Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003337

Physical Location & Seq

Genomic Coordinates Reverse (-)

29586824 .. 29590593

Gene Structure 3770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g29040.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGCGATCAAATCCAGCTGTTCGTTTTGGGCTTTTATTTGGGCCTCTAGAAACACAAAAATCCAAAAATTTCAAAGTTCATCGTCTCTTTCCGATCAAGGCAGAAAAATTAGACAAAAACTTCATCATCTCCATTTCTTACAACCAAAGGAACCAGAAATCCTCCACCCAGAACTCTTTCCGTCTCCGATCAAAAAATGGCTGGCCGGTTCGGCTTATCCTCCTCTTCGCCAGCGGTGATGATGACCGTCACCAACACCCCGGCCCCAGATCTCGCTTTAACCAATCTCGCCTACTGCTCCCCCACCGATCTCCAGAACTTCGCCATCCCCGGCACCAAGCTCAATCTCGCTTCCGTCGGCGACTCATTCGTCCTCACCAAACTGGTCATCCAAGCATACAGAGCGGCCACATTGCGCTGAACGCAATCCAACGGCGACATGCTAGGGTTTCTAGTGGCGATTCTATCTCTGTGAGCAGATTTGTTCCACCGGAGGATTTCAATCTGGCCCTGCTTACGCTGGATTTGGAGTTTGTGAAGAAAGGCACTAAGAGTGAACAGGTTGACGCTGTTGCCCTGTCAAAGCAGCTTAAGAAAAGGTTTATCAACCAGGTCATGACGGCTGGACAAAGAGTATCATTTGAGTTTCAGGGGATCAACTACATTTTTACTGTCAATCAAGCTGCAGTAGAGGGACAAGAAAAGTCTAATAATGGTATTGAAAGAGGGATGATTGTGAATGATACATATTTCATCTTTGAAACATCAAATGCAAGTGGAATAAAGATCGTAAATCAGCGTGAAGCTGCAAGTAGCAACATTTTCAGGCACAAGGAGTTTAATCTTCAAACGCTTGGAATTGGTGGCTTAGGTGCTGAGTTTGCAGATATATTTCGAAGAGCTTTTGCATCCCGTGTATTCCCTCCTCATGTGACAAATAAATTAGGGATCAAGCATGTAAAGGGTATGCTGCTTTATGGGCCACCTGGTACTGGAAAAACTCTCATGGCTCGTCAAATTGGAAAGATGTTGAACGGGAAAGAACCAAAGATTGTTAATGGCCCTGAAGTTTTGAGCAAGTTCGTTGGTGAAACTGAGAAGAATGTTAGGGATCGATTTGCCGATGCTGAGAATGATCAAAGGGCTCGCGGAGACCAGAGTGACTTGCATGTGATAATCTTTGATGAAATTGATGCTATTTGTAAGTCAAGAGCGATCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 ko04727 ko04962 map04138 map04721 map04727 map04962

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N

Protein Analysis

408

Amino Acids

46.07

Weight (kDa)

10.52

Isoelectric Point (pI)

