Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003337

Physical Location & Seq

Genomic Coordinates Forward (+)

5376303 .. 5383050

Gene Structure 6748 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28942

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2184 bp

ATGGCTCCGACGACGATGATCGTCACCAACACTCCGGCCGCCGACCTCGCTCTCACCAACCTCGCCTACTGCTCGCCGCTCGATCTCCAGACCTTCGCCATTCCCGGCACCAAGCTCAACCTAGCTCTAATCGCCGACTCGTTCGTCCTCTCAAGCATACAGAAGGGTTACATTGCGCTGAATGCGATTCAACGACGGCATGCTAGGGTTTCTAGCGGTGACTCATTATCTGTGAGCAGGTTTACTCCGCCTGATGATTTCAACCTGACCGTGCTCACTCTGGAATTGGAGTTTGTGAAAAAAGGGACTAAGAGTGAACAGATTGATGCTGTTGCCTTGTCGAGCCAACTTAAAAAGAGGTTTATCAACCAGGTTATGACAGCCGGACAAAGAGTATCATTTGAGTACCTTGGGACTAATTACATTTTTACAGTCAATCAAGCTGTAAGATCCGAAGAGTCTAGCTCTGTTGAAAGAGGGATGATCTCAAGTGAAACATACTTCATTTTTGAGGCACCGAGTGGAAATGGAATAAAGATTGTGAACCAACGTTCTGCTACGACTAGCAATATCTTTAAGCACAAGGAATTCAACCTTCAATCACTTGGCATTGGTGGCCTAGGTGCTGAGTTTGCAGATATATTTCGAAGAGCTTTTGCCTCCCGTGTCTTCCCTGCACATGTTACAAATAAACTAGGGATTAAGCATGTGAAGGGTATGCTGCTTTATGGACCACCTGGTACTGGAAAAACTCTTATGGCGCGTCAAATTGGAAAAATGTTGAATGGGAAAGATCCAAAGATTGTTAATGGTCCAGAAGTCCTGAGCAAGTTCGTTGGTGAAACTGAAAAAAATGTTAGGGATCTATTTGCTGATGCTGAGAATGATCAAAGGCTTCGTGGAGATGAAAGTGAATTGCATGTCATAATCTTTGATGAAATCGATGCTATTTGTAAGTCAAGAGGATCAACTAGAGATGGCACAGGAGTTCATGATAGTATTGTGAACCAGTTACTTACAAAGATTGATGGTGTGGAATCTCTGAATAATGTTTTGCTTATTGGGATGACCAACAGAAAGGATTTGATTGATGAAGCCCTTTTGAGGCCAGGACGTCTGGAAGTTCAAATTGAGATAAGTCTTCCTGATGAAAATGGTCGCATGCAGATTCTTCAAATTCATACGAACAAAATGAAGGAAAGCTCTTTTCTTGCTCCTGATGTCAACCTGCAAGAGCTTGCTGCTCGTACAAAGAATTATAGTGGTGCAGAACTGGAAGGTGTTGTTAAAAGTGCAGTATCATTTGCTTTGAATAGACAACTAAGTTTGGATGATCTTACCAAGCCAGTGGATGAGGAGAGTATTAAGGTTACCATGGATGATTTTCTACGTGCACTCCATGAAATTGTACCTGCATTTGGTGCCTCCACTGATGACCTTGAAAGATGCAGACTTCATGGCATGGTGGATTGTGGGGATCGACATAAGCATATCTATCAAAGAGCCATGCTGCTTGTGGAACAAGTTAAATCAAGTGAGAGAAGTCCTCTTGTTACATGCCTTTTGGAAGGTCCTAGTGGCAGTGGTAAATCTTCACTAGCAGCTACTGTTGGCATCGACAGTGATTTCCCCTATGTTAAGATTATCTCGGCTGAGGCCATGATTGGTCTTCAAGAGAGCACCAAATGTGCGCAAATCGCAAAGGTTTTTGAAGATGCATACAAGTCACCATTAAGCATTATCATCCTGGACAATATTGAAAGGTTACTGGAGTATATTGCTATTGGTCCGAGGTTTTCAAATTTGATATCTCAAACACTGATGCTCCTTCTCAAGCGCACTCCTCCAAAGGGGAAAAAGCTTCTGGTTTTTGGTACAACAAGTGAATTGGGCTTCTTAGACTCGATTGGTTTTTGTGATACCTTCTCCGTCACTTACAATGTTCCCACATTACAGACACCGGCTGCAAAGAAGGTGCTAGAACAGTTAAATGTCTTTGCTGATGAAGACATAGATGCAGCTGCAGAGGCCCTGAATGATATTCCTATCAAGAAGCTCTATATGGTAATTGAGATGGCAGCCCAGGGTGAGCAAGGAGGGTCTGCCCAGGCAATCTTCTCTGGACAAGCGAAAATAAAGATCAATCACTTTTATGCGATCCTTCAGGATACTGTTGGATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 ko04727 ko04962 map04138 map04721 map04727 map04962

