLG00000031572
rosa_multiflora	Rmu_sc0000720.1_g000006 Rmu_sc0004326.1_g000001 Rmu_sc0006414.1_g000006
rosa_roxburghii	Rroxscaffold_1G00068050
rosa_rugosa	Rorug04G0435800
rosa_samantha	Rh4AG222000 Rh4BG224200 Rh4CG235100 Rh4DG221000 Rh5AG064700 Rh5BG061700 Rh5CG071500 Rh5CG071600 Rh5CG071800 Rh5CG071900
rosa_wichuraiana	Rw4G019100 Rw5G005630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	946
Acc36I	ACCTGC	3 cut(s)	114, 1065, 1249
AccB1I	GGYRCC	2 cut(s)	400, 1250
AciI	CCGC	2 cut(s)	102, 134
AclI	AACGTT	1 cut(s)	436
AclWI	GGATC	4 cut(s)	330, 674, 756, 859
AcsI	RAATTY	2 cut(s)	473, 1005
AcyI	GRCGYC	1 cut(s)	943
AdeI	CACNNNGTG	1 cut(s)	407
AfaI	GTAC	6 cut(s)	9, 293, 467, 628, 1078, 1239
AfeI	AGCGCT	1 cut(s)	1065
AfiI	CCNNNNNNNGG	3 cut(s)	629, 933, 1247
AflIII	ACRYGT	1 cut(s)	565
AjnI	CCWGG	4 cut(s)	255, 622, 784, 937
AluBI	AGCT	5 cut(s)	151, 329, 351, 539, 1032
AluI	AGCT	5 cut(s)	151, 329, 351, 539, 1032
Alw21I	GWGCWC	2 cut(s)	162, 1225
Alw44I	GTGCAC	1 cut(s)	1221
AlwI	GGATC	4 cut(s)	330, 674, 756, 859
Ama87I	CYCGRG	1 cut(s)	373
Aor51HI	AGCGCT	1 cut(s)	1065
AoxI	GGCC	2 cut(s)	502, 935
ApaLI	GTGCAC	1 cut(s)	1221
ApeKI	GCWGC	1 cut(s)	1070
ApoI	RAATTY	2 cut(s)	473, 1005
AspA2I	CCTAGG	1 cut(s)	505
AspLEI	GCGC	2 cut(s)	64, 1066
AspS9I	GGNCC	2 cut(s)	617, 698
AsuHPI	GGTGA	2 cut(s)	26, 737
AsuII	TTCGAA	1 cut(s)	532
AvaI	CYCGRG	1 cut(s)	373
AvaII	GGWCC	2 cut(s)	617, 698
AvrII	CCTAGG	1 cut(s)	505
BaeGI	GKGCMC	1 cut(s)	1225
BanI	GGYRCC	2 cut(s)	400, 1250
BbsI	GAAGAC	2 cut(s)	547, 962
Bbv12I	GWGCWC	2 cut(s)	162, 1225
BbvI	GCAGC	1 cut(s)	1057
BccI	CCATC	1 cut(s)	857
BceAI	ACGGC	1 cut(s)	98
BciT130I	CCWGG	4 cut(s)	257, 624, 786, 939
BclI	TGATCA	1 cut(s)	772
BfaI	CTAG	7 cut(s)	90, 99, 348, 450, 506, 581, 858
BfmI	CTRYAG	1 cut(s)	1087
BfoI	RGCGCY	1 cut(s)	1067
BfuAI	ACCTGC	3 cut(s)	114, 1065, 1249
BisI	GCNGC	1 cut(s)	1071
BlnI	CCTAGG	1 cut(s)	505
BlsI	GCNGC	1 cut(s)	1072
Bme1390I	CCNGG	4 cut(s)	257, 624, 786, 939
Bme18I	GGWCC	2 cut(s)	617, 698
BmeT110I	CYCGRG	1 cut(s)	373
BmgT120I	GGNCC	2 cut(s)	617, 698
BmiI	GGNNCC	2 cut(s)	402, 1252
BmrFI	CCNGG	4 cut(s)	257, 624, 786, 939
BmsI	GCATC	4 cut(s)	202, 751, 820, 1265
BpiI	GAAGAC	2 cut(s)	547, 962
BplI	GAGNNNNNCTC	2 cut(s)	335, 367
BpmI	CTGGAG	1 cut(s)	807
Bpu10I	CCTNAGC	1 cut(s)	710
