Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003337

Physical Location & Seq

Genomic Coordinates Reverse (-)

4231115 .. 4236500

Gene Structure 5386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031340

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1737 bp

ATGGCTCCGACGACGATGATCGTCACCAACACTCCGGCCGCCGACCTCGCTCTCACCAACCTCTCCTACTGCTCGCCGCTCGATCTCCAGACCTTCGCCATTCCCGGCACCAAGCTCAACCTATCTCTAATCGCCGACTCGGTCGTCCTCTCAGTCTGTCCTCACCAGAGCATACAGAAGGGTTACATTGCGCTGAATGCGATTCAACGACGGCAATCTAGGGTTTCTAGCGGTAACTCATTATCTGTGAGCAGGTTTACTCCGCCTGATGATTTCAACCTGACCGTGCTCACTCTGGAATTGGAGTTTGTGAAAGAAGGGACTAAGAGTGAACAGATTGATGCTGTTGCCTTGTCGAGCCAACTTAAAAAGAGGTTTATCAACCAGGTTATGACAGCCGGACAAAGAGTATCATTTCAGTACCTTGGGACTAATTACATTTTTACAGTCAATCAAGCTGTAAGATCCGAAGAGTCTAGCTCTGTTGAAAGAGGGATGATCTCGAGTGAAACATACTTCATTTTTGAGGCACCGAGTGGAAATGGAATAAAGATTGTGAACCAACGTTCTGCTACTACTAGCAATATCTTTAAGAACAAGGAATTCAACCTTCAATCACTTGGCATTGGTGGCCTAGGTGCTGAGTTTGCAGATATATTTCGAAGAGCTTTTGCCTCCCGTGTCTTCCCTGCACATGTTACAAATAAACTAGGGATTAAGCATGTGAAGGGTATGCTGCTTTATGGACCACCTGGTACTGGAAAAACTCTTATGGCACGTCAAATTGGAAAAATGTTGAATGGGAAAGATCCAAAGATTGTTAATGGTCCAGAAGTCCTGAGCAAGTTCGTTGGTGAAACTGAAAAAAATGTTAGGGATCTATTTGCTGATGCTGAGAATGATCAAAGGCTTCGTGCAAAAAAATCACATGTATTTATATATGTTGGATTTAATAGTTTTTGGTTAGACTCAAGAGGATCAACTAGAGATGGCACAGGAGTTCATGATAGTATTGTGAACCAGTTACTTACAAAGATTGATGCCCTTTTGAGGCCAGGACGTCTGGAAGTTCAAATTGAGATAAGTCTTCCTGATGAAAATGGTCGCATACAGATTCTTCAAATTCATACAAACAAAATGAAGGAAAGCTCTTTTCTTGCTCCTGATGTCAACCTGCAAGAGCTTGCTGCTCGTACAAAGAACTATAGTGGTGCAGAACTGGAAGGTGTTGTTAAAAGTGCAGTATCATTTGCTTTGAATAGACAACTAAGTTTGGATGATCTTACCAAGCCAGTGGATGGAGAGAGTATTAAGGTTACCATGGATGATTTTCTACGTGCACTCCATGAAATTGTACCTGCATTTGGTGCCTCCACTGATGACCTTGAAAGATGCAGACTTCATGGCATGGTGGATTGTGGGGATCGACATAAGCATATCTATCAAAGAGCCATGCTAATTGTGGAGCAAGTTAAATCAAGTGAGAGAAGCCCTCTTGTTACATGCCTTTTGGAAGGTCCTAGTGGCAGTGGTAAATCTTCACTGGCAGCTACTGTTGGCATCGACAGTGATTTCCCCTATGTTAAGATTATCTCGGCTGAGGCCATGATTGGTCTTCAAGAGAGCACTAAATGTGCGCAAATCGCAAAGGTTTTTGAAGATGCATACAAGTCACCATTAAGCATTATCATCCTGGACAATATTGAAAGGACAGATCAGTTGGTGAAAATTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 ko04727 ko04962 map04138 map04721 map04727 map04962

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N

Protein Analysis

579

Amino Acids

63.49

Weight (kDa)

