Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003337

Physical Location & Seq

Genomic Coordinates Reverse (-)

3718771 .. 3719967

Gene Structure 1197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28709

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGCTACTTGTGGAGCAAGTTAAATCAAGTGAGAGAAGCCCTCTTGTTACATGCCTTTTGGAAGGTCCTAGTGGCAGTGGTAAATCTTCACTGGCAGCTACTGTTGGCATCGACAGTGATTTCCCCTATGTTAAGATTATCTCGGCTGAGGCCATGATTGGTCTTCAAGAGAGCACTAAATGTGCGCAAATCGCAAAGGTTTTTGAAGATGCATACAAGTCACCATTAAGCATTGAAAGGGCAGATCAGTTGGTGAAAATTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 ko04727 ko04962 map04138 map04721 map04727 map04962

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N

Protein Analysis

88

Amino Acids

9.43

Weight (kDa)

5.26

Isoelectric Point (pI)

48.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04910
fragaria_vesca	FvH4_3g09180 FvH4_4g01371 FvH4_4g01380
malus_domestica	MD05G1312500.v1.1 MD05G1339600.v1.1 MD10G1294300.v1.1
prunus_persica	Prupe.4G047600_v2.0.a1
pyrus_communis	pycom05g29040 pycom10g24600
rosa_chinensis	RchiOBHm_Chr4g0419821 RchiOBHm_Chr5g0005931 RchiOBHm_Chr5g0005941 RchiOBHm_Chr5g0008441
rosa_laevigata	RLG00000031340 RLG00000031347 RLG00000031352 RLG00000031389 RLG00000031572
rosa_multiflora	Rmu_sc0000720.1_g000006 Rmu_sc0004326.1_g000001 Rmu_sc0006414.1_g000006
rosa_roxburghii	Rroxscaffold_1G00068050
rosa_rugosa	Rorug04G0435800
rosa_samantha	Rh4AG222000 Rh4BG224200 Rh4CG235100 Rh4DG221000 Rh5AG064700 Rh5BG061700 Rh5CG071500 Rh5CG071600 Rh5CG071800 Rh5CG071900
rosa_wichuraiana	Rw4G019100 Rw5G005630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	186
AcsI	RAATTY	1 cut(s)	258
AgsI	TTSAA	3 cut(s)	167, 206, 236
AluBI	AGCT	1 cut(s)	98
AluI	AGCT	1 cut(s)	98
Alw21I	GWGCWC	1 cut(s)	176
AlwNI	CAGNNNCTG	1 cut(s)	101
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	95
ApoI	RAATTY	1 cut(s)	258
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	65
AsuHPI	GGTGA	2 cut(s)	213, 265
AvaII	GGWCC	1 cut(s)	65
BbsI	GAAGAC	1 cut(s)	155
Bbv12I	GWGCWC	1 cut(s)	176
BbvCI	CCTCAGC	1 cut(s)	147
BbvI	GCAGC	1 cut(s)	107
BfaI	CTAG	1 cut(s)	69
BisI	GCNGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	97
Bme18I	GGWCC	1 cut(s)	65
BmgT120I	GGNCC	1 cut(s)	65
BmsI	GCATC	2 cut(s)	117, 199
BpiI	GAAGAC	1 cut(s)	155
BplI	GAGNNNNNCTC	2 cut(s)	25, 57
Bpu10I	CCTNAGC	1 cut(s)	147
Bse1I	ACTGG	1 cut(s)	96
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	107
BshFI	GGCC	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp143I	GATC	1 cut(s)	244
BspANI	GGCC	1 cut(s)	152
BspCNI	CTCAG	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	96
BssMI	GATC	1 cut(s)	244
Bst4CI	ACNGT	2 cut(s)	103, 116