Bpu14I	TTCGAA	1 cut(s)	532
Bsa29I	ATCGAT	1 cut(s)	828
BsaAI	YACGTR	1 cut(s)	1220
BsaHI	GRCGYC	1 cut(s)	943
BsaJI	CCNNGG	3 cut(s)	295, 505, 1203
BsaXI	ACNNNNNCTCC	2 cut(s)	1209, 1239
Bsc4I	CCNNNNNNNGG	3 cut(s)	629, 933, 1247
Bse1I	ACTGG	4 cut(s)	634, 895, 1107, 1175
Bse3DI	GCAATG	1 cut(s)	57
BseBI	CCWGG	4 cut(s)	257, 624, 786, 939
BseCI	ATCGAT	1 cut(s)	828
BseDI	CCNNGG	3 cut(s)	295, 505, 1203
BseGI	GGATG	4 cut(s)	372, 1165, 1186, 1213
BseLI	CCNNNNNNNGG	3 cut(s)	629, 933, 1247
BseMI	GCAATG	1 cut(s)	57
BseMII	CTCAG	3 cut(s)	504, 701, 756
BseNI	ACTGG	4 cut(s)	634, 895, 1107, 1175
BseRI	GAGGAG	1 cut(s)	21
BseSI	GKGCMC	1 cut(s)	1225
BseXI	GCAGC	1 cut(s)	1057
BsgI	GTGCAG	3 cut(s)	546, 1116, 1143
BshFI	GGCC	2 cut(s)	504, 937
BshNI	GGYRCC	2 cut(s)	400, 1250
BshVI	ATCGAT	1 cut(s)	828
BsiHKAI	GWGCWC	2 cut(s)	162, 1225
BsiHKCI	CYCGRG	1 cut(s)	373
BsiSI	CCGG	1 cut(s)	270
BslFI	GGGAC	2 cut(s)	205, 313
BslI	CCNNNNNNNGG	3 cut(s)	629, 933, 1247
BsmFI	GGGAC	2 cut(s)	205, 313
BsmI	GAATGC	1 cut(s)	73
BsnI	GGCC	2 cut(s)	504, 937
BsoBI	CYCGRG	1 cut(s)	373
Bsp119I	TTCGAA	1 cut(s)	532
Bsp1286I	GDGCHC	2 cut(s)	162, 1225
Bsp143I	GATC	7 cut(s)	335, 369, 679, 748, 772, 851, 1162
Bsp19I	CCATGG	1 cut(s)	1203
BspACI	CCGC	2 cut(s)	102, 134
BspANI	GGCC	2 cut(s)	504, 937
BspCNI	CTCAG	3 cut(s)	505, 702, 757
BspDI	ATCGAT	1 cut(s)	828
BspHI	TCATGA	1 cut(s)	877
BspLI	GGNNCC	2 cut(s)	402, 1252
BspMI	ACCTGC	3 cut(s)	114, 1065, 1249
BspPI	GGATC	4 cut(s)	330, 674, 756, 859
BspQI	GCTCTTC	1 cut(s)	529
BspT104I	TTCGAA	1 cut(s)	532
BspT107I	GGYRCC	2 cut(s)	400, 1250
BsrDI	GCAATG	1 cut(s)	57
BsrI	ACTGG	4 cut(s)	634, 895, 1107, 1175
BssECI	CCNNGG	3 cut(s)	295, 505, 1203
BssMI	GATC	7 cut(s)	335, 369, 679, 748, 772, 851, 1162
BssNI	GRCGYC	1 cut(s)	943
BssT1I	CCWWGG	3 cut(s)	295, 505, 1203
Bst2UI	CCWGG	4 cut(s)	257, 624, 786, 939
Bst4CI	ACNGT	2 cut(s)	157, 319
Bst6I	CTCTTC	3 cut(s)	336, 529, 1179
BstACI	GRCGYC	1 cut(s)	943
BstAPI	GCANNNNNTGC	1 cut(s)	1250
BstBAI	YACGTR	1 cut(s)	1220
BstBI	TTCGAA	1 cut(s)	532
BstC8I	GCNNGC	2 cut(s)	1062, 1068
BstDEI	CTNAG	5 cut(s)	195, 513, 710, 765, 1151
BstDSI	CCRYGG	1 cut(s)	1203
BstEII	GGTNACC	1 cut(s)	1198
BstF5I	GGATG	4 cut(s)	372, 1165, 1186, 1213
BstH2I	RGCGCY	1 cut(s)	1067
BstHHI	GCGC	2 cut(s)	64, 1066
