Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003337

Physical Location & Seq

Genomic Coordinates Reverse (-)

5350731 .. 5357060

Gene Structure 6330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g09180.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2124 bp

ATGGCTCCGGCGACGACGATGATCGTCACCAACACTCCGGCCGCCGATCTCGCTCTCACCAACCTCGCCTACTGCTCGCCGCTCGATCTCCAGACCTTCGCCATTCCCGGCACCAAGCTCAACCTAGCTCTGATCGCTGACTCAGAAACTCCTCACAAGAGCATACAGCAGGGGTACATTGCGCTGAATGCGATTCAACGACGGCATGCTAGGGTTTCCAGCGGTGACTCAGTCTCTGTGAGAAGGTTTACTCCGCCTGATGACTTCAACCTGACTATGCTCACTCTGGAATTGGAGTTCGTGAAAAAAGGGACTAAGAGTGAGCAGATTGATGCTGGTGCCTTGTCGAGCCAACTTAAAAAGAGGTTTATGAACCAGGTTATGACAGCTGGACAAAGAGTATCATTTGAGTACCATGGGACTAATTACATTTTTACAGTCAATCAAGCTGTAAGATCAGAAGAGTCTACCTCTGTTGAAAGAGGAATGATCTCGAGTGAAACATATTTCATTTTTGAGGCACCAAGTGGAAATGGAATAAAGATTGTGGGCCAACGTTCTGATACGACTAGCAATATCTTTAAGCACAAGGAATTTAACCTTCAAACACTTGGCATTGGTGGCTTAGGTGCCGAGTTTGCAGATATATTCCGAAGAGCTTTTGCCTCCCGTGTCTTCCCTGCACATGTTACAAATAAACTAGGGATTAAGCATGTTAAGGGTATGCTGCTTTATGGACCACCTGGTACTGGAAAAACTCTGATGGCGCGTCAAATTGGAAAAATGTTGAATGGGAAAGATCCAAAGATTGTTAATGGTCCAGAAGTCCTAAGCAAGTTCGTTGGTGAAACTGAAAAGAATGTTAGGGATCTATTTGCTGATGCTGAGAATGATCAAAGGCTTCGTGGAGATGAAAGTGAATTGCATGTCATAATCTTTGATGAAATTGATGCTATTTGTAAGTCAAGGGGATCGACTAGAGATGGCACAGGCGTTCACGATAGTATTGTGAACCAGTTACTAACAAAGATTGATGCCCTTTTGAGGCCAGGACGTCTGGAAGTTCAAATTGAGATAAGTCTTCCTGATGAAAATGGTCGCTTACAGATTCTTCAAATTCATACAAACAAAATGAAGGAAAGCTCTTTTCTTACTCCTGATGTCAACCTGCAAGAGCTTGCTGCTCGTACAAAGAACTATAGTGGTGCAGAACTGGAAGGTGTTGTTAAAAGTGCAGTATCATTTGCTTTGAATAGACAACTAAGTTTGGATGATCTTACCAAGCCAGTGGATGAAGAGAGTATTAAGGTTACCATGGATGATTTCCTACGTGCACTCCATGAAATTGTACCTGCATTTGGTGCCTCCACTGATGACCTTGAAAGATGCAGACTTCATGGCATGGTGGATTGTGGGGAACGACATAAGCATATCTATCAAAGAGCCATGCTTCTCGTGGAGCAAGTTAAATCAAGTGAGAGAAGCCCACTGGTTACATGCCTTTTGGAAGGTCCTAGTGGCAGTGGTAAATCTTCACTAGCAGCTACTGTTGGCATCGACAGTGATTTCCCCTATGTTAAGATTATCTCGGCTGAGGCAATGATTGGTCTTCAAGAAAGCACTAAATGTGCACAGATCGCAAAGGTTTTTGAAGATGCATACAAGTCGCCATTGAGCATTATTATCCTGGATAATATTGAAAGGTTACTAGAGTATATTGCCATTGGTCCAAGGTTTTCAAATTTGATATCTCAAACACTGATGCTCCTTCTCAAGCGCACTCCTCCAAAGGGTAAAAAGCTTCTGGTTTTTGGTACAACAAGTGAATTGGGCTTCTTAGACTCAATTGGGTTTTGTGATACCTTCTCTGTCACTTACAGTGTTCCCACATTAACGACAGAGGCTGCAAAGAAGGTGCTAGAACAGTTGAATGTCTTTGCTGATGAAGACATAGATGCAGCTGCAGAGGCCCTGAATGATATTCCTATCAAGAAGCTCTATATGGTAATTGAGATGGCAGCCCAGGGTGAGCAAGGAGGGTCTTCCCATGCAATCTTCTCTGGACAATCGAAAATAGAGCTCGATCACTTTTATGCAATCCTCCAGGATACTGTTCGATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 ko04727 ko04962 map04138 map04721 map04727 map04962

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N

Protein Analysis

708

Amino Acids

77.74

Weight (kDa)

5.85

Isoelectric Point (pI)

38.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDC48_N	PF02359	30 - 83	3.6e-06	Cell division protein 48 (CDC48), N-terminal domain
CDC48_2	PF02933	109 - 154	3.6e-08	Cell division protein 48 (CDC48), domain 2
AAA	PF00004	242 - 347	1.5e-23	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	387 - 422	3.2e-10	AAA+ lid domain
AAA	PF00004	501 - 614	3.1e-08	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04910
fragaria_vesca	FvH4_3g09180 FvH4_4g01371 FvH4_4g01380
malus_domestica	MD05G1312500.v1.1 MD05G1339600.v1.1 MD10G1294300.v1.1
prunus_persica	Prupe.4G047600_v2.0.a1
pyrus_communis	pycom05g29040 pycom10g24600
rosa_chinensis	RchiOBHm_Chr4g0419821 RchiOBHm_Chr5g0005931 RchiOBHm_Chr5g0005941 RchiOBHm_Chr5g0008441
rosa_laevigata	RLG00000031340 RLG00000031347 RLG00000031352 RLG00000031389 RLG00000031572
rosa_multiflora	Rmu_sc0000720.1_g000006 Rmu_sc0004326.1_g000001 Rmu_sc0006414.1_g000006
rosa_roxburghii	Rroxscaffold_1G00068050
rosa_rugosa	Rorug04G0435800
rosa_samantha	Rh4AG222000 Rh4BG224200 Rh4CG235100 Rh4DG221000 Rh5AG064700 Rh5BG061700 Rh5CG071500 Rh5CG071600 Rh5CG071800 Rh5CG071900
rosa_wichuraiana	Rw4G019100 Rw5G005630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1057
Acc36I	ACCTGC	2 cut(s)	1176, 1360
AccB1I	GGYRCC	5 cut(s)	110, 338, 520, 629, 1361
AccBSI	CCGCTC	1 cut(s)	82
AccI	GTMKAC	1 cut(s)	467
AccII	CGCG	1 cut(s)	769
AciI	CCGC	4 cut(s)	42, 80, 222, 254
AclI	AACGTT	1 cut(s)	556
AclWI	GGATC	3 cut(s)	794, 876, 979
AcoI	YGGCCR	1 cut(s)	39
AcsI	RAATTY	3 cut(s)	593, 1116, 1741
AcyI	GRCGYC	1 cut(s)	1054