8.07

Isoelectric Point (pI)

36.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDC48_2	PF02933	112 - 156	3.2e-06	Cell division protein 48 (CDC48), domain 2
AAA	PF00004	245 - 349	6.7e-15	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	389 - 424	3e-10	AAA+ lid domain
AAA	PF00004	503 - 570	8.5e-06	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04910
fragaria_vesca	FvH4_3g09180 FvH4_4g01371 FvH4_4g01380
malus_domestica	MD05G1312500.v1.1 MD05G1339600.v1.1 MD10G1294300.v1.1
prunus_persica	Prupe.4G047600_v2.0.a1
pyrus_communis	pycom05g29040 pycom10g24600
rosa_chinensis	RchiOBHm_Chr4g0419821 RchiOBHm_Chr5g0005931 RchiOBHm_Chr5g0005941 RchiOBHm_Chr5g0008441
rosa_laevigata	RLG00000031340 RLG00000031347 RLG00000031352 RLG00000031389 RLG00000031572
rosa_multiflora	Rmu_sc0000720.1_g000006 Rmu_sc0004326.1_g000001 Rmu_sc0006414.1_g000006
rosa_roxburghii	Rroxscaffold_1G00068050
rosa_rugosa	Rorug04G0435800
rosa_samantha	Rh4AG222000 Rh4BG224200 Rh4CG235100 Rh4DG221000 Rh5AG064700 Rh5BG061700 Rh5CG071500 Rh5CG071600 Rh5CG071800 Rh5CG071900
rosa_wichuraiana	Rw4G019100 Rw5G005630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	143
AatII	GACGTC	1 cut(s)	1063
Acc16I	TGCGCA	1 cut(s)	1638
Acc36I	ACCTGC	3 cut(s)	243, 1182, 1366
AccB1I	GGYRCC	3 cut(s)	107, 529, 1367
AccB7I	CCANNNNNTGG	1 cut(s)	1298
AccBSI	CCGCTC	1 cut(s)	79
AciI	CCGC	4 cut(s)	39, 77, 231, 263
AclI	AACGTT	1 cut(s)	565
AclWI	GGATC	5 cut(s)	459, 803, 885, 985, 1431
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	3 cut(s)	602, 1122, 1728
AcyI	GRCGYC	1 cut(s)	1060
AdeI	CACNNNGTG	1 cut(s)	536
AfaI	GTAC	4 cut(s)	422, 757, 1195, 1356
AfiI	CCNNNNNNNGG	4 cut(s)	758, 1050, 1298, 1364
AflIII	ACRYGT	2 cut(s)	694, 928
AjiI	CACGTC	1 cut(s)	779
AjnI	CCWGG	4 cut(s)	384, 751, 1054, 1692
AluBI	AGCT	7 cut(s)	115, 458, 480, 668, 1149, 1183, 1550
AluI	AGCT	7 cut(s)	115, 458, 480, 668, 1149, 1183, 1550
Alw21I	GWGCWC	3 cut(s)	291, 1342, 1628
Alw44I	GTGCAC	1 cut(s)	1338
AlwI	GGATC	5 cut(s)	459, 803, 885, 985, 1431
AlwNI	CAGNNNCTG	1 cut(s)	1553
Ama87I	CYCGRG	1 cut(s)	502
AoxI	GGCC	4 cut(s)	36, 631, 1052, 1602
ApaLI	GTGCAC	1 cut(s)	1338