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N

Protein Analysis

727

Amino Acids

79.7

Weight (kDa)

5.87

Isoelectric Point (pI)

35.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDC48_2	PF02933	107 - 151	1.2e-06	Cell division protein 48 (CDC48), domain 2
AAA	PF00004	240 - 380	2.5e-36	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	407 - 442	3.3e-10	AAA+ lid domain
AAA	PF00004	521 - 634	2.9e-08	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04910
fragaria_vesca	FvH4_3g09180 FvH4_4g01371 FvH4_4g01380
malus_domestica	MD05G1312500.v1.1 MD05G1339600.v1.1 MD10G1294300.v1.1
prunus_persica	Prupe.4G047600_v2.0.a1
pyrus_communis	pycom05g29040 pycom10g24600
rosa_chinensis	RchiOBHm_Chr4g0419821 RchiOBHm_Chr5g0005931 RchiOBHm_Chr5g0005941 RchiOBHm_Chr5g0008441
rosa_laevigata	RLG00000031340 RLG00000031347 RLG00000031352 RLG00000031389 RLG00000031572
rosa_multiflora	Rmu_sc0000720.1_g000006 Rmu_sc0004326.1_g000001 Rmu_sc0006414.1_g000006
rosa_roxburghii	Rroxscaffold_1G00068050
rosa_rugosa	Rorug04G0435800
rosa_samantha	Rh4AG222000 Rh4BG224200 Rh4CG235100 Rh4DG221000 Rh5AG064700 Rh5BG061700 Rh5CG071500 Rh5CG071600 Rh5CG071800 Rh5CG071900
rosa_wichuraiana	Rw4G019100 Rw5G005630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	143
AatII	GACGTC	1 cut(s)	1117
Acc16I	TGCGCA	1 cut(s)	1692
Acc36I	ACCTGC	3 cut(s)	228, 1236, 1420
AccB1I	GGYRCC	3 cut(s)	107, 514, 1421
AccBSI	CCGCTC	1 cut(s)	79
AccII	CGCG	1 cut(s)	763
AciI	CCGC	4 cut(s)	39, 77, 216, 248
AclI	AACGTT	1 cut(s)	550
AclWI	GGATC	6 cut(s)	444, 788, 870, 973, 1485, 2152
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	3 cut(s)	587, 1176, 1801
AcuI	CTGAAG	1 cut(s)	2147
AcyI	GRCGYC	1 cut(s)	1114
AdeI	CACNNNGTG	1 cut(s)	521
AfaI	GTAC	5 cut(s)	407, 742, 1249, 1410, 1876
AfiI	CCNNNNNNNGG	4 cut(s)	743, 1104, 1418, 1850
AflIII	ACRYGT	1 cut(s)	679
AjnI	CCWGG	6 cut(s)	369, 736, 1108, 1746, 2082, 2106
Alw21I	GWGCWC	3 cut(s)	276, 1396, 1682
Alw44I	GTGCAC	1 cut(s)	1392
AlwI	GGATC	6 cut(s)	444, 788, 870, 973, 1485, 2152
AlwNI	CAGNNNCTG	1 cut(s)	1607
AoxI	GGCC	5 cut(s)	36, 616, 1106, 1656, 2028
ApaLI	GTGCAC	1 cut(s)	1392
ApeKI	GCWGC	8 cut(s)	721, 1241, 1510, 1601, 1964, 2018, 2021, 2078
ApoI	RAATTY	3 cut(s)	587, 1176, 1801