AdeI	CACNNNGTG	1 cut(s)	527
AfaI	GTAC	6 cut(s)	176, 413, 748, 1189, 1350, 1816
AfiI	CCNNNNNNNGG	4 cut(s)	749, 1044, 1358, 1790
AflIII	ACRYGT	1 cut(s)	685
AjnI	CCWGG	6 cut(s)	375, 742, 1048, 1686, 2022, 2103
AloI	GAACNNNNNNTCC	2 cut(s)	281, 313
Alw21I	GWGCWC	3 cut(s)	1336, 1633, 2082
Alw26I	GTCTC	1 cut(s)	238
Alw44I	GTGCAC	2 cut(s)	1332, 1629
AlwI	GGATC	3 cut(s)	794, 876, 979
AlwNI	CAGNNNCTG	3 cut(s)	236, 1547, 1904
Ama87I	CYCGRG	1 cut(s)	493
AoxI	GGCC	4 cut(s)	39, 550, 1046, 1968
ApaLI	GTGCAC	2 cut(s)	1332, 1629
ApeKI	GCWGC	7 cut(s)	727, 1181, 1541, 1904, 1958, 1961, 2018
ApoI	RAATTY	3 cut(s)	593, 1116, 1741
AspLEI	GCGC	3 cut(s)	184, 769, 1779
AspS9I	GGNCC	6 cut(s)	550, 737, 818, 1511, 1727, 1969
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	5 cut(s)	19, 49, 236, 857, 2039
AvaI	CYCGRG	1 cut(s)	493
AvaII	GGWCC	4 cut(s)	737, 818, 1511, 1727
BaeGI	GKGCMC	2 cut(s)	1336, 1633
BanI	GGYRCC	5 cut(s)	110, 338, 520, 629, 1361
BanII	GRGCYC	1 cut(s)	2082
BauI	CACGAG	1 cut(s)	1454
BbsI	GAAGAC	5 cut(s)	667, 1073, 1601, 1953, 2034
Bbv12I	GWGCWC	3 cut(s)	1336, 1633, 2082
BbvCI	CCTCAGC	1 cut(s)	1593
BbvI	GCAGC	7 cut(s)	714, 1168, 1553, 1891, 1948, 1970, 2030
BccI	CCATC	3 cut(s)	757, 977, 2008
BceAI	ACGGC	1 cut(s)	218
BcgI	CGANNNNNNTGC	2 cut(s)	1647, 1681
BciT130I	CCWGG	6 cut(s)	377, 744, 1050, 1688, 2024, 2105
BciVI	GTATCC	1 cut(s)	2101
BclI	TGATCA	1 cut(s)	892
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	238
BfaI	CTAG	9 cut(s)	125, 210, 570, 701, 978, 1515, 1538, 1709, 1919
BfmI	CTRYAG	2 cut(s)	1198, 1962
BfuAI	ACCTGC	2 cut(s)	1176, 1360
BfuI	GTATCC	1 cut(s)	2101
BisI	GCNGC	9 cut(s)	42, 80, 728, 1182, 1542, 1905, 1959, 1962, 2019
BlsI	GCNGC	9 cut(s)	43, 81, 729, 1183, 1543, 1906, 1960, 1963, 2020
Bme1390I	CCNGG	7 cut(s)	108, 377, 744, 1050, 1688, 2024, 2105
Bme18I	GGWCC	4 cut(s)	737, 818, 1511, 1727
BmeT110I	CYCGRG	1 cut(s)	493
BmgT120I	GGNCC	6 cut(s)	550, 737, 818, 1511, 1727, 1969
BmiI	GGNNCC	6 cut(s)	6, 112, 340, 522, 631, 1363
BmrFI	CCNGG	7 cut(s)	108, 377, 744, 1050, 1688, 2024, 2105
BmsI	GCATC	9 cut(s)	322, 871, 940, 1024, 1376, 1563, 1645, 1752, 1945