ApeKI	GCWGC	3 cut(s)	736, 1187, 1547
ApoI	RAATTY	3 cut(s)	602, 1122, 1728
AspA2I	CCTAGG	1 cut(s)	634
AspLEI	GCGC	2 cut(s)	193, 1639
AspS9I	GGNCC	3 cut(s)	746, 827, 1517
AsuC2I	CCSGG	1 cut(s)	105
AsuHPI	GGTGA	6 cut(s)	16, 46, 155, 866, 1665, 1735
AsuII	TTCGAA	1 cut(s)	661
AvaI	CYCGRG	1 cut(s)	502
AvaII	GGWCC	3 cut(s)	746, 827, 1517
AvrII	CCTAGG	1 cut(s)	634
BaeGI	GKGCMC	1 cut(s)	1342
BanI	GGYRCC	3 cut(s)	107, 529, 1367
BbsI	GAAGAC	3 cut(s)	676, 1079, 1607
Bbv12I	GWGCWC	3 cut(s)	291, 1342, 1628
BbvCI	CCTCAGC	1 cut(s)	1599
BbvI	GCAGC	3 cut(s)	723, 1174, 1559
BccI	CCATC	2 cut(s)	983, 1292
BceAI	ACGGC	1 cut(s)	227
BciT130I	CCWGG	4 cut(s)	386, 753, 1056, 1694
BclI	TGATCA	1 cut(s)	901
BcnI	CCSGG	1 cut(s)	105
BfaI	CTAG	8 cut(s)	219, 228, 477, 579, 635, 710, 984, 1521
BfmI	CTRYAG	1 cut(s)	1204
BfuAI	ACCTGC	3 cut(s)	243, 1182, 1366
BisI	GCNGC	5 cut(s)	39, 77, 737, 1188, 1548
BlnI	CCTAGG	1 cut(s)	634
BlsI	GCNGC	5 cut(s)	40, 78, 738, 1189, 1549
Bme1390I	CCNGG	5 cut(s)	105, 386, 753, 1056, 1694
Bme18I	GGWCC	3 cut(s)	746, 827, 1517
BmeT110I	CYCGRG	1 cut(s)	502
BmgBI	CACGTC	1 cut(s)	779
BmgT120I	GGNCC	3 cut(s)	746, 827, 1517
BmiI	GGNNCC	4 cut(s)	6, 109, 531, 1369
BmrFI	CCNGG	5 cut(s)	105, 386, 753, 1056, 1694
BmsI	GCATC	6 cut(s)	331, 880, 1030, 1382, 1569, 1651
BpiI	GAAGAC	3 cut(s)	676, 1079, 1607
BplI	GAGNNNNNCTC	4 cut(s)	464, 496, 1477, 1509
BpmI	CTGGAG	1 cut(s)	71
Bpu10I	CCTNAGC	2 cut(s)	839, 1599
Bpu14I	TTCGAA	1 cut(s)	661
BpuEI	CTTGAG	1 cut(s)	955
BpuMI	CCSGG	1 cut(s)	105
BsaAI	YACGTR	1 cut(s)	1337
BsaHI	GRCGYC	1 cut(s)	1060
BsaJI	CCNNGG	3 cut(s)	424, 634, 1320
BsaXI	ACNNNNNCTCC	4 cut(s)	16, 46, 1326, 1356
Bsc4I	CCNNNNNNNGG	4 cut(s)	758, 1050, 1298, 1364
Bse1I	ACTGG	5 cut(s)	763, 1021, 1224, 1292, 1548
Bse3DI	GCAATG	1 cut(s)	186
BseBI	CCWGG	4 cut(s)	386, 753, 1056, 1694
BseDI	CCNNGG	3 cut(s)	424, 634, 1320
BseGI	GGATG	5 cut(s)	501, 1282, 1303, 1330, 1689
BseLI	CCNNNNNNNGG	4 cut(s)	758, 1050, 1298, 1364
BseMI	GCAATG	1 cut(s)	186
BseMII	CTCAG	5 cut(s)	165, 633, 830, 885, 1590
BseNI	ACTGG	5 cut(s)	763, 1021, 1224, 1292, 1548
BseSI	GKGCMC	1 cut(s)	1342
BseX3I	CGGCCG	1 cut(s)	36
BseXI	GCAGC	3 cut(s)	723, 1174, 1559