AspA2I	CCTAGG	1 cut(s)	619
AspLEI	GCGC	4 cut(s)	178, 763, 1693, 1839
AspS9I	GGNCC	5 cut(s)	731, 812, 1571, 1787, 2029
AsuC2I	CCSGG	1 cut(s)	105
AsuHPI	GGTGA	6 cut(s)	16, 46, 230, 851, 1719, 2099
AsuII	TTCGAA	1 cut(s)	646
AvaII	GGWCC	4 cut(s)	731, 812, 1571, 1787
AvrII	CCTAGG	1 cut(s)	619
BaeGI	GKGCMC	1 cut(s)	1396
BanI	GGYRCC	3 cut(s)	107, 514, 1421
BbsI	GAAGAC	4 cut(s)	661, 1133, 1661, 2013
Bbv12I	GWGCWC	3 cut(s)	276, 1396, 1682
BbvCI	CCTCAGC	1 cut(s)	1653
BbvI	GCAGC	8 cut(s)	708, 1228, 1497, 1613, 1951, 2008, 2030, 2090
BccI	CCATC	3 cut(s)	971, 1022, 2068
BceAI	ACGGC	1 cut(s)	212
BciT130I	CCWGG	6 cut(s)	371, 738, 1110, 1748, 2084, 2108
BciVI	GTATCC	1 cut(s)	2161
BclI	TGATCA	1 cut(s)	886
BcnI	CCSGG	1 cut(s)	105
BfmI	CTRYAG	1 cut(s)	2022
BfuAI	ACCTGC	3 cut(s)	228, 1236, 1420
BfuI	GTATCC	1 cut(s)	2161
BlnI	CCTAGG	1 cut(s)	619
Bme1390I	CCNGG	7 cut(s)	105, 371, 738, 1110, 1748, 2084, 2108
Bme18I	GGWCC	4 cut(s)	731, 812, 1571, 1787
BmgT120I	GGNCC	5 cut(s)	731, 812, 1571, 1787, 2029
BmiI	GGNNCC	4 cut(s)	6, 109, 516, 1423
BmrFI	CCNGG	7 cut(s)	105, 371, 738, 1110, 1748, 2084, 2108
BmsI	GCATC	8 cut(s)	316, 865, 934, 1436, 1623, 1705, 1812, 2005
BpiI	GAAGAC	4 cut(s)	661, 1133, 1661, 2013
BplI	GAGNNNNNCTC	4 cut(s)	449, 481, 1531, 1563
BpmI	CTGGAG	2 cut(s)	71, 1790
Bpu10I	CCTNAGC	2 cut(s)	824, 1653
Bpu14I	TTCGAA	1 cut(s)	646
BpuEI	CTTGAG	3 cut(s)	136, 472, 1817
BpuMI	CCSGG	1 cut(s)	105
Bsa29I	ATCGAT	1 cut(s)	942
BsaAI	YACGTR	1 cut(s)	1391
BsaHI	GRCGYC	1 cut(s)	1114
BsaJI	CCNNGG	7 cut(s)	409, 619, 1374, 1790, 2082, 2083, 2106
BsaXI	ACNNNNNCTCC	6 cut(s)	16, 46, 1380, 1410, 1809, 1839
Bsc4I	CCNNNNNNNGG	4 cut(s)	743, 1104, 1418, 1850
Bse118I	RCCGGY	1 cut(s)	1960
Bse1I	ACTGG	5 cut(s)	748, 1009, 1278, 1346, 1773
Bse3DI	GCAATG	1 cut(s)	171
BseBI	CCWGG	6 cut(s)	371, 738, 1110, 1748, 2084, 2108
BseCI	ATCGAT	1 cut(s)	942
BseDI	CCNNGG	7 cut(s)	409, 619, 1374, 1790, 2082, 2083, 2106
BseGI	GGATG	6 cut(s)	486, 1071, 1336, 1357, 1384, 1743
BseLI	CCNNNNNNNGG	4 cut(s)	743, 1104, 1418, 1850
BseMI	GCAATG	1 cut(s)	171
BseMII	CTCAG	4 cut(s)	618, 815, 870, 1644
BseNI	ACTGG	5 cut(s)	748, 1009, 1278, 1346, 1773
BseRI	GAGGAG	2 cut(s)	1370, 1833
BseSI	GKGCMC	1 cut(s)	1396
BseX3I	CGGCCG	1 cut(s)	36