BpiI	GAAGAC	5 cut(s)	667, 1073, 1601, 1953, 2034
BplI	GAGNNNNNCTC	2 cut(s)	455, 487
BpmI	CTGGAG	2 cut(s)	74, 2087
Bpu10I	CCTNAGC	3 cut(s)	625, 830, 1593
BpuEI	CTTGAG	1 cut(s)	1757
BpuMI	CCSGG	1 cut(s)	108
BsaAI	YACGTR	1 cut(s)	1331
BsaHI	GRCGYC	1 cut(s)	1054
BsaJI	CCNNGG	5 cut(s)	415, 1314, 1730, 2022, 2023
BsaXI	ACNNNNNCTCC	6 cut(s)	19, 49, 1320, 1350, 1749, 1779
Bsc4I	CCNNNNNNNGG	4 cut(s)	749, 1044, 1358, 1790
Bse1I	ACTGG	5 cut(s)	754, 1015, 1218, 1286, 1494
Bse3DI	GCAATG	2 cut(s)	177, 1605
BseBI	CCWGG	6 cut(s)	377, 744, 1050, 1688, 2024, 2105
BseDI	CCNNGG	5 cut(s)	415, 1314, 1730, 2022, 2023
BseGI	GGATG	3 cut(s)	1276, 1297, 1324
BseLI	CCNNNNNNNGG	4 cut(s)	749, 1044, 1358, 1790
BseMI	GCAATG	2 cut(s)	177, 1605
BseMII	CTCAG	4 cut(s)	156, 243, 876, 1584
BseNI	ACTGG	5 cut(s)	754, 1015, 1218, 1286, 1494
BseRI	GAGGAG	2 cut(s)	141, 1773
BseSI	GKGCMC	2 cut(s)	1336, 1633
BseX3I	CGGCCG	1 cut(s)	39
BseXI	GCAGC	7 cut(s)	714, 1168, 1553, 1891, 1948, 1970, 2030
BsgI	GTGCAG	3 cut(s)	666, 1227, 1254
Bsh1236I	CGCG	1 cut(s)	769
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	4 cut(s)	41, 552, 1048, 1970
BshNI	GGYRCC	5 cut(s)	110, 338, 520, 629, 1361
BsiEI	CGRYCG	1 cut(s)	42
BsiHKAI	GWGCWC	3 cut(s)	1336, 1633, 2082
BsiHKCI	CYCGRG	1 cut(s)	493
BsiSI	CCGG	3 cut(s)	8, 38, 108
BslFI	GGGAC	2 cut(s)	325, 433
BslI	CCNNNNNNNGG	4 cut(s)	749, 1044, 1358, 1790
BsmAI	GTCTC	1 cut(s)	238
BsmFI	GGGAC	2 cut(s)	325, 433
BsmI	GAATGC	1 cut(s)	193
BsnI	GGCC	4 cut(s)	41, 552, 1048, 1970
BsoBI	CYCGRG	1 cut(s)	493
Bsp1286I	GDGCHC	3 cut(s)	1336, 1633, 2082
Bsp19I	CCATGG	2 cut(s)	415, 1314
BspACI	CCGC	4 cut(s)	42, 80, 222, 254
BspANI	GGCC	4 cut(s)	41, 552, 1048, 1970
BspCNI	CTCAG	4 cut(s)	155, 242, 877, 1585
BspFNI	CGCG	1 cut(s)	769
BspLI	GGNNCC	6 cut(s)	6, 112, 340, 522, 631, 1363
BspMAI	CTGCAG	1 cut(s)	1966
BspMI	ACCTGC	2 cut(s)	1176, 1360
BspPI	GGATC	3 cut(s)	794, 876, 979
BspQI	GCTCTTC	1 cut(s)	649
BspT107I	GGYRCC	5 cut(s)	110, 338, 520, 629, 1361
BsrBI	CCGCTC	1 cut(s)	82
BsrDI	GCAATG	2 cut(s)	177, 1605
BsrI	ACTGG	5 cut(s)	754, 1015, 1218, 1286, 1494
BssECI	CCNNGG	5 cut(s)	415, 1314, 1730, 2022, 2023
BssNI	GRCGYC	1 cut(s)	1054