BsgI	GTGCAG	3 cut(s)	675, 1233, 1260
Bsh1285I	CGRYCG	2 cut(s)	39, 144
BshFI	GGCC	4 cut(s)	38, 633, 1054, 1604
BshNI	GGYRCC	3 cut(s)	107, 529, 1367
BsiEI	CGRYCG	2 cut(s)	39, 144
BsiHKAI	GWGCWC	3 cut(s)	291, 1342, 1628
BsiHKCI	CYCGRG	1 cut(s)	502
BsiSI	CCGG	3 cut(s)	35, 105, 399
BslFI	GGGAC	2 cut(s)	334, 442
BslI	CCNNNNNNNGG	4 cut(s)	758, 1050, 1298, 1364
BsmFI	GGGAC	2 cut(s)	334, 442
BsmI	GAATGC	1 cut(s)	202
BsnI	GGCC	4 cut(s)	38, 633, 1054, 1604
BsoBI	CYCGRG	1 cut(s)	502
Bsp119I	TTCGAA	1 cut(s)	661
Bsp1286I	GDGCHC	3 cut(s)	291, 1342, 1628
Bsp19I	CCATGG	1 cut(s)	1320
BspACI	CCGC	4 cut(s)	39, 77, 231, 263
BspANI	GGCC	4 cut(s)	38, 633, 1054, 1604
BspCNI	CTCAG	5 cut(s)	164, 634, 831, 886, 1591
BspHI	TCATGA	1 cut(s)	1003
BspLI	GGNNCC	4 cut(s)	6, 109, 531, 1369
BspMI	ACCTGC	3 cut(s)	243, 1182, 1366
BspPI	GGATC	5 cut(s)	459, 803, 885, 985, 1431
BspQI	GCTCTTC	1 cut(s)	658
BspT104I	TTCGAA	1 cut(s)	661
BspT107I	GGYRCC	3 cut(s)	107, 529, 1367
BsrBI	CCGCTC	1 cut(s)	79
BsrDI	GCAATG	1 cut(s)	186
BsrI	ACTGG	5 cut(s)	763, 1021, 1224, 1292, 1548
BssECI	CCNNGG	3 cut(s)	424, 634, 1320
BssNI	GRCGYC	1 cut(s)	1060
BssT1I	CCWWGG	3 cut(s)	424, 634, 1320
Bst2UI	CCWGG	4 cut(s)	386, 753, 1056, 1694
Bst4CI	ACNGT	4 cut(s)	286, 448, 1555, 1568
Bst6I	CTCTTC	2 cut(s)	465, 658
BstACI	GRCGYC	1 cut(s)	1060
BstAPI	GCANNNNNTGC	1 cut(s)	1367
BstBAI	YACGTR	1 cut(s)	1337
BstBI	TTCGAA	1 cut(s)	661
BstC8I	GCNNGC	2 cut(s)	74, 1185
BstDEI	CTNAG	7 cut(s)	151, 324, 642, 839, 894, 1268, 1599
BstDSI	CCRYGG	1 cut(s)	1320
BstEII	GGTNACC	1 cut(s)	1315
BstF5I	GGATG	5 cut(s)	501, 1282, 1303, 1330, 1689
BstHHI	GCGC	2 cut(s)	193, 1639
BstMCI	CGRYCG	2 cut(s)	39, 144
BstMWI	GCNNNNNNNGC	6 cut(s)	47, 197, 630, 647, 1367, 1643
BstNI	CCWGG	4 cut(s)	386, 753, 1056, 1694
BstNSI	RCATGY	4 cut(s)	698, 725, 932, 1506
BstPI	GGTNACC	1 cut(s)	1315
BstSCI	CCNGG	5 cut(s)	103, 384, 751, 1054, 1692
BstSFI	CTRYAG	1 cut(s)	1204
BstSLI	GKGCMC	1 cut(s)	1342
BstV1I	GCAGC	3 cut(s)	723, 1174, 1559
BstV2I	GAAGAC	3 cut(s)	676, 1079, 1607
BstX2I	RGATCY	3 cut(s)	464, 808, 877
BstXI	CCANNNNNNTGG	1 cut(s)	1294
BstYI	RGATCY	3 cut(s)	464, 808, 877
BstZI	CGGCCG	1 cut(s)	36
BsuRI	GGCC	4 cut(s)	38, 633, 1054, 1604