38.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04910
fragaria_vesca	FvH4_3g09180 FvH4_4g01371 FvH4_4g01380
malus_domestica	MD05G1312500.v1.1 MD05G1339600.v1.1 MD10G1294300.v1.1
prunus_persica	Prupe.4G047600_v2.0.a1
pyrus_communis	pycom05g29040 pycom10g24600
rosa_chinensis	RchiOBHm_Chr4g0419821 RchiOBHm_Chr5g0005931 RchiOBHm_Chr5g0005941 RchiOBHm_Chr5g0008441
rosa_laevigata	RLG00000031340 RLG00000031347 RLG00000031352 RLG00000031389 RLG00000031572
rosa_multiflora	Rmu_sc0000720.1_g000006 Rmu_sc0004326.1_g000001 Rmu_sc0006414.1_g000006
rosa_roxburghii	Rroxscaffold_1G00068050
rosa_rugosa	Rorug04G0435800
rosa_samantha	Rh4AG222000 Rh4BG224200 Rh4CG235100 Rh4DG221000 Rh5AG064700 Rh5BG061700 Rh5CG071500 Rh5CG071600 Rh5CG071800 Rh5CG071900
rosa_wichuraiana	Rw4G019100 Rw5G005630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	369
AccB1I	GGYRCC	1 cut(s)	333
AccBSI	CCGCTC	1 cut(s)	405
AccII	CGCG	1 cut(s)	1149
AciI	CCGC	3 cut(s)	234, 405, 1149
AclWI	GGATC	3 cut(s)	662, 956, 1119
AcoI	YGGCCR	2 cut(s)	203, 406
AcsI	RAATTY	1 cut(s)	67
AcuI	CTGAAG	1 cut(s)	1086
AfaI	GTAC	1 cut(s)	991
AfiI	CCNNNNNNNGG	1 cut(s)	992
AflII	CTTAAG	1 cut(s)	590
AgsI	TTSAA	6 cut(s)	73, 502, 722, 761, 848, 1033
AjnI	CCWGG	2 cut(s)	609, 985
AloI	GAACNNNNNNTCC	2 cut(s)	143, 175
AluBI	AGCT	6 cut(s)	17, 341, 589, 683, 806, 902
AluI	AGCT	6 cut(s)	17, 341, 589, 683, 806, 902
Alw26I	GTCTC	3 cut(s)	89, 188, 1146
AlwI	GGATC	3 cut(s)	662, 956, 1119
AoxI	GGCC	7 cut(s)	41, 203, 262, 406, 507, 980, 1060
ApeKI	GCWGC	4 cut(s)	586, 683, 806, 970
ApoI	RAATTY	1 cut(s)	67
Asp700I	GAANNNNTTC	1 cut(s)	176
AspLEI	GCGC	1 cut(s)	418
AspS9I	GGNCC	5 cut(s)	41, 263, 508, 980, 1061
AsuC2I	CCSGG	2 cut(s)	261, 331
AsuHPI	GGTGA	4 cut(s)	242, 248, 368, 1100
AsuII	TTCGAA	1 cut(s)	895
BanI	GGYRCC	1 cut(s)	333
BanII	GRGCYC	1 cut(s)	1147
BbvI	GCAGC	4 cut(s)	598, 670, 793, 957
BccI	CCATC	1 cut(s)	333
BceAI	ACGGC	2 cut(s)	449, 636
BciT130I	CCWGG	2 cut(s)	611, 987
BclI	TGATCA	1 cut(s)	1135
BcnI	CCSGG	2 cut(s)	261, 331
BcoDI	GTCTC	3 cut(s)	89, 188, 1146
BfaI	CTAG	4 cut(s)	47, 444, 453, 1222
BfmI	CTRYAG	1 cut(s)	684
BfrI	CTTAAG	1 cut(s)	590
BglI	GCCNNNNNGGC	1 cut(s)	211
BglII	AGATCT	1 cut(s)	269
BisI	GCNGC	5 cut(s)	406, 587, 684, 807, 971
BlsI	GCNGC	5 cut(s)	407, 588, 685, 808, 972
Bme1390I	CCNGG	4 cut(s)	261, 331, 611, 987
BmgT120I	GGNCC	5 cut(s)	41, 263, 508, 980, 1061
BmiI	GGNNCC	3 cut(s)	152, 265, 335
BmrFI	CCNGG	4 cut(s)	261, 331, 611, 987
BmsI	GCATC	3 cut(s)	917, 1114, 1183