BssSI	CACGAG	1 cut(s)	1454
BssT1I	CCWWGG	3 cut(s)	415, 1314, 1730
Bst2BI	CACGAG	1 cut(s)	1454
Bst2UI	CCWGG	6 cut(s)	377, 744, 1050, 1688, 2024, 2105
Bst4CI	ACNGT	6 cut(s)	439, 1549, 1562, 1880, 1926, 2113
Bst6I	CTCTTC	3 cut(s)	456, 649, 1290
BstACI	GRCGYC	1 cut(s)	1054
BstAPI	GCANNNNNTGC	1 cut(s)	1361
BstBAI	YACGTR	1 cut(s)	1331
BstC8I	GCNNGC	3 cut(s)	77, 207, 1179
BstDEI	CTNAG	9 cut(s)	142, 229, 315, 625, 830, 885, 1262, 1593, 1837
BstDSI	CCRYGG	2 cut(s)	415, 1314
BstEII	GGTNACC	1 cut(s)	1309
BstF5I	GGATG	3 cut(s)	1276, 1297, 1324
BstFNI	CGCG	1 cut(s)	769
BstHHI	GCGC	3 cut(s)	184, 769, 1779
BstMAI	GTCTC	1 cut(s)	238
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	8 cut(s)	50, 134, 188, 621, 638, 1361, 1637, 1967
BstNI	CCWGG	6 cut(s)	377, 744, 1050, 1688, 2024, 2105
BstNSI	RCATGY	5 cut(s)	209, 689, 716, 929, 1500
BstPI	GGTNACC	1 cut(s)	1309
BstSCI	CCNGG	7 cut(s)	106, 375, 742, 1048, 1686, 2022, 2103
BstSFI	CTRYAG	2 cut(s)	1198, 1962
BstSLI	GKGCMC	2 cut(s)	1336, 1633
BstUI	CGCG	1 cut(s)	769
BstV1I	GCAGC	7 cut(s)	714, 1168, 1553, 1891, 1948, 1970, 2030
BstV2I	GAAGAC	5 cut(s)	667, 1073, 1601, 1953, 2034
BstX2I	RGATCY	2 cut(s)	799, 868
BstXI	CCANNNNNNTGG	1 cut(s)	1288
BstYI	RGATCY	2 cut(s)	799, 868
BstZI	CGGCCG	1 cut(s)	39
BsuI	GTATCC	1 cut(s)	2101
BsuRI	GGCC	4 cut(s)	41, 552, 1048, 1970
BtgI	CCRYGG	2 cut(s)	415, 1314
BtsCI	GGATG	3 cut(s)	1276, 1297, 1324
BtsI	GCAGTG	1 cut(s)	1528
BtsIMutI	CAGTG	7 cut(s)	1293, 1368, 1487, 1528, 1567, 1757, 1885
BveI	ACCTGC	2 cut(s)	1176, 1360
Cac8I	GCNNGC	3 cut(s)	77, 207, 1179
CaiI	CAGNNNCTG	3 cut(s)	236, 1547, 1904
CfoI	GCGC	3 cut(s)	184, 769, 1779
Cfr13I	GGNCC	6 cut(s)	550, 737, 818, 1511, 1727, 1969
CseI	GACGC	1 cut(s)	758
CsiI	ACCWGGT	2 cut(s)	375, 742
Csp6I	GTAC	6 cut(s)	175, 412, 747, 1188, 1349, 1815
CviQI	GTAC	6 cut(s)	175, 412, 747, 1188, 1349, 1815
DdeI	CTNAG	9 cut(s)	142, 229, 315, 625, 830, 885, 1262, 1593, 1837
DraIII	CACNNNGTG	1 cut(s)	527
EaeI	YGGCCR	1 cut(s)	39
EagI	CGGCCG	1 cut(s)	39
Eam1104I	CTCTTC	3 cut(s)	456, 649, 1290
EarI	CTCTTC	3 cut(s)	456, 649, 1290
EciI	GGCGGA	1 cut(s)	243
Ecl136II	GAGCTC	1 cut(s)	2080