BtgI	CCRYGG	1 cut(s)	1320
BtrI	CACGTC	1 cut(s)	779
BtsCI	GGATG	5 cut(s)	501, 1282, 1303, 1330, 1689
BtsI	GCAGTG	1 cut(s)	1534
BtsIMutI	CAGTG	6 cut(s)	1299, 1374, 1534, 1541, 1573, 1732
BveI	ACCTGC	3 cut(s)	243, 1182, 1366
Cac8I	GCNNGC	2 cut(s)	74, 1185
CaiI	CAGNNNCTG	1 cut(s)	1553
CciI	TCATGA	1 cut(s)	1003
CfoI	GCGC	2 cut(s)	193, 1639
Cfr13I	GGNCC	3 cut(s)	746, 827, 1517
CsiI	ACCWGGT	2 cut(s)	384, 751
Csp6I	GTAC	4 cut(s)	421, 756, 1194, 1355
CviQI	GTAC	4 cut(s)	421, 756, 1194, 1355
DdeI	CTNAG	7 cut(s)	151, 324, 642, 839, 894, 1268, 1599
DraIII	CACNNNGTG	1 cut(s)	536
DrdI	GACNNNNNNGTC	1 cut(s)	143
DseDI	GACNNNNNNGTC	1 cut(s)	143
EaeI	YGGCCR	1 cut(s)	36
EagI	CGGCCG	1 cut(s)	36
Eam1104I	CTCTTC	2 cut(s)	465, 658
EarI	CTCTTC	2 cut(s)	465, 658
EciI	GGCGGA	1 cut(s)	252
EclXI	CGGCCG	1 cut(s)	36
Eco130I	CCWWGG	3 cut(s)	424, 634, 1320
Eco47I	GGWCC	3 cut(s)	746, 827, 1517
Eco52I	CGGCCG	1 cut(s)	36
Eco88I	CYCGRG	1 cut(s)	502
Eco91I	GGTNACC	1 cut(s)	1315
EcoO109I	RGGNCCY	1 cut(s)	1517
EcoO65I	GGTNACC	1 cut(s)	1315
EcoRI	GAATTC	1 cut(s)	602
EcoRII	CCWGG	4 cut(s)	384, 751, 1054, 1692
EcoT14I	CCWWGG	3 cut(s)	424, 634, 1320
EcoT22I	ATGCAT	1 cut(s)	1666
ErhI	CCWWGG	3 cut(s)	424, 634, 1320
FaqI	GGGAC	2 cut(s)	334, 442
FbaI	TGATCA	1 cut(s)	901
Fnu4HI	GCNGC	5 cut(s)	39, 77, 737, 1188, 1548
FokI	GGATG	5 cut(s)	508, 1289, 1310, 1337, 1676
Fsp4HI	GCNGC	5 cut(s)	39, 77, 737, 1188, 1548
FspBI	CTAG	8 cut(s)	219, 228, 477, 579, 635, 710, 984, 1521
FspI	TGCGCA	1 cut(s)	1638
GlaI	GCGC	2 cut(s)	192, 1638
GluI	GCNGC	5 cut(s)	39, 77, 737, 1188, 1548
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	4 cut(s)	38, 633, 1054, 1604
HapII	CCGG	3 cut(s)	35, 105, 399
HhaI	GCGC	2 cut(s)	193, 1639
Hin1I	GRCGYC	1 cut(s)	1060
Hin6I	GCGC	2 cut(s)	191, 1637
HinP1I	GCGC	2 cut(s)	191, 1637
HincII	GTYRAC	1 cut(s)	1171
HindII	GTYRAC	1 cut(s)	1171
HinfI	GANTC	5 cut(s)	137, 202, 473, 968, 1114
HpaII	CCGG	3 cut(s)	35, 105, 399
HphI	GGTGA	6 cut(s)	16, 46, 155, 866, 1665, 1735
Hpy166II	GTNNAC	6 cut(s)	258, 332, 559, 1018, 1171, 1340
Hpy188I	TCNGA	2 cut(s)	9, 469
Hpy8I	GTNNAC	6 cut(s)	258, 332, 559, 1018, 1171, 1340
Hpy99I	CGWCG	3 cut(s)	13, 16, 213