BseXI	GCAGC	8 cut(s)	708, 1228, 1497, 1613, 1951, 2008, 2030, 2090
BsgI	GTGCAG	3 cut(s)	660, 1287, 1314
Bsh1236I	CGCG	1 cut(s)	763
Bsh1285I	CGRYCG	1 cut(s)	39
BshFI	GGCC	5 cut(s)	38, 618, 1108, 1658, 2030
BshNI	GGYRCC	3 cut(s)	107, 514, 1421
BshVI	ATCGAT	1 cut(s)	942
BsiEI	CGRYCG	1 cut(s)	39
BsiHKAI	GWGCWC	3 cut(s)	276, 1396, 1682
BsiSI	CCGG	4 cut(s)	35, 105, 384, 1961
BslFI	GGGAC	2 cut(s)	319, 427
BslI	CCNNNNNNNGG	4 cut(s)	743, 1104, 1418, 1850
BsmFI	GGGAC	2 cut(s)	319, 427
BsmI	GAATGC	1 cut(s)	187
BsnI	GGCC	5 cut(s)	38, 618, 1108, 1658, 2030
Bsp119I	TTCGAA	1 cut(s)	646
Bsp1286I	GDGCHC	3 cut(s)	276, 1396, 1682
Bsp19I	CCATGG	1 cut(s)	1374
BspACI	CCGC	4 cut(s)	39, 77, 216, 248
BspANI	GGCC	5 cut(s)	38, 618, 1108, 1658, 2030
BspCNI	CTCAG	4 cut(s)	619, 816, 871, 1645
BspDI	ATCGAT	1 cut(s)	942
BspFNI	CGCG	1 cut(s)	763
BspHI	TCATGA	1 cut(s)	991
BspLI	GGNNCC	4 cut(s)	6, 109, 516, 1423
BspMAI	CTGCAG	1 cut(s)	2026
BspMI	ACCTGC	3 cut(s)	228, 1236, 1420
BspPI	GGATC	6 cut(s)	444, 788, 870, 973, 1485, 2152
BspQI	GCTCTTC	1 cut(s)	643
BspT104I	TTCGAA	1 cut(s)	646
BspT107I	GGYRCC	3 cut(s)	107, 514, 1421
BsrBI	CCGCTC	1 cut(s)	79
BsrDI	GCAATG	1 cut(s)	171
BsrFI	RCCGGY	1 cut(s)	1960
BsrI	ACTGG	5 cut(s)	748, 1009, 1278, 1346, 1773
BssAI	RCCGGY	1 cut(s)	1960
BssECI	CCNNGG	7 cut(s)	409, 619, 1374, 1790, 2082, 2083, 2106
BssNI	GRCGYC	1 cut(s)	1114
BssT1I	CCWWGG	3 cut(s)	409, 619, 1374
Bst2UI	CCWGG	6 cut(s)	371, 738, 1110, 1748, 2084, 2108
Bst4CI	ACNGT	6 cut(s)	271, 433, 1609, 1622, 1986, 2173
Bst6I	CTCTTC	2 cut(s)	450, 643
BstACI	GRCGYC	1 cut(s)	1114
BstAPI	GCANNNNNTGC	1 cut(s)	1421
BstBAI	YACGTR	1 cut(s)	1391
BstBI	TTCGAA	1 cut(s)	646
BstC8I	GCNNGC	4 cut(s)	74, 201, 1163, 1239
BstDEI	CTNAG	7 cut(s)	309, 627, 824, 879, 1322, 1653, 1897
BstDSI	CCRYGG	1 cut(s)	1374
BstEII	GGTNACC	1 cut(s)	1369
BstF5I	GGATG	6 cut(s)	486, 1071, 1336, 1357, 1384, 1743
BstFNI	CGCG	1 cut(s)	763
BstHHI	GCGC	4 cut(s)	178, 763, 1693, 1839
BstMCI	CGRYCG	1 cut(s)	39
BstMWI	GCNNNNNNNGC	8 cut(s)	47, 131, 182, 615, 632, 1421, 1697, 2027
BstNI	CCWGG	6 cut(s)	371, 738, 1110, 1748, 2084, 2108
BstNSI	RCATGY	6 cut(s)	203, 683, 710, 923, 1165, 1560
BstPI	GGTNACC	1 cut(s)	1369
BstSCI	CCNGG	7 cut(s)	103, 369, 736, 1108, 1746, 2082, 2106