EclXI	CGGCCG	1 cut(s)	39
Eco130I	CCWWGG	3 cut(s)	415, 1314, 1730
Eco24I	GRGCYC	1 cut(s)	2082
Eco32I	GATATC	1 cut(s)	1749
Eco47I	GGWCC	4 cut(s)	737, 818, 1511, 1727
Eco52I	CGGCCG	1 cut(s)	39
Eco53kI	GAGCTC	1 cut(s)	2080
Eco88I	CYCGRG	1 cut(s)	493
Eco91I	GGTNACC	1 cut(s)	1309
EcoICRI	GAGCTC	1 cut(s)	2080
EcoO109I	RGGNCCY	2 cut(s)	1511, 1969
EcoO65I	GGTNACC	1 cut(s)	1309
EcoRII	CCWGG	6 cut(s)	375, 742, 1048, 1686, 2022, 2103
EcoRV	GATATC	1 cut(s)	1749
EcoT14I	CCWWGG	3 cut(s)	415, 1314, 1730
EcoT22I	ATGCAT	1 cut(s)	1660
EcoT38I	GRGCYC	1 cut(s)	2082
ErhI	CCWWGG	3 cut(s)	415, 1314, 1730
FaqI	GGGAC	2 cut(s)	325, 433
FbaI	TGATCA	1 cut(s)	892
FblI	GTMKAC	1 cut(s)	467
Fnu4HI	GCNGC	9 cut(s)	42, 80, 728, 1182, 1542, 1905, 1959, 1962, 2019
FokI	GGATG	3 cut(s)	1283, 1304, 1331
FriOI	GRGCYC	1 cut(s)	2082
Fsp4HI	GCNGC	9 cut(s)	42, 80, 728, 1182, 1542, 1905, 1959, 1962, 2019
FspBI	CTAG	9 cut(s)	125, 210, 570, 701, 978, 1515, 1538, 1709, 1919
GlaI	GCGC	3 cut(s)	183, 768, 1778
GluI	GCNGC	9 cut(s)	42, 80, 728, 1182, 1542, 1905, 1959, 1962, 2019
GsuI	CTGGAG	2 cut(s)	74, 2087
HaeIII	GGCC	4 cut(s)	41, 552, 1048, 1970
HapII	CCGG	3 cut(s)	8, 38, 108
HgaI	GACGC	1 cut(s)	758
HhaI	GCGC	3 cut(s)	184, 769, 1779
Hin1I	GRCGYC	1 cut(s)	1054
Hin6I	GCGC	3 cut(s)	182, 767, 1777
HinP1I	GCGC	3 cut(s)	182, 767, 1777
HincII	GTYRAC	1 cut(s)	1165
HindII	GTYRAC	1 cut(s)	1165
HindIII	AAGCTT	1 cut(s)	1799
HinfI	GANTC	6 cut(s)	140, 193, 227, 464, 1108, 1841
HpaII	CCGG	3 cut(s)	8, 38, 108
HphI	GGTGA	5 cut(s)	19, 49, 236, 857, 2039
Hpy166II	GTNNAC	7 cut(s)	249, 468, 997, 1012, 1165, 1334, 1631
Hpy188I	TCNGA	6 cut(s)	132, 145, 460, 562, 653, 762
Hpy8I	GTNNAC	7 cut(s)	249, 468, 997, 1012, 1165, 1334, 1631
Hpy99I	CGWCG	3 cut(s)	16, 19, 204
HpyAV	CCTTC	9 cut(s)	106, 237, 611, 1129, 1211, 1502, 1778, 1873, 1906
HpyCH4III	ACNGT	6 cut(s)	439, 1549, 1562, 1880, 1926, 2113
HpyCH4IV	ACGT	3 cut(s)	556, 1054, 1330
HpyF10VI	GCNNNNNNNGC	8 cut(s)	50, 134, 188, 621, 638, 1361, 1637, 1967
HpyF3I	CTNAG	9 cut(s)	142, 229, 315, 625, 830, 885, 1262, 1593, 1837
HpySE526I	ACGT	3 cut(s)	556, 1054, 1330
Hsp92I	GRCGYC	1 cut(s)	1054