HpyAV	CCTTC	8 cut(s)	103, 172, 311, 620, 721, 1135, 1217, 1508
HpyCH4III	ACNGT	4 cut(s)	286, 448, 1555, 1568
HpyCH4IV	ACGT	4 cut(s)	565, 778, 1060, 1336
HpyF10VI	GCNNNNNNNGC	6 cut(s)	47, 197, 630, 647, 1367, 1643
HpyF3I	CTNAG	7 cut(s)	151, 324, 642, 839, 894, 1268, 1599
HpySE526I	ACGT	4 cut(s)	565, 778, 1060, 1336
Hsp92I	GRCGYC	1 cut(s)	1060
HspAI	GCGC	2 cut(s)	191, 1637
Ksp22I	TGATCA	1 cut(s)	901
LguI	GCTCTTC	1 cut(s)	658
LmnI	GCTCC	3 cut(s)	10, 1165, 1465
Lsp1109I	GCAGC	3 cut(s)	723, 1174, 1559
LweI	GCATC	6 cut(s)	331, 880, 1030, 1382, 1569, 1651
MabI	ACCWGGT	2 cut(s)	384, 751
MaeI	CTAG	8 cut(s)	219, 228, 477, 579, 635, 710, 984, 1521
MaeII	ACGT	4 cut(s)	565, 778, 1060, 1336
MaeIII	GTNAC	8 cut(s)	22, 182, 233, 697, 1023, 1315, 1498, 1671
MbiI	CCGCTC	1 cut(s)	79
MboII	GAAGA	8 cut(s)	482, 675, 676, 1079, 1109, 1530, 1607, 1670
MflI	RGATCY	3 cut(s)	464, 808, 877
MhlI	GDGCHC	3 cut(s)	291, 1342, 1628
MluCI	AATT	9 cut(s)	299, 433, 602, 783, 1074, 1122, 1350, 1458, 1728
MlyI	GAGTC	3 cut(s)	131, 482, 962
MmeI	TCCRAC	2 cut(s)	32, 925
Mph1103I	ATGCAT	1 cut(s)	1666
MspI	CCGG	3 cut(s)	35, 105, 399
MspR9I	CCNGG	5 cut(s)	105, 386, 753, 1056, 1694
Mva1269I	GAATGC	1 cut(s)	202
MvaI	CCWGG	4 cut(s)	386, 753, 1056, 1694
MwoI	GCNNNNNNNGC	6 cut(s)	47, 197, 630, 647, 1367, 1643
NciI	CCSGG	1 cut(s)	105
NcoI	CCATGG	1 cut(s)	1320
NlaIV	GGNNCC	4 cut(s)	6, 109, 531, 1369
NmeAIII	GCCGAG	1 cut(s)	1574
NmuCI	GTSAC	2 cut(s)	22, 1671
NsbI	TGCGCA	1 cut(s)	1638
NsiI	ATGCAT	1 cut(s)	1666
NspI	RCATGY	4 cut(s)	698, 725, 932, 1506
NspV	TTCGAA	1 cut(s)	661
PaeR7I	CTCGAG	1 cut(s)	502
PagI	TCATGA	1 cut(s)	1003
PciI	ACATGT	2 cut(s)	694, 928
PciSI	GCTCTTC	1 cut(s)	658
PctI	GAATGC	1 cut(s)	202
PfeI	GAWTC	2 cut(s)	202, 1114
PflFI	GACNNNGTC	1 cut(s)	140
PflMI	CCANNNNNTGG	1 cut(s)	1298
PfoI	TCCNGGA	1 cut(s)	1692
PkrI	GCNGC	5 cut(s)	40, 78, 738, 1189, 1549
PleI	GAGTC	3 cut(s)	131, 481, 962
PpsI	GAGTC	3 cut(s)	131, 481, 962
Ppu21I	YACGTR	1 cut(s)	1337
PpuMI	RGGWCCY	1 cut(s)	1517
PscI	ACATGT	2 cut(s)	694, 928
Psp1406I	AACGTT	1 cut(s)	565
Psp5II	RGGWCCY	1 cut(s)	1517
Psp6I	CCWGG	4 cut(s)	384, 751, 1054, 1692
PspEI	GGTNACC	1 cut(s)	1315