BstSFI	CTRYAG	1 cut(s)	2022
BstSLI	GKGCMC	1 cut(s)	1396
BstUI	CGCG	1 cut(s)	763
BstV1I	GCAGC	8 cut(s)	708, 1228, 1497, 1613, 1951, 2008, 2030, 2090
BstV2I	GAAGAC	4 cut(s)	661, 1133, 1661, 2013
BstX2I	RGATCY	3 cut(s)	449, 793, 862
BstXI	CCANNNNNNTGG	1 cut(s)	1348
BstYI	RGATCY	3 cut(s)	449, 793, 862
BstZI	CGGCCG	1 cut(s)	36
Bsu15I	ATCGAT	1 cut(s)	942
BsuI	GTATCC	1 cut(s)	2161
BsuRI	GGCC	5 cut(s)	38, 618, 1108, 1658, 2030
BsuTUI	ATCGAT	1 cut(s)	942
BtgI	CCRYGG	1 cut(s)	1374
BtsCI	GGATG	6 cut(s)	486, 1071, 1336, 1357, 1384, 1743
BtsI	GCAGTG	1 cut(s)	1588
BtsIMutI	CAGTG	5 cut(s)	1353, 1428, 1588, 1627, 1817
BveI	ACCTGC	3 cut(s)	228, 1236, 1420
Cac8I	GCNNGC	4 cut(s)	74, 201, 1163, 1239
CaiI	CAGNNNCTG	1 cut(s)	1607
CciI	TCATGA	1 cut(s)	991
CfoI	GCGC	4 cut(s)	178, 763, 1693, 1839
Cfr10I	RCCGGY	1 cut(s)	1960
Cfr13I	GGNCC	5 cut(s)	731, 812, 1571, 1787, 2029
ClaI	ATCGAT	1 cut(s)	942
CseI	GACGC	1 cut(s)	752
CsiI	ACCWGGT	2 cut(s)	369, 736
Csp6I	GTAC	5 cut(s)	406, 741, 1248, 1409, 1875
CviQI	GTAC	5 cut(s)	406, 741, 1248, 1409, 1875
DdeI	CTNAG	7 cut(s)	309, 627, 824, 879, 1322, 1653, 1897
DraIII	CACNNNGTG	1 cut(s)	521
DrdI	GACNNNNNNGTC	1 cut(s)	143
DseDI	GACNNNNNNGTC	1 cut(s)	143
EaeI	YGGCCR	1 cut(s)	36
EagI	CGGCCG	1 cut(s)	36
Eam1104I	CTCTTC	2 cut(s)	450, 643
EarI	CTCTTC	2 cut(s)	450, 643
EciI	GGCGGA	1 cut(s)	237
EclXI	CGGCCG	1 cut(s)	36
Eco130I	CCWWGG	3 cut(s)	409, 619, 1374
Eco32I	GATATC	1 cut(s)	1809
Eco47I	GGWCC	4 cut(s)	731, 812, 1571, 1787
Eco52I	CGGCCG	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	2147
Eco91I	GGTNACC	1 cut(s)	1369
EcoO109I	RGGNCCY	2 cut(s)	1571, 2029
EcoO65I	GGTNACC	1 cut(s)	1369
EcoRI	GAATTC	1 cut(s)	587
EcoRII	CCWGG	6 cut(s)	369, 736, 1108, 1746, 2082, 2106
EcoRV	GATATC	1 cut(s)	1809
EcoT14I	CCWWGG	3 cut(s)	409, 619, 1374
EcoT22I	ATGCAT	1 cut(s)	1720
ErhI	CCWWGG	3 cut(s)	409, 619, 1374
FaqI	GGGAC	2 cut(s)	319, 427
FbaI	TGATCA	1 cut(s)	886
FokI	GGATG	6 cut(s)	493, 1078, 1343, 1364, 1391, 1730
FspI	TGCGCA	1 cut(s)	1692
GlaI	GCGC	4 cut(s)	177, 762, 1692, 1838
GsuI	CTGGAG	2 cut(s)	71, 1790
HaeIII	GGCC	5 cut(s)	38, 618, 1108, 1658, 2030
HapII	CCGG	4 cut(s)	35, 105, 384, 1961
HgaI	GACGC	1 cut(s)	752
HhaI	GCGC	4 cut(s)	178, 763, 1693, 1839