BpmI	CTGGAG	1 cut(s)	297
Bpu10I	CCTNAGC	1 cut(s)	868
Bpu14I	TTCGAA	1 cut(s)	895
BpuMI	CCSGG	2 cut(s)	261, 331
Bsa29I	ATCGAT	1 cut(s)	1114
BsaBI	GATNNNNATC	1 cut(s)	501
BsaI	GGTCTC	1 cut(s)	1146
BsaJI	CCNNGG	2 cut(s)	259, 329
BsaWI	WCCGGW	1 cut(s)	490
Bsc4I	CCNNNNNNNGG	1 cut(s)	992
Bse118I	RCCGGY	1 cut(s)	205
Bse1I	ACTGG	2 cut(s)	388, 997
Bse3DI	GCAATG	1 cut(s)	411
Bse8I	GATNNNNATC	1 cut(s)	501
BseBI	CCWGG	2 cut(s)	611, 987
BseCI	ATCGAT	1 cut(s)	1114
BseDI	CCNNGG	2 cut(s)	259, 329
BseGI	GGATG	4 cut(s)	325, 388, 735, 908
BseJI	GATNNNNATC	1 cut(s)	501
BseLI	CCNNNNNNNGG	1 cut(s)	992
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	3 cut(s)	867, 1086, 1119
BseNI	ACTGG	2 cut(s)	388, 997
BseRI	GAGGAG	2 cut(s)	212, 915
BseXI	GCAGC	4 cut(s)	598, 670, 793, 957
Bsh1236I	CGCG	1 cut(s)	1149
BshFI	GGCC	7 cut(s)	43, 205, 264, 408, 509, 982, 1062
BshNI	GGYRCC	1 cut(s)	333
BshVI	ATCGAT	1 cut(s)	1114
BsiSI	CCGG	4 cut(s)	206, 261, 331, 491
BslFI	GGGAC	1 cut(s)	708
BslI	CCNNNNNNNGG	1 cut(s)	992
BsmAI	GTCTC	3 cut(s)	89, 188, 1146
BsmBI	CGTCTC	2 cut(s)	89, 188
BsmFI	GGGAC	1 cut(s)	708
BsnI	GGCC	7 cut(s)	43, 205, 264, 408, 509, 982, 1062
Bso31I	GGTCTC	1 cut(s)	1146
Bsp119I	TTCGAA	1 cut(s)	895
Bsp1286I	GDGCHC	1 cut(s)	1147
BspACI	CCGC	3 cut(s)	234, 405, 1149
BspANI	GGCC	7 cut(s)	43, 205, 264, 408, 509, 982, 1062
BspCNI	CTCAG	3 cut(s)	868, 1087, 1120
BspDI	ATCGAT	1 cut(s)	1114
BspFNI	CGCG	1 cut(s)	1149
BspHI	TCATGA	1 cut(s)	615
BspLI	GGNNCC	3 cut(s)	152, 265, 335
BspMAI	CTGCAG	1 cut(s)	688
BspPI	GGATC	3 cut(s)	662, 956, 1119
BspQI	GCTCTTC	1 cut(s)	892
BspT104I	TTCGAA	1 cut(s)	895
BspT107I	GGYRCC	1 cut(s)	333
BspTI	CTTAAG	1 cut(s)	590
BspTNI	GGTCTC	1 cut(s)	1146
BsrBI	CCGCTC	1 cut(s)	405
BsrDI	GCAATG	1 cut(s)	411
BsrFI	RCCGGY	1 cut(s)	205
BsrI	ACTGG	2 cut(s)	388, 997
BssAI	RCCGGY	1 cut(s)	205
BssECI	CCNNGG	2 cut(s)	259, 329
Bst2UI	CCWGG	2 cut(s)	611, 987
Bst4CI	ACNGT	2 cut(s)	248, 673
Bst6I	CTCTTC	2 cut(s)	230, 892
BstAFI	CTTAAG	1 cut(s)	590
BstBI	TTCGAA	1 cut(s)	895
BstC8I	GCNNGC	3 cut(s)	203, 232, 1147
BstDEI	CTNAG	5 cut(s)	549, 868, 876, 1095, 1128
BstF5I	GGATG	4 cut(s)	325, 388, 735, 908
BstFNI	CGCG	1 cut(s)	1149
BstHHI	GCGC	1 cut(s)	418
BstMAI	GTCTC	3 cut(s)	89, 188, 1146
BstMWI	GCNNNNNNNGC	5 cut(s)	211, 402, 422, 881, 979
BstNI	CCWGG	2 cut(s)	611, 987
BstNSI	RCATGY	3 cut(s)	443, 959, 1172
BstSCI	CCNGG	4 cut(s)	259, 329, 609, 985
BstSFI	CTRYAG	1 cut(s)	684
BstUI	CGCG	1 cut(s)	1149
BstV1I	GCAGC	4 cut(s)	598, 670, 793, 957