BstKTI	GATC	7 cut(s)	338, 372, 682, 751, 775, 854, 1165
BstMBI	GATC	7 cut(s)	335, 369, 679, 748, 772, 851, 1162
BstMWI	GCNNNNNNNGC	6 cut(s)	68, 157, 501, 518, 1070, 1250
BstNI	CCWGG	4 cut(s)	257, 624, 786, 939
BstNSI	RCATGY	4 cut(s)	569, 596, 651, 809
BstPI	GGTNACC	1 cut(s)	1198
BstSCI	CCNGG	4 cut(s)	255, 622, 784, 937
BstSFI	CTRYAG	1 cut(s)	1087
BstSLI	GKGCMC	1 cut(s)	1225
BstV1I	GCAGC	1 cut(s)	1057
BstV2I	GAAGAC	2 cut(s)	547, 962
BstX2I	RGATCY	3 cut(s)	335, 679, 748
BstXI	CCANNNNNNTGG	1 cut(s)	1177
BstYI	RGATCY	3 cut(s)	335, 679, 748
Bsu15I	ATCGAT	1 cut(s)	828
BsuRI	GGCC	2 cut(s)	504, 937
BsuTUI	ATCGAT	1 cut(s)	828
BtgI	CCRYGG	1 cut(s)	1203
BtsCI	GGATG	4 cut(s)	372, 1165, 1186, 1213
BtsIMutI	CAGTG	2 cut(s)	1182, 1257
BveI	ACCTGC	3 cut(s)	114, 1065, 1249
Cac8I	GCNNGC	2 cut(s)	1062, 1068
CciI	TCATGA	1 cut(s)	877
CfoI	GCGC	2 cut(s)	64, 1066
Cfr13I	GGNCC	2 cut(s)	617, 698
ClaI	ATCGAT	1 cut(s)	828
CsiI	ACCWGGT	2 cut(s)	255, 622
Csp6I	GTAC	6 cut(s)	8, 292, 466, 627, 1077, 1238
CviAII	CATG	9 cut(s)	566, 593, 648, 806, 878, 1204, 1229, 1286, 1291
CviQI	GTAC	6 cut(s)	8, 292, 466, 627, 1077, 1238
DdeI	CTNAG	5 cut(s)	195, 513, 710, 765, 1151
DpnI	GATC	7 cut(s)	337, 371, 681, 750, 774, 853, 1164
DpnII	GATC	7 cut(s)	335, 369, 679, 748, 772, 851, 1162
DraIII	CACNNNGTG	1 cut(s)	407
Eam1104I	CTCTTC	3 cut(s)	336, 529, 1179
EarI	CTCTTC	3 cut(s)	336, 529, 1179
EciI	GGCGGA	1 cut(s)	123
Eco130I	CCWWGG	3 cut(s)	295, 505, 1203
Eco47I	GGWCC	2 cut(s)	617, 698
Eco47III	AGCGCT	1 cut(s)	1065
Eco88I	CYCGRG	1 cut(s)	373
Eco91I	GGTNACC	1 cut(s)	1198
EcoO65I	GGTNACC	1 cut(s)	1198
EcoRI	GAATTC	1 cut(s)	473
EcoRII	CCWGG	4 cut(s)	255, 622, 784, 937
EcoT14I	CCWWGG	3 cut(s)	295, 505, 1203
ErhI	CCWWGG	3 cut(s)	295, 505, 1203
FaeI	CATG	9 cut(s)	569, 596, 651, 809, 881, 1207, 1232, 1289, 1294
FaqI	GGGAC	2 cut(s)	205, 313
FatI	CATG	9 cut(s)	565, 592, 647, 805, 877, 1203, 1228, 1285, 1290
FbaI	TGATCA	1 cut(s)	772
Fnu4HI	GCNGC	1 cut(s)	1071
FokI	GGATG	4 cut(s)	379, 1172, 1193, 1220
Fsp4HI	GCNGC	1 cut(s)	1071
FspBI	CTAG	7 cut(s)	90, 99, 348, 450, 506, 581, 858
GlaI	GCGC	2 cut(s)	63, 1065
GluI	GCNGC	1 cut(s)	1071
GsuI	CTGGAG	1 cut(s)	807
HaeII	RGCGCY	1 cut(s)	1067
HaeIII	GGCC	2 cut(s)	504, 937
HapII	CCGG	1 cut(s)	270
HhaI	GCGC	2 cut(s)	64, 1066