Hin1I	GRCGYC	1 cut(s)	1114
Hin6I	GCGC	4 cut(s)	176, 761, 1691, 1837
HinP1I	GCGC	4 cut(s)	176, 761, 1691, 1837
HincII	GTYRAC	1 cut(s)	1225
HindII	GTYRAC	1 cut(s)	1225
HindIII	AAGCTT	1 cut(s)	1859
HinfI	GANTC	7 cut(s)	137, 187, 221, 458, 1037, 1168, 1901
HpaII	CCGG	4 cut(s)	35, 105, 384, 1961
HphI	GGTGA	6 cut(s)	16, 46, 230, 851, 1719, 2099
Hpy166II	GTNNAC	6 cut(s)	243, 317, 544, 1006, 1225, 1394
Hpy188I	TCNGA	4 cut(s)	9, 454, 1044, 1791
Hpy8I	GTNNAC	6 cut(s)	243, 317, 544, 1006, 1225, 1394
Hpy99I	CGWCG	3 cut(s)	13, 16, 198
HpyCH4III	ACNGT	6 cut(s)	271, 433, 1609, 1622, 1986, 2173
HpyCH4IV	ACGT	3 cut(s)	550, 1114, 1390
HpyF10VI	GCNNNNNNNGC	8 cut(s)	47, 131, 182, 615, 632, 1421, 1697, 2027
HpyF3I	CTNAG	7 cut(s)	309, 627, 824, 879, 1322, 1653, 1897
HpySE526I	ACGT	3 cut(s)	550, 1114, 1390
Hsp92I	GRCGYC	1 cut(s)	1114
HspAI	GCGC	4 cut(s)	176, 761, 1691, 1837
Ksp22I	TGATCA	1 cut(s)	886
LguI	GCTCTTC	1 cut(s)	643
LmnI	GCTCC	3 cut(s)	10, 1219, 1830
Lsp1109I	GCAGC	8 cut(s)	708, 1228, 1497, 1613, 1951, 2008, 2030, 2090
LweI	GCATC	8 cut(s)	316, 865, 934, 1436, 1623, 1705, 1812, 2005
MabI	ACCWGGT	2 cut(s)	369, 736
MaeII	ACGT	3 cut(s)	550, 1114, 1390
MbiI	CCGCTC	1 cut(s)	79
MflI	RGATCY	3 cut(s)	449, 793, 862
MhlI	GDGCHC	3 cut(s)	276, 1396, 1682
MlyI	GAGTC	4 cut(s)	131, 215, 467, 1895
MmeI	TCCRAC	2 cut(s)	32, 2155
Mph1103I	ATGCAT	1 cut(s)	1720
MslI	CAYNNNNRTG	1 cut(s)	2151
MspA1I	CMGCKG	1 cut(s)	2021
MspI	CCGG	4 cut(s)	35, 105, 384, 1961
MspR9I	CCNGG	7 cut(s)	105, 371, 738, 1110, 1748, 2084, 2108
Mva1269I	GAATGC	1 cut(s)	187
MvaI	CCWGG	6 cut(s)	371, 738, 1110, 1748, 2084, 2108
MvnI	CGCG	1 cut(s)	763
MwoI	GCNNNNNNNGC	8 cut(s)	47, 131, 182, 615, 632, 1421, 1697, 2027
NciI	CCSGG	1 cut(s)	105
NcoI	CCATGG	1 cut(s)	1374
NlaIV	GGNNCC	4 cut(s)	6, 109, 516, 1423
NmeAIII	GCCGAG	1 cut(s)	1628
NmuCI	GTSAC	4 cut(s)	22, 218, 1725, 1930
NsbI	TGCGCA	1 cut(s)	1692
NsiI	ATGCAT	1 cut(s)	1720
NspI	RCATGY	6 cut(s)	203, 683, 710, 923, 1165, 1560
NspV	TTCGAA	1 cut(s)	646
PaeI	GCATGC	2 cut(s)	203, 1165
PagI	TCATGA	1 cut(s)	991
PasI	CCCWGGG	1 cut(s)	2083
PciI	ACATGT	1 cut(s)	679
PciSI	GCTCTTC	1 cut(s)	643
PctI	GAATGC	1 cut(s)	187
PfeI	GAWTC	3 cut(s)	187, 1037, 1168
PfoI	TCCNGGA	1 cut(s)	1746
PleI	GAGTC	4 cut(s)	131, 215, 466, 1895