HspAI	GCGC	3 cut(s)	182, 767, 1777
Ksp22I	TGATCA	1 cut(s)	892
LguI	GCTCTTC	1 cut(s)	649
LmnI	GCTCC	3 cut(s)	10, 1459, 1770
Lsp1109I	GCAGC	7 cut(s)	714, 1168, 1553, 1891, 1948, 1970, 2030
LweI	GCATC	9 cut(s)	322, 871, 940, 1024, 1376, 1563, 1645, 1752, 1945
MabI	ACCWGGT	2 cut(s)	375, 742
MaeI	CTAG	9 cut(s)	125, 210, 570, 701, 978, 1515, 1538, 1709, 1919
MaeII	ACGT	3 cut(s)	556, 1054, 1330
MaeIII	GTNAC	8 cut(s)	25, 224, 688, 1017, 1309, 1492, 1704, 1870
MbiI	CCGCTC	1 cut(s)	82
MfeI	CAATTG	1 cut(s)	1845
MflI	RGATCY	2 cut(s)	799, 868
MhlI	GDGCHC	3 cut(s)	1336, 1633, 2082
MlyI	GAGTC	4 cut(s)	134, 221, 473, 1835
Mph1103I	ATGCAT	1 cut(s)	1660
MslI	CAYNNNNRTG	1 cut(s)	2091
MspA1I	CMGCKG	3 cut(s)	222, 389, 1961
MspI	CCGG	3 cut(s)	8, 38, 108
MspR9I	CCNGG	7 cut(s)	108, 377, 744, 1050, 1688, 2024, 2105
MunI	CAATTG	1 cut(s)	1845
Mva1269I	GAATGC	1 cut(s)	193
MvaI	CCWGG	6 cut(s)	377, 744, 1050, 1688, 2024, 2105
MvnI	CGCG	1 cut(s)	769
MwoI	GCNNNNNNNGC	8 cut(s)	50, 134, 188, 621, 638, 1361, 1637, 1967
NciI	CCSGG	1 cut(s)	108
NcoI	CCATGG	2 cut(s)	415, 1314
NlaIV	GGNNCC	6 cut(s)	6, 112, 340, 522, 631, 1363
NmeAIII	GCCGAG	2 cut(s)	658, 1568
NmuCI	GTSAC	3 cut(s)	25, 224, 1870
NsiI	ATGCAT	1 cut(s)	1660
NspI	RCATGY	5 cut(s)	209, 689, 716, 929, 1500
PaeI	GCATGC	1 cut(s)	209
PaeR7I	CTCGAG	1 cut(s)	493
PasI	CCCWGGG	1 cut(s)	2023
PciI	ACATGT	1 cut(s)	685
PciSI	GCTCTTC	1 cut(s)	649
PctI	GAATGC	1 cut(s)	193
PfeI	GAWTC	2 cut(s)	193, 1108
PflFI	GACNNNGTC	1 cut(s)	230
PfoI	TCCNGGA	2 cut(s)	1686, 2103
PkrI	GCNGC	9 cut(s)	43, 81, 729, 1183, 1543, 1906, 1960, 1963, 2020
PleI	GAGTC	4 cut(s)	134, 221, 472, 1835
PpsI	GAGTC	4 cut(s)	134, 221, 472, 1835
Ppu21I	YACGTR	1 cut(s)	1331
PpuMI	RGGWCCY	1 cut(s)	1511
PscI	ACATGT	1 cut(s)	685
Psp124BI	GAGCTC	1 cut(s)	2082
Psp1406I	AACGTT	1 cut(s)	556
Psp5II	RGGWCCY	1 cut(s)	1511
Psp6I	CCWGG	6 cut(s)	375, 742, 1048, 1686, 2022, 2103
PspEI	GGTNACC	1 cut(s)	1309
PspGI	CCWGG	6 cut(s)	375, 742, 1048, 1686, 2022, 2103
PspN4I	GGNNCC	6 cut(s)	6, 112, 340, 522, 631, 1363
PspPI	GGNCC	6 cut(s)	550, 737, 818, 1511, 1727, 1969
PspPPI	RGGWCCY	1 cut(s)	1511
PstI	CTGCAG	1 cut(s)	1966