BstX2I	RGATCY	1 cut(s)	269
BstYI	RGATCY	1 cut(s)	269
Bsu15I	ATCGAT	1 cut(s)	1114
BsuRI	GGCC	7 cut(s)	43, 205, 264, 408, 509, 982, 1062
BsuTUI	ATCGAT	1 cut(s)	1114
BtsCI	GGATG	4 cut(s)	325, 388, 735, 908
Cac8I	GCNNGC	3 cut(s)	203, 232, 1147
CciI	TCATGA	1 cut(s)	615
CfoI	GCGC	1 cut(s)	418
Cfr10I	RCCGGY	1 cut(s)	205
Cfr13I	GGNCC	5 cut(s)	41, 263, 508, 980, 1061
ClaI	ATCGAT	1 cut(s)	1114
CseI	GACGC	1 cut(s)	575
CsiI	ACCWGGT	2 cut(s)	609, 985
Csp6I	GTAC	1 cut(s)	990
CviAII	CATG	6 cut(s)	440, 616, 929, 956, 1006, 1169
CviQI	GTAC	1 cut(s)	990
DdeI	CTNAG	5 cut(s)	549, 868, 876, 1095, 1128
DrdI	GACNNNNNNGTC	1 cut(s)	369
DseDI	GACNNNNNNGTC	1 cut(s)	369
EaeI	YGGCCR	2 cut(s)	203, 406
Eam1104I	CTCTTC	2 cut(s)	230, 892
EarI	CTCTTC	2 cut(s)	230, 892
Eco24I	GRGCYC	1 cut(s)	1147
Eco31I	GGTCTC	1 cut(s)	1146
Eco57I	CTGAAG	1 cut(s)	1086
EcoRII	CCWGG	2 cut(s)	609, 985
EcoT38I	GRGCYC	1 cut(s)	1147
Esp3I	CGTCTC	2 cut(s)	89, 188
FaeI	CATG	6 cut(s)	443, 619, 932, 959, 1009, 1172
FaqI	GGGAC	1 cut(s)	708
FatI	CATG	6 cut(s)	439, 615, 928, 955, 1005, 1168
FbaI	TGATCA	1 cut(s)	1135
Fnu4HI	GCNGC	5 cut(s)	406, 587, 684, 807, 971
FokI	GGATG	4 cut(s)	312, 375, 742, 895
FriOI	GRGCYC	1 cut(s)	1147
Fsp4HI	GCNGC	5 cut(s)	406, 587, 684, 807, 971
FspBI	CTAG	4 cut(s)	47, 444, 453, 1222
GlaI	GCGC	1 cut(s)	417
GluI	GCNGC	5 cut(s)	406, 587, 684, 807, 971
GsuI	CTGGAG	1 cut(s)	297
HaeIII	GGCC	7 cut(s)	43, 205, 264, 408, 509, 982, 1062
HapII	CCGG	4 cut(s)	206, 261, 331, 491
HgaI	GACGC	1 cut(s)	575
HhaI	GCGC	1 cut(s)	418
Hin1II	CATG	6 cut(s)	443, 619, 932, 959, 1009, 1172
Hin6I	GCGC	1 cut(s)	416
HinP1I	GCGC	1 cut(s)	416
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HinfI	GANTC	2 cut(s)	363, 461
HpaII	CCGG	4 cut(s)	206, 261, 331, 491
HphI	GGTGA	4 cut(s)	242, 248, 368, 1100
Hpy166II	GTNNAC	2 cut(s)	557, 565
Hpy188I	TCNGA	2 cut(s)	93, 188
Hpy188III	TCNNGA	4 cut(s)	47, 314, 616, 1209
Hpy8I	GTNNAC	2 cut(s)	557, 565
Hpy99I	CGWCG	1 cut(s)	360
HpyCH4III	ACNGT	2 cut(s)	248, 673
HpyCH4V	TGCA	6 cut(s)	686, 773, 809, 884, 908, 1168
HpyF10VI	GCNNNNNNNGC	5 cut(s)	211, 402, 422, 881, 979
HpyF3I	CTNAG	5 cut(s)	549, 868, 876, 1095, 1128
Hsp92II	CATG	6 cut(s)	443, 619, 932, 959, 1009, 1172
HspAI	GCGC	1 cut(s)	416
Ksp22I	TGATCA	1 cut(s)	1135
LguI	GCTCTTC	1 cut(s)	892
LmnI	GCTCC	1 cut(s)	303
Lsp1109I	GCAGC	4 cut(s)	598, 670, 793, 957
LweI	GCATC	3 cut(s)	917, 1114, 1183
MabI	ACCWGGT	2 cut(s)	609, 985
MaeI	CTAG	4 cut(s)	47, 444, 453, 1222
MaeIII	GTNAC	3 cut(s)	248, 931, 1160
