Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006414.1

Orthogroup ID

OG0003337

Physical Location & Seq

Genomic Coordinates Reverse (-)

21533 .. 22958

Gene Structure 1426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006414.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atgacacctgtccaggtcctcattggattgttggcaccttggcattggcatcataaaggaaagtacgaaggcaaaagcagagatgagcaggtgtttgggcccttttgggccgggttgttctgtaaaaggcttgacattcaaagctccttcttctgtgttaaacaaacaccccaaacggaatcaactctcccgcctctgaactttgaagaaatggctccggcgacgatgatcgtcatcaacactccggccaccgatcttgctctcacctacttctcaccgatcgatctccagaccttcgccattcccggcaccaagctcaacccagctctaatcgccgactcgttcagcatacagaagggttacattgcgctgaatgcgattcaacgacggcatgctagggttcctagcggtgacttattatctgtgagcaggtttactccgcctgatgatttcaacctgactgtgctcactctggaattggagttggtgaaaaaagggactaagagtgaacagattgatgctgttgccttgtggagccaacttaaaaagaggtttatcaaccaggttatggcagctggacaaagagtgtcatttcagtaccatgggactatttacatttttacagtcaatcaagctgtaagatccaaagagtctagctctgttaaaagagggatgatctcaaatgaaacatacttcatttttgaggcaccgagtggaaatggaataaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 ko04727 ko04962 map04138 map04721 map04727 map04962

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N

Protein Analysis

243

Amino Acids

27.21

Weight (kDa)

9.18

Isoelectric Point (pI)