PpsI	GAGTC	4 cut(s)	131, 215, 466, 1895
Ppu21I	YACGTR	1 cut(s)	1391
PpuMI	RGGWCCY	1 cut(s)	1571
PscI	ACATGT	1 cut(s)	679
Psp1406I	AACGTT	1 cut(s)	550
Psp5II	RGGWCCY	1 cut(s)	1571
Psp6I	CCWGG	6 cut(s)	369, 736, 1108, 1746, 2082, 2106
PspEI	GGTNACC	1 cut(s)	1369
PspGI	CCWGG	6 cut(s)	369, 736, 1108, 1746, 2082, 2106
PspN4I	GGNNCC	4 cut(s)	6, 109, 516, 1423
PspPI	GGNCC	5 cut(s)	731, 812, 1571, 1787, 2029
PspPPI	RGGWCCY	1 cut(s)	1571
PstI	CTGCAG	1 cut(s)	2026
PstNI	CAGNNNCTG	1 cut(s)	1607
PsuI	RGATCY	3 cut(s)	449, 793, 862
PvuII	CAGCTG	1 cut(s)	2021
RsaI	GTAC	5 cut(s)	407, 742, 1249, 1410, 1876
RsaNI	GTAC	5 cut(s)	406, 741, 1248, 1409, 1875
RseI	CAYNNNNRTG	1 cut(s)	2151
SapI	GCTCTTC	1 cut(s)	643
Sau96I	GGNCC	5 cut(s)	731, 812, 1571, 1787, 2029
SchI	GAGTC	4 cut(s)	131, 215, 467, 1895
ScrFI	CCNGG	7 cut(s)	105, 371, 738, 1110, 1748, 2084, 2108
SduI	GDGCHC	3 cut(s)	276, 1396, 1682
SexAI	ACCWGGT	2 cut(s)	369, 736
SfaNI	GCATC	8 cut(s)	316, 865, 934, 1436, 1623, 1705, 1812, 2005
SfcI	CTRYAG	1 cut(s)	2022
SfuI	TTCGAA	1 cut(s)	646
SinI	GGWCC	4 cut(s)	731, 812, 1571, 1787
SmiMI	CAYNNNNRTG	1 cut(s)	2151
SmlI	CTYRAG	3 cut(s)	151, 487, 1832
SmoI	CTYRAG	3 cut(s)	151, 487, 1832
SphI	GCATGC	2 cut(s)	203, 1165
SsiI	CCGC	4 cut(s)	39, 77, 216, 248
SspI	AATATT	1 cut(s)	1756
StyD4I	CCNGG	7 cut(s)	103, 369, 736, 1108, 1746, 2082, 2106
StyI	CCWWGG	3 cut(s)	409, 619, 1374
TaaI	ACNGT	6 cut(s)	271, 433, 1609, 1622, 1986, 2173
TaiI	ACGT	3 cut(s)	553, 1117, 1393
TaqI	TCGA	7 cut(s)	81, 341, 646, 942, 1480, 1617, 1904
TauI	GCSGC	2 cut(s)	41, 79
TfiI	GAWTC	3 cut(s)	187, 1037, 1168
TscAI	CASTG	5 cut(s)	1353, 1435, 1588, 1627, 1824
TseFI	GTSAC	4 cut(s)	22, 218, 1725, 1930
TseI	GCWGC	8 cut(s)	721, 1241, 1510, 1601, 1964, 2018, 2021, 2078
Tsp45I	GTSAC	4 cut(s)	22, 218, 1725, 1930
TspGWI	ACGGA	1 cut(s)	1918
TspRI	CASTG	5 cut(s)	1353, 1435, 1588, 1627, 1824
VneI	GTGCAC	1 cut(s)	1392
VpaK11BI	GGWCC	4 cut(s)	731, 812, 1571, 1787
XapI	RAATTY	3 cut(s)	587, 1176, 1801
XceI	RCATGY	6 cut(s)	203, 683, 710, 923, 1165, 1560
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1513
XmaJI	CCTAGG	1 cut(s)	619
ZraI	GACGTC	1 cut(s)	1115
Zsp2I	ATGCAT	1 cut(s)	1720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.