Hin1I	GRCGYC	1 cut(s)	943
Hin1II	CATG	9 cut(s)	569, 596, 651, 809, 881, 1207, 1232, 1289, 1294
Hin6I	GCGC	2 cut(s)	62, 1064
HinP1I	GCGC	2 cut(s)	62, 1064
HincII	GTYRAC	1 cut(s)	1054
HindII	GTYRAC	1 cut(s)	1054
HinfI	GANTC	3 cut(s)	73, 344, 997
HpaII	CCGG	1 cut(s)	270
HphI	GGTGA	2 cut(s)	26, 737
Hpy166II	GTNNAC	6 cut(s)	129, 203, 430, 892, 1054, 1223
Hpy188I	TCNGA	1 cut(s)	340
Hpy188III	TCNNGA	9 cut(s)	167, 373, 701, 709, 846, 878, 947, 974, 1046
Hpy8I	GTNNAC	6 cut(s)	129, 203, 430, 892, 1054, 1223
Hpy99I	CGWCG	1 cut(s)	84
HpyAV	CCTTC	5 cut(s)	43, 491, 592, 1018, 1100
HpyCH4III	ACNGT	2 cut(s)	157, 319
HpyCH4IV	ACGT	3 cut(s)	436, 943, 1219
HpyCH4V	TGCA	9 cut(s)	521, 563, 805, 1060, 1097, 1124, 1223, 1244, 1278
HpyF10VI	GCNNNNNNNGC	6 cut(s)	68, 157, 501, 518, 1070, 1250
HpyF3I	CTNAG	5 cut(s)	195, 513, 710, 765, 1151
HpySE526I	ACGT	3 cut(s)	436, 943, 1219
Hsp92I	GRCGYC	1 cut(s)	943
Hsp92II	CATG	9 cut(s)	569, 596, 651, 809, 881, 1207, 1232, 1289, 1294
HspAI	GCGC	2 cut(s)	62, 1064
Ksp22I	TGATCA	1 cut(s)	772
Kzo9I	GATC	7 cut(s)	335, 369, 679, 748, 772, 851, 1162
LguI	GCTCTTC	1 cut(s)	529
LmnI	GCTCC	1 cut(s)	1048
Lsp1109I	GCAGC	1 cut(s)	1057
LweI	GCATC	4 cut(s)	202, 751, 820, 1265
MabI	ACCWGGT	2 cut(s)	255, 622
MaeI	CTAG	7 cut(s)	90, 99, 348, 450, 506, 581, 858
MaeII	ACGT	3 cut(s)	436, 943, 1219
MaeIII	GTNAC	6 cut(s)	53, 104, 568, 808, 897, 1198
MalI	GATC	7 cut(s)	337, 371, 681, 750, 774, 853, 1164
MboI	GATC	7 cut(s)	335, 369, 679, 748, 772, 851, 1162
MboII	GAAGA	6 cut(s)	353, 546, 547, 962, 992, 1196
MflI	RGATCY	3 cut(s)	335, 679, 748
MhlI	GDGCHC	2 cut(s)	162, 1225
MluCI	AATT	9 cut(s)	170, 304, 473, 654, 800, 915, 957, 1005, 1233
MlyI	GAGTC	1 cut(s)	353
MnlI	CCTC	8 cut(s)	42, 237, 356, 391, 556, 842, 927, 1264
MseI	TTAA	7 cut(s)	237, 462, 588, 693, 914, 1116, 1194
MspI	CCGG	1 cut(s)	270
MspR9I	CCNGG	4 cut(s)	257, 624, 786, 939
Mva1269I	GAATGC	1 cut(s)	73
MvaI	CCWGG	4 cut(s)	257, 624, 786, 939
MwoI	GCNNNNNNNGC	6 cut(s)	68, 157, 501, 518, 1070, 1250
NcoI	CCATGG	1 cut(s)	1203
NdeII	GATC	7 cut(s)	335, 369, 679, 748, 772, 851, 1162
NlaIII	CATG	9 cut(s)	569, 596, 651, 809, 881, 1207, 1232, 1289, 1294
NlaIV	GGNNCC	2 cut(s)	402, 1252
NmuCI	GTSAC	1 cut(s)	808
NspI	RCATGY	4 cut(s)	569, 596, 651, 809
NspV	TTCGAA	1 cut(s)	532