PstNI	CAGNNNCTG	3 cut(s)	236, 1547, 1904
PsuI	RGATCY	2 cut(s)	799, 868
PsyI	GACNNNGTC	1 cut(s)	230
PvuII	CAGCTG	2 cut(s)	389, 1961
RsaI	GTAC	6 cut(s)	176, 413, 748, 1189, 1350, 1816
RsaNI	GTAC	6 cut(s)	175, 412, 747, 1188, 1349, 1815
RseI	CAYNNNNRTG	1 cut(s)	2091
SacI	GAGCTC	1 cut(s)	2082
SapI	GCTCTTC	1 cut(s)	649
SatI	GCNGC	9 cut(s)	42, 80, 728, 1182, 1542, 1905, 1959, 1962, 2019
Sau96I	GGNCC	6 cut(s)	550, 737, 818, 1511, 1727, 1969
SchI	GAGTC	4 cut(s)	134, 221, 473, 1835
ScrFI	CCNGG	7 cut(s)	108, 377, 744, 1050, 1688, 2024, 2105
SduI	GDGCHC	3 cut(s)	1336, 1633, 2082
SexAI	ACCWGGT	2 cut(s)	375, 742
SfaNI	GCATC	9 cut(s)	322, 871, 940, 1024, 1376, 1563, 1645, 1752, 1945
SfcI	CTRYAG	2 cut(s)	1198, 1962
Sfr274I	CTCGAG	1 cut(s)	493
SinI	GGWCC	4 cut(s)	737, 818, 1511, 1727
SlaI	CTCGAG	1 cut(s)	493
SmiMI	CAYNNNNRTG	1 cut(s)	2091
SmlI	CTYRAG	2 cut(s)	493, 1772
SmoI	CTYRAG	2 cut(s)	493, 1772
SphI	GCATGC	1 cut(s)	209
SsiI	CCGC	4 cut(s)	42, 80, 222, 254
SspI	AATATT	1 cut(s)	1696
SspMI	CTAG	9 cut(s)	125, 210, 570, 701, 978, 1515, 1538, 1709, 1919
SstI	GAGCTC	1 cut(s)	2082
StyD4I	CCNGG	7 cut(s)	106, 375, 742, 1048, 1686, 2022, 2103
StyI	CCWWGG	3 cut(s)	415, 1314, 1730
TaaI	ACNGT	6 cut(s)	439, 1549, 1562, 1880, 1926, 2113
TaiI	ACGT	3 cut(s)	559, 1057, 1333
TaqI	TCGA	8 cut(s)	84, 347, 494, 974, 1557, 2069, 2082, 2116
TauI	GCSGC	2 cut(s)	44, 82
TfiI	GAWTC	2 cut(s)	193, 1108
TscAI	CASTG	7 cut(s)	1293, 1375, 1494, 1528, 1567, 1764, 1885
TseFI	GTSAC	3 cut(s)	25, 224, 1870
TseI	GCWGC	7 cut(s)	727, 1181, 1541, 1904, 1958, 1961, 2018
Tsp45I	GTSAC	3 cut(s)	25, 224, 1870
TspRI	CASTG	7 cut(s)	1293, 1375, 1494, 1528, 1567, 1764, 1885
Tth111I	GACNNNGTC	1 cut(s)	230
VneI	GTGCAC	2 cut(s)	1332, 1629
VpaK11BI	GGWCC	4 cut(s)	737, 818, 1511, 1727
XapI	RAATTY	3 cut(s)	593, 1116, 1741
XceI	RCATGY	5 cut(s)	209, 689, 716, 929, 1500
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1453
XhoI	CTCGAG	1 cut(s)	493
XmiI	GTMKAC	1 cut(s)	467
XspI	CTAG	9 cut(s)	125, 210, 570, 701, 978, 1515, 1538, 1709, 1919
ZraI	GACGTC	1 cut(s)	1055
Zsp2I	ATGCAT	1 cut(s)	1660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.