41.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04910
fragaria_vesca	FvH4_3g09180 FvH4_4g01371 FvH4_4g01380
malus_domestica	MD05G1312500.v1.1 MD05G1339600.v1.1 MD10G1294300.v1.1
prunus_persica	Prupe.4G047600_v2.0.a1
pyrus_communis	pycom05g29040 pycom10g24600
rosa_chinensis	RchiOBHm_Chr4g0419821 RchiOBHm_Chr5g0005931 RchiOBHm_Chr5g0005941 RchiOBHm_Chr5g0008441
rosa_laevigata	RLG00000031340 RLG00000031347 RLG00000031352 RLG00000031389 RLG00000031572
rosa_multiflora	Rmu_sc0000720.1_g000006 Rmu_sc0004326.1_g000001 Rmu_sc0006414.1_g000006
rosa_roxburghii	Rroxscaffold_1G00068050
rosa_rugosa	Rorug04G0435800
rosa_samantha	Rh4AG222000 Rh4BG224200 Rh4CG235100 Rh4DG221000 Rh5AG064700 Rh5BG061700 Rh5CG071500 Rh5CG071600 Rh5CG071800 Rh5CG071900
rosa_wichuraiana	Rw4G019100 Rw5G005630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	79
Acc36I	ACCTGC	2 cut(s)	79, 420
AccB1I	GGYRCC	3 cut(s)	34, 308, 706
AccB7I	CCANNNNNTGG	1 cut(s)	568
AciI	CCGC	3 cut(s)	191, 408, 440
AclWI	GGATC	1 cut(s)	636
AcoI	YGGCCR	1 cut(s)	246
AdeI	CACNNNGTG	1 cut(s)	713
AfaI	GTAC	2 cut(s)	65, 599
AfiI	CCNNNNNNNGG	1 cut(s)	568
AgsI	TTSAA	4 cut(s)	140, 206, 383, 454
AjnI	CCWGG	2 cut(s)	12, 561
AluBI	AGCT	6 cut(s)	144, 316, 326, 575, 635, 657
AluI	AGCT	6 cut(s)	144, 316, 326, 575, 635, 657
Alw21I	GWGCWC	1 cut(s)	468
AlwI	GGATC	1 cut(s)	636
AoxI	GGCC	3 cut(s)	98, 108, 246
ApaI	GGGCCC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	572
AspLEI	GCGC	1 cut(s)	370
AspS9I	GGNCC	4 cut(s)	16, 98, 99, 108
AsuC2I	CCSGG	2 cut(s)	112, 306
AsuHPI	GGTGA	4 cut(s)	256, 267, 422, 499
AvaII	GGWCC	1 cut(s)	16
BaeGI	GKGCMC	1 cut(s)	102
BanI	GGYRCC	3 cut(s)	34, 308, 706
BanII	GRGCYC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	468
BbvI	GCAGC	1 cut(s)	584
BceAI	ACGGC	1 cut(s)	404
BciT130I	CCWGG	2 cut(s)	14, 563
BcnI	CCSGG	2 cut(s)	112, 306
BfaI	CTAG	3 cut(s)	396, 405, 654
BfuAI	ACCTGC	2 cut(s)	79, 420
BisI	GCNGC	1 cut(s)	573
BlsI	GCNGC	1 cut(s)	574
Bme1390I	CCNGG	4 cut(s)	14, 112, 306, 563
Bme18I	GGWCC	1 cut(s)	16
BmgT120I	GGNCC	4 cut(s)	16, 98, 99, 108
BmiI	GGNNCC	7 cut(s)	36, 100, 216, 310, 402, 536, 708
BmrFI	CCNGG	4 cut(s)	14, 112, 306, 563
BmsI	GCATC	2 cut(s)	58, 508
BoxI	GACNNNNGTC	1 cut(s)	8
BplI	GAGNNNNNCTC	2 cut(s)	641, 673
BpmI	CTGGAG	1 cut(s)	272
BpuMI	CCSGG	2 cut(s)	112, 306
Bsa29I	ATCGAT	1 cut(s)	282
BsaBI	GATNNNNATC	1 cut(s)	233
BsaJI	CCNNGG	2 cut(s)	38, 601
Bsc4I	CCNNNNNNNGG	1 cut(s)	568
Bse3DI	GCAATG	1 cut(s)	363
Bse8I	GATNNNNATC	1 cut(s)	233
BseBI	CCWGG	2 cut(s)	14, 563
BseCI	ATCGAT	1 cut(s)	282
BseDI	CCNNGG	2 cut(s)	38, 601
BseGI	GGATG	1 cut(s)	678
BseJI	GATNNNNATC	1 cut(s)	233
BseLI	CCNNNNNNNGG	1 cut(s)	568
BseMI	GCAATG	1 cut(s)	363
BseSI	GKGCMC	1 cut(s)	102
BseXI	GCAGC	1 cut(s)	584
BseYI	CCCAGC	1 cut(s)	322
Bsh1285I	CGRYCG	1 cut(s)	282
BshFI	GGCC	3 cut(s)	100, 110, 248
BshNI	GGYRCC	3 cut(s)	34, 308, 706
BshVI	ATCGAT	1 cut(s)	282
BsiEI	CGRYCG	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	468
BsiSI	CCGG	4 cut(s)	111, 218, 245, 306