BstDEI	CTNAG	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	1 cut(s)	247
BstMBI	GATC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstNSI	RCATGY	1 cut(s)	54
BstV1I	GCAGC	1 cut(s)	107
BstV2I	GAAGAC	1 cut(s)	155
BsuRI	GGCC	1 cut(s)	152
BtsI	GCAGTG	1 cut(s)	82
BtsIMutI	CAGTG	4 cut(s)	82, 89, 121, 262
CaiI	CAGNNNCTG	1 cut(s)	101
CfoI	GCGC	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	65
CviAII	CATG	2 cut(s)	51, 154
CviJI	RGCY	4 cut(s)	39, 98, 146, 152
CviKI_1	RGCY	4 cut(s)	39, 98, 146, 152
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	65
EcoT22I	ATGCAT	1 cut(s)	214
FaeI	CATG	2 cut(s)	54, 157
FaiI	YATR	4 cut(s)	52, 129, 155, 214
FatI	CATG	2 cut(s)	50, 153
Fnu4HI	GCNGC	1 cut(s)	96
Fsp4HI	GCNGC	1 cut(s)	96
FspBI	CTAG	1 cut(s)	69
FspI	TGCGCA	1 cut(s)	186
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	152
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	2 cut(s)	54, 157
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HphI	GGTGA	2 cut(s)	213, 265
Hpy188III	TCNNGA	1 cut(s)	167
HpyAV	CCTTC	1 cut(s)	56
HpyCH4III	ACNGT	2 cut(s)	103, 116
HpyCH4V	TGCA	1 cut(s)	212
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpyF3I	CTNAG	1 cut(s)	147
Hsp92II	CATG	2 cut(s)	54, 157
HspAI	GCGC	1 cut(s)	185
Kzo9I	GATC	1 cut(s)	244
LmnI	GCTCC	1 cut(s)	13
LpnPI	CCDG	1 cut(s)	77
Lsp1109I	GCAGC	1 cut(s)	107
LweI	GCATC	2 cut(s)	117, 199
MaeI	CTAG	1 cut(s)	69
MaeIII	GTNAC	2 cut(s)	46, 219
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MboII	GAAGA	3 cut(s)	78, 155, 218
MhlI	GDGCHC	1 cut(s)	176
MluCI	AATT	1 cut(s)	258
MnlI	CCTC	2 cut(s)	51, 142
Mph1103I	ATGCAT	1 cut(s)	214
MseI	TTAA	3 cut(s)	21, 132, 227
MwoI	GCNNNNNNNGC	1 cut(s)	191
NdeII	GATC	1 cut(s)	244
NlaIII	CATG	2 cut(s)	54, 157
NmeAIII	GCCGAG	1 cut(s)	122
NmuCI	GTSAC	1 cut(s)	219
NsbI	TGCGCA	1 cut(s)	186
NsiI	ATGCAT	1 cut(s)	214
NspI	RCATGY	1 cut(s)	54
PkrI	GCNGC	1 cut(s)	97
PpuMI	RGGWCCY	1 cut(s)	65
Psp5II	RGGWCCY	1 cut(s)	65
PspPI	GGNCC	1 cut(s)	65
PspPPI	RGGWCCY	1 cut(s)	65
PstNI	CAGNNNCTG	1 cut(s)	101
SaqAI	TTAA	3 cut(s)	21, 132, 227
SatI	GCNGC	1 cut(s)	96
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	1 cut(s)	65
SduI	GDGCHC	1 cut(s)	176
SetI	ASST	3 cut(s)	67, 100, 201
SfaNI	GCATC	2 cut(s)	117, 199
SinI	GGWCC	1 cut(s)	65
Sse9I	AATT	1 cut(s)	258
SspMI	CTAG	1 cut(s)	69
TaaI	ACNGT	2 cut(s)	103, 116
TaqI	TCGA	1 cut(s)	111
TasI	AATT	1 cut(s)	258
Tru1I	TTAA	3 cut(s)	21, 132, 227
Tru9I	TTAA	3 cut(s)	21, 132, 227
TscAI	CASTG	3 cut(s)	82, 96, 121
TseFI	GTSAC	1 cut(s)	219
TseI	GCWGC	1 cut(s)	95
Tsp45I	GTSAC	1 cut(s)	219
TspRI	CASTG	3 cut(s)	82, 96, 121
VpaK11BI	GGWCC	1 cut(s)	65
XapI	RAATTY	1 cut(s)	258
XceI	RCATGY	1 cut(s)	54
XspI	CTAG	1 cut(s)	69
Zsp2I	ATGCAT	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.