PspGI	CCWGG	4 cut(s)	384, 751, 1054, 1692
PspN4I	GGNNCC	4 cut(s)	6, 109, 531, 1369
PspPI	GGNCC	3 cut(s)	746, 827, 1517
PspPPI	RGGWCCY	1 cut(s)	1517
PstNI	CAGNNNCTG	1 cut(s)	1553
PsuI	RGATCY	3 cut(s)	464, 808, 877
PsyI	GACNNNGTC	1 cut(s)	140
RsaI	GTAC	4 cut(s)	422, 757, 1195, 1356
RsaNI	GTAC	4 cut(s)	421, 756, 1194, 1355
SapI	GCTCTTC	1 cut(s)	658
SatI	GCNGC	5 cut(s)	39, 77, 737, 1188, 1548
Sau96I	GGNCC	3 cut(s)	746, 827, 1517
SchI	GAGTC	3 cut(s)	131, 482, 962
ScrFI	CCNGG	5 cut(s)	105, 386, 753, 1056, 1694
SduI	GDGCHC	3 cut(s)	291, 1342, 1628
SexAI	ACCWGGT	2 cut(s)	384, 751
SfaNI	GCATC	6 cut(s)	331, 880, 1030, 1382, 1569, 1651
SfcI	CTRYAG	1 cut(s)	1204
Sfr274I	CTCGAG	1 cut(s)	502
SfuI	TTCGAA	1 cut(s)	661
SinI	GGWCC	3 cut(s)	746, 827, 1517
SlaI	CTCGAG	1 cut(s)	502
SmlI	CTYRAG	2 cut(s)	502, 970
SmoI	CTYRAG	2 cut(s)	502, 970
Sse9I	AATT	9 cut(s)	299, 433, 602, 783, 1074, 1122, 1350, 1458, 1728
SsiI	CCGC	4 cut(s)	39, 77, 231, 263
SspI	AATATT	1 cut(s)	1702
SspMI	CTAG	8 cut(s)	219, 228, 477, 579, 635, 710, 984, 1521
StyD4I	CCNGG	5 cut(s)	103, 384, 751, 1054, 1692
StyI	CCWWGG	3 cut(s)	424, 634, 1320
TaaI	ACNGT	4 cut(s)	286, 448, 1555, 1568
TaiI	ACGT	4 cut(s)	568, 781, 1063, 1339
TaqI	TCGA	6 cut(s)	81, 356, 503, 661, 1426, 1563
TaqII	GACCGA	1 cut(s)	130
TasI	AATT	9 cut(s)	299, 433, 602, 783, 1074, 1122, 1350, 1458, 1728
TauI	GCSGC	2 cut(s)	41, 79
TfiI	GAWTC	2 cut(s)	202, 1114
TscAI	CASTG	5 cut(s)	1299, 1381, 1534, 1548, 1573
TseFI	GTSAC	2 cut(s)	22, 1671
TseI	GCWGC	3 cut(s)	736, 1187, 1547
Tsp45I	GTSAC	2 cut(s)	22, 1671
TspDTI	ATGAA	7 cut(s)	508, 992, 1110, 1115, 1154, 1362, 1391
TspRI	CASTG	5 cut(s)	1299, 1381, 1534, 1548, 1573
Tth111I	GACNNNGTC	1 cut(s)	140
Van91I	CCANNNNNTGG	1 cut(s)	1298
VneI	GTGCAC	1 cut(s)	1338
VpaK11BI	GGWCC	3 cut(s)	746, 827, 1517
XapI	RAATTY	3 cut(s)	602, 1122, 1728
XceI	RCATGY	4 cut(s)	698, 725, 932, 1506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1459
XhoI	CTCGAG	1 cut(s)	502
XmaJI	CCTAGG	1 cut(s)	634
XspI	CTAG	8 cut(s)	219, 228, 477, 579, 635, 710, 984, 1521
ZraI	GACGTC	1 cut(s)	1061
Zsp2I	ATGCAT	1 cut(s)	1666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.