BslFI	GGGAC	2 cut(s)	511, 619
BslI	CCNNNNNNNGG	1 cut(s)	568
BsmFI	GGGAC	2 cut(s)	511, 619
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	3 cut(s)	100, 110, 248
Bsp120I	GGGCCC	1 cut(s)	98
Bsp1286I	GDGCHC	2 cut(s)	102, 468
Bsp143I	GATC	6 cut(s)	228, 253, 279, 283, 641, 675
Bsp19I	CCATGG	1 cut(s)	601
BspACI	CCGC	3 cut(s)	191, 408, 440
BspANI	GGCC	3 cut(s)	100, 110, 248
BspDI	ATCGAT	1 cut(s)	282
BspLI	GGNNCC	7 cut(s)	36, 100, 216, 310, 402, 536, 708
BspMI	ACCTGC	2 cut(s)	79, 420
BspPI	GGATC	1 cut(s)	636
BspT107I	GGYRCC	3 cut(s)	34, 308, 706
BsrDI	GCAATG	1 cut(s)	363
BssECI	CCNNGG	2 cut(s)	38, 601
BssMI	GATC	6 cut(s)	228, 253, 279, 283, 641, 675
BssT1I	CCWWGG	2 cut(s)	38, 601
Bst2UI	CCWGG	2 cut(s)	14, 563
Bst4CI	ACNGT	2 cut(s)	463, 625
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	1 cut(s)	501
BstDSI	CCRYGG	1 cut(s)	601
BstF5I	GGATG	1 cut(s)	678
BstHHI	GCGC	1 cut(s)	370
BstKTI	GATC	6 cut(s)	231, 256, 282, 286, 644, 678
BstMBI	GATC	6 cut(s)	228, 253, 279, 283, 641, 675
BstMCI	CGRYCG	1 cut(s)	282
BstMWI	GCNNNNNNNGC	2 cut(s)	332, 374
BstNI	CCWGG	2 cut(s)	14, 563
BstNSI	RCATGY	1 cut(s)	395
BstPAI	GACNNNNGTC	1 cut(s)	8
BstSCI	CCNGG	4 cut(s)	12, 110, 304, 561
BstSLI	GKGCMC	1 cut(s)	102
BstV1I	GCAGC	1 cut(s)	584
BstX2I	RGATCY	1 cut(s)	641
BstYI	RGATCY	1 cut(s)	641
Bsu15I	ATCGAT	1 cut(s)	282
BsuRI	GGCC	3 cut(s)	100, 110, 248
BsuTUI	ATCGAT	1 cut(s)	282
BtgI	CCRYGG	1 cut(s)	601
BtsCI	GGATG	1 cut(s)	678
BveI	ACCTGC	2 cut(s)	79, 420
Cac8I	GCNNGC	1 cut(s)	393
CfoI	GCGC	1 cut(s)	370
Cfr13I	GGNCC	4 cut(s)	16, 98, 99, 108
ClaI	ATCGAT	1 cut(s)	282
CsiI	ACCWGGT	1 cut(s)	561
Csp6I	GTAC	2 cut(s)	64, 598
CspCI	CAANNNNNGTGG	2 cut(s)	238, 273
CviAII	CATG	2 cut(s)	392, 602
CviQI	GTAC	2 cut(s)	64, 598
DdeI	CTNAG	1 cut(s)	501
DpnI	GATC	6 cut(s)	230, 255, 281, 285, 643, 677
DpnII	GATC	6 cut(s)	228, 253, 279, 283, 641, 675
DraIII	CACNNNGTG	1 cut(s)	713
EaeI	YGGCCR	1 cut(s)	246
EciI	GGCGGA	1 cut(s)	429
Eco130I	CCWWGG	2 cut(s)	38, 601
Eco24I	GRGCYC	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	16
EcoO109I	RGGNCCY	2 cut(s)	16, 99
EcoRII	CCWGG	2 cut(s)	12, 561
EcoT14I	CCWWGG	2 cut(s)	38, 601
EcoT38I	GRGCYC	1 cut(s)	102
ErhI	CCWWGG	2 cut(s)	38, 601
FaeI	CATG	2 cut(s)	395, 605
FaiI	YATR	6 cut(s)	54, 350, 393, 569, 603, 691
FaqI	GGGAC	2 cut(s)	511, 619
FatI	CATG	2 cut(s)	391, 601
FauI	CCCGC	1 cut(s)	198
Fnu4HI	GCNGC	1 cut(s)	573
FokI	GGATG	1 cut(s)	685
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	1 cut(s)	573
FspBI	CTAG	3 cut(s)	396, 405, 654
GlaI	GCGC	1 cut(s)	369
GluI	GCNGC	1 cut(s)	573
GsaI	CCCAGC	1 cut(s)	326
GsuI	CTGGAG	1 cut(s)	272
HaeIII	GGCC	3 cut(s)	100, 110, 248
HapII	CCGG	4 cut(s)	111, 218, 245, 306
HhaI	GCGC	1 cut(s)	370
Hin1II	CATG	2 cut(s)	395, 605
Hin6I	GCGC	1 cut(s)	368
HinP1I	GCGC	1 cut(s)	368
HinfI	GANTC	4 cut(s)	179, 338, 379, 650
HpaII	CCGG	4 cut(s)	111, 218, 245, 306
HphI	GGTGA	4 cut(s)	256, 267, 422, 499
Hpy166II	GTNNAC	2 cut(s)	435, 509
Hpy188I	TCNGA	1 cut(s)	198
Hpy188III	TCNNGA	2 cut(s)	289, 473