MbiI	CCGCTC	1 cut(s)	405
MboII	GAAGA	5 cut(s)	217, 550, 836, 909, 1111
MflI	RGATCY	1 cut(s)	269
MhlI	GDGCHC	1 cut(s)	1147
MluCI	AATT	6 cut(s)	67, 107, 858, 941, 1017, 1188
MlyI	GAGTC	1 cut(s)	357
MmeI	TCCRAC	1 cut(s)	454
MroXI	GAANNNNTTC	1 cut(s)	176
MseI	TTAA	4 cut(s)	279, 591, 840, 1056
MspA1I	CMGCKG	2 cut(s)	17, 234
MspCI	CTTAAG	1 cut(s)	590
MspI	CCGG	4 cut(s)	206, 261, 331, 491
MspR9I	CCNGG	4 cut(s)	261, 331, 611, 987
MvaI	CCWGG	2 cut(s)	611, 987
MvnI	CGCG	1 cut(s)	1149
MwoI	GCNNNNNNNGC	5 cut(s)	211, 402, 422, 881, 979
NciI	CCSGG	2 cut(s)	261, 331
NlaIII	CATG	6 cut(s)	443, 619, 932, 959, 1009, 1172
NlaIV	GGNNCC	3 cut(s)	152, 265, 335
NmuCI	GTSAC	3 cut(s)	248, 931, 1160
NspI	RCATGY	3 cut(s)	443, 959, 1172
NspV	TTCGAA	1 cut(s)	895
PagI	TCATGA	1 cut(s)	615
PciSI	GCTCTTC	1 cut(s)	892
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	461
PkrI	GCNGC	5 cut(s)	407, 588, 685, 808, 972
PleI	GAGTC	1 cut(s)	357
PpsI	GAGTC	1 cut(s)	357
Psp6I	CCWGG	2 cut(s)	609, 985
PspGI	CCWGG	2 cut(s)	609, 985
PspN4I	GGNNCC	3 cut(s)	152, 265, 335
PspPI	GGNCC	5 cut(s)	41, 263, 508, 980, 1061
PstI	CTGCAG	1 cut(s)	688
PsuI	RGATCY	1 cut(s)	269
PvuII	CAGCTG	1 cut(s)	17
RsaI	GTAC	1 cut(s)	991
RsaNI	GTAC	1 cut(s)	990
SapI	GCTCTTC	1 cut(s)	892
SaqAI	TTAA	4 cut(s)	279, 591, 840, 1056
SatI	GCNGC	5 cut(s)	406, 587, 684, 807, 971
Sau96I	GGNCC	5 cut(s)	41, 263, 508, 980, 1061
SchI	GAGTC	1 cut(s)	357
ScrFI	CCNGG	4 cut(s)	261, 331, 611, 987
SduI	GDGCHC	1 cut(s)	1147
SexAI	ACCWGGT	2 cut(s)	609, 985
SfaNI	GCATC	3 cut(s)	917, 1114, 1183
SfcI	CTRYAG	1 cut(s)	684
SfuI	TTCGAA	1 cut(s)	895
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
Sse9I	AATT	6 cut(s)	67, 107, 858, 941, 1017, 1188
SsiI	CCGC	3 cut(s)	234, 405, 1149
SspMI	CTAG	4 cut(s)	47, 444, 453, 1222
StyD4I	CCNGG	4 cut(s)	259, 329, 609, 985
TaaI	ACNGT	2 cut(s)	248, 673
TaqI	TCGA	2 cut(s)	895, 1114
TasI	AATT	6 cut(s)	67, 107, 858, 941, 1017, 1188
TauI	GCSGC	1 cut(s)	408
TfiI	GAWTC	1 cut(s)	461
Tru1I	TTAA	4 cut(s)	279, 591, 840, 1056
Tru9I	TTAA	4 cut(s)	279, 591, 840, 1056
TseFI	GTSAC	3 cut(s)	248, 931, 1160
TseI	GCWGC	4 cut(s)	586, 683, 806, 970
Tsp45I	GTSAC	3 cut(s)	248, 931, 1160
TspDTI	ATGAA	4 cut(s)	68, 112, 742, 1200
TspGWI	ACGGA	2 cut(s)	170, 344
Vha464I	CTTAAG	1 cut(s)	590
XapI	RAATTY	1 cut(s)	67
XbaI	TCTAGA	1 cut(s)	46
XceI	RCATGY	3 cut(s)	443, 959, 1172
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	4 cut(s)	47, 444, 453, 1222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.