PaeR7I	CTCGAG	1 cut(s)	373
PagI	TCATGA	1 cut(s)	877
PciI	ACATGT	1 cut(s)	565
PciSI	GCTCTTC	1 cut(s)	529
PctI	GAATGC	1 cut(s)	73
PfeI	GAWTC	2 cut(s)	73, 997
PfoI	TCCNGGA	1 cut(s)	784
PkrI	GCNGC	1 cut(s)	1072
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
Ppu21I	YACGTR	1 cut(s)	1220
PscI	ACATGT	1 cut(s)	565
Psp1406I	AACGTT	1 cut(s)	436
Psp6I	CCWGG	4 cut(s)	255, 622, 784, 937
PspEI	GGTNACC	1 cut(s)	1198
PspGI	CCWGG	4 cut(s)	255, 622, 784, 937
PspN4I	GGNNCC	2 cut(s)	402, 1252
PspPI	GGNCC	2 cut(s)	617, 698
PsuI	RGATCY	3 cut(s)	335, 679, 748
RsaI	GTAC	6 cut(s)	9, 293, 467, 628, 1078, 1239
RsaNI	GTAC	6 cut(s)	8, 292, 466, 627, 1077, 1238
SapI	GCTCTTC	1 cut(s)	529
SaqAI	TTAA	7 cut(s)	237, 462, 588, 693, 914, 1116, 1194
SatI	GCNGC	1 cut(s)	1071
Sau3AI	GATC	7 cut(s)	335, 369, 679, 748, 772, 851, 1162
Sau96I	GGNCC	2 cut(s)	617, 698
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	4 cut(s)	257, 624, 786, 939
SduI	GDGCHC	2 cut(s)	162, 1225
SexAI	ACCWGGT	2 cut(s)	255, 622
SfaNI	GCATC	4 cut(s)	202, 751, 820, 1265
SfcI	CTRYAG	1 cut(s)	1087
Sfr274I	CTCGAG	1 cut(s)	373
SfuI	TTCGAA	1 cut(s)	532
SinI	GGWCC	2 cut(s)	617, 698
SlaI	CTCGAG	1 cut(s)	373
SmlI	CTYRAG	1 cut(s)	373
SmoI	CTYRAG	1 cut(s)	373
Sse9I	AATT	9 cut(s)	170, 304, 473, 654, 800, 915, 957, 1005, 1233
SsiI	CCGC	2 cut(s)	102, 134
SspMI	CTAG	7 cut(s)	90, 99, 348, 450, 506, 581, 858
StyD4I	CCNGG	4 cut(s)	255, 622, 784, 937
StyI	CCWWGG	3 cut(s)	295, 505, 1203
TaaI	ACNGT	2 cut(s)	157, 319
TaiI	ACGT	3 cut(s)	439, 946, 1222
TaqI	TCGA	4 cut(s)	227, 374, 532, 828
TasI	AATT	9 cut(s)	170, 304, 473, 654, 800, 915, 957, 1005, 1233
TatI	WGTACW	2 cut(s)	7, 465
TfiI	GAWTC	2 cut(s)	73, 997
Tru1I	TTAA	7 cut(s)	237, 462, 588, 693, 914, 1116, 1194
Tru9I	TTAA	7 cut(s)	237, 462, 588, 693, 914, 1116, 1194
TscAI	CASTG	2 cut(s)	1182, 1264
TseFI	GTSAC	1 cut(s)	808
TseI	GCWGC	1 cut(s)	1070
Tsp45I	GTSAC	1 cut(s)	808
TspGWI	ACGGA	1 cut(s)	429
TspRI	CASTG	2 cut(s)	1182, 1264
VneI	GTGCAC	1 cut(s)	1221
VpaK11BI	GGWCC	2 cut(s)	617, 698
XapI	RAATTY	2 cut(s)	473, 1005
XceI	RCATGY	4 cut(s)	569, 596, 651, 809
XhoI	CTCGAG	1 cut(s)	373
XmaJI	CCTAGG	1 cut(s)	505
XspI	CTAG	7 cut(s)	90, 99, 348, 450, 506, 581, 858
ZraI	GACGTC	1 cut(s)	944

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.