Hpy8I	GTNNAC	2 cut(s)	435, 509
Hpy99I	CGWCG	2 cut(s)	226, 390
HpyAV	CCTTC	4 cut(s)	62, 157, 304, 349
HpyCH4III	ACNGT	2 cut(s)	463, 625
HpyF10VI	GCNNNNNNNGC	2 cut(s)	332, 374
HpyF3I	CTNAG	1 cut(s)	501
Hsp92II	CATG	2 cut(s)	395, 605
HspAI	GCGC	1 cut(s)	368
Kzo9I	GATC	6 cut(s)	228, 253, 279, 283, 641, 675
LmnI	GCTCC	3 cut(s)	149, 220, 534
Lsp1109I	GCAGC	1 cut(s)	584
LweI	GCATC	2 cut(s)	58, 508
MabI	ACCWGGT	1 cut(s)	561
MaeI	CTAG	3 cut(s)	396, 405, 654
MaeIII	GTNAC	2 cut(s)	359, 410
MalI	GATC	6 cut(s)	230, 255, 281, 285, 643, 677
MboI	GATC	6 cut(s)	228, 253, 279, 283, 641, 675
MboII	GAAGA	2 cut(s)	142, 218
MflI	RGATCY	1 cut(s)	641
MhlI	GDGCHC	2 cut(s)	102, 468
MluCI	AATT	1 cut(s)	476
MlyI	GAGTC	2 cut(s)	332, 659
MnlI	CCTC	5 cut(s)	29, 204, 543, 662, 697
MseI	TTAA	3 cut(s)	159, 543, 663
MspA1I	CMGCKG	1 cut(s)	575
MspI	CCGG	4 cut(s)	111, 218, 245, 306
MspR9I	CCNGG	4 cut(s)	14, 112, 306, 563
Mva1269I	GAATGC	1 cut(s)	379
MvaI	CCWGG	2 cut(s)	14, 563
MwoI	GCNNNNNNNGC	2 cut(s)	332, 374
NciI	CCSGG	2 cut(s)	112, 306
NcoI	CCATGG	1 cut(s)	601
NdeII	GATC	6 cut(s)	228, 253, 279, 283, 641, 675
NlaIII	CATG	2 cut(s)	395, 605
NlaIV	GGNNCC	7 cut(s)	36, 100, 216, 310, 402, 536, 708
NmuCI	GTSAC	1 cut(s)	410
NspI	RCATGY	1 cut(s)	395
PaeI	GCATGC	1 cut(s)	395
PaqCI	CACCTGC	1 cut(s)	79
PctI	GAATGC	1 cut(s)	379
PfeI	GAWTC	2 cut(s)	179, 379
PflMI	CCANNNNNTGG	1 cut(s)	568
PkrI	GCNGC	1 cut(s)	574
Ple19I	CGATCG	1 cut(s)	282
PleI	GAGTC	2 cut(s)	332, 658
PpsI	GAGTC	2 cut(s)	332, 658
PpuMI	RGGWCCY	1 cut(s)	16
PshAI	GACNNNNGTC	1 cut(s)	8
Psp5II	RGGWCCY	1 cut(s)	16
Psp6I	CCWGG	2 cut(s)	12, 561
PspFI	CCCAGC	1 cut(s)	322
PspGI	CCWGG	2 cut(s)	12, 561
PspN4I	GGNNCC	7 cut(s)	36, 100, 216, 310, 402, 536, 708
PspOMI	GGGCCC	1 cut(s)	98
PspPI	GGNCC	4 cut(s)	16, 98, 99, 108
PspPPI	RGGWCCY	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	641
PvuI	CGATCG	1 cut(s)	282
PvuII	CAGCTG	1 cut(s)	575
RsaI	GTAC	2 cut(s)	65, 599
RsaNI	GTAC	2 cut(s)	64, 598
SaqAI	TTAA	3 cut(s)	159, 543, 663
SatI	GCNGC	1 cut(s)	573
Sau3AI	GATC	6 cut(s)	228, 253, 279, 283, 641, 675
Sau96I	GGNCC	4 cut(s)	16, 98, 99, 108
SchI	GAGTC	2 cut(s)	332, 659
ScrFI	CCNGG	4 cut(s)	14, 112, 306, 563
SduI	GDGCHC	2 cut(s)	102, 468
SexAI	ACCWGGT	1 cut(s)	561
SfaNI	GCATC	2 cut(s)	58, 508
SinI	GGWCC	1 cut(s)	16
SphI	GCATGC	1 cut(s)	395
Sse9I	AATT	1 cut(s)	476
SsiI	CCGC	3 cut(s)	191, 408, 440
SspMI	CTAG	3 cut(s)	396, 405, 654
StyD4I	CCNGG	4 cut(s)	12, 110, 304, 561
StyI	CCWWGG	2 cut(s)	38, 601
TaaI	ACNGT	2 cut(s)	463, 625
TaqI	TCGA	1 cut(s)	282
TasI	AATT	1 cut(s)	476
TfiI	GAWTC	2 cut(s)	179, 379
Tru1I	TTAA	3 cut(s)	159, 543, 663
Tru9I	TTAA	3 cut(s)	159, 543, 663
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	1 cut(s)	572
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	2 cut(s)	685, 699
TspGWI	ACGGA	1 cut(s)	191
Van91I	CCANNNNNTGG	1 cut(s)	568
VpaK11BI	GGWCC	1 cut(s)	16
XceI	RCATGY	1 cut(s)	395
XcmI	CCANNNNNNNNNTGG	1 cut(s)	20
XspI	CTAG	3 cut(s)	396, 405, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.