Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003337

Physical Location & Seq

Genomic Coordinates Reverse (-)

4315138 .. 4320231

Gene Structure 5094 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031352

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1797 bp

ATGGCTCCGACGATGATGATCATCACCAACACTCCGGCCGCCGATCTCGCTCTCACCAACCTCGCCTACTGCTCGCCGCTCGATCTCCAGACCTTCGCCATTCCCGGCACCAAGCTCAACCTAGCTCTAATTGCCGACTCGTTCGTCCTCTCAAGCATACAGAAGGGTTACATTGCGCTGAATGCGATTCAACGACAGCATGCTAGGGTTTCTAGCGGTGACTCATTATCTGTGAGCAGGTTAGTCACTGATTCGATCAACTTTACTAGCTGTTTACTCCGCCTGATGATTTCCAACCTGACCGTGCTCACTCTGGAATTGGAGTTTGTGAAAAAAGGGACTAAGAGTGAACAGATTGATGCTGTTGACTTATCGAGCCAACTTAAAAAGAGGTTTATCAACCAGGGACAAAGAGTATCATTTGAGTACCTTGGGACTAATTACATTTTTACAGTCAATCAAGCTGTAAGATCCGAAGAGTCTAGCTCTGTTGAAAGAGGGATGATCTCGAGTGAAACATACTTCATTTTTGAGGCACCGAGTGGAAATGGAAGAAAGATTGTGAACCAACGTTCTGCTACGACTAGCAATATCTTTAAGCACAAGGAATTCAACCTTCAATCACTTGGCATTGGTGGCCTAGGTGCTGAGTTTGCAGATATATTTCGAAGAGCTTTTGCCTCCCGTGTCTTCCCTGCACATGTTACAAATAAACTAGGGATTAAGCATGTGAAGGCTGTGCTGCTTTATGGACCACCTGGTACTGGAAAAACTCTTATGGCGCGTCAAATTGGAAAAATGTTGAATGGGAAAGATCCAAAGATTGTTAATGGTCCAGAAGTCCTGAGCAAGTTCGTTGGTGAAACTGAAAAAAATGTTAGGGATCTATTTGCTGATGCTGAAAATGATCAAAGGCTTCGTGGAGCTGAAAGTGAATTGCATGTCATAATCTTTGATGAAATCGATGCTATTTGTAAGTCAAGAGGATCAACTAGAGATGGCACAAGAGTTCATGATAGTATTGTGAACCAGTTACTCACAAAGATTGATGGTGTGGAATCTCTGAATAATGTTTTGATTATTGGGATGACCAACAGAAAGGATTTGATTGATGAAGCCCTTTTGAGGCCAGGACGTCTGGAAGTTCAAATTGAGATAAGTCTTCCTGATGAAAATGGTCGCATACAGATTCTTCAAATTCATACGAACAAAATGAAGGATTTTCTTATTTATTTGATGTTTGCAGCTGCTCGTACAAAGAACTATAGTGGTGCAGAACTGGAAGGTGTTGTTAAAAGTGCAGTATCATTTGCTTTGAATAGACAACTAAGTTTGGATGATCTTACCAAGCCAGTGGATGAAGAGAGTATTAAGGTTACCATGGATGATTTTCTACGTGCACTCTGTGAAATTGTACCTGCATTTGGTGCCTCCACTGATGACCTTGAAAGATGCAGACTTCATGGCATGGTGCATTGTGGGGATCGACATAAGCATATCTATCAAAGAGCCATGCTACTTGTGGAGCAAGTTAAATCAAGTGAGAGAAGCCCTCTTGTTACATGCCTTTTGGAAGGTCCTAGTGGCAGTGGTAAATCTTCACTAGCAGCTACTGTTGGCATCGACAGTGATTTCCCCTATGTTAAGATTATCTCGGCTGAGGCCATGATTGGTCTTCAAGAGAGCACTAAATGTGCACAAATCGCAAAGGTTTTTGAAGATGCATACAAGTCACCATTAAGCATTATCATCCTGGACAATATTGAAAGGGCAGATCAGTTGGTGAAAATTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 ko04727 ko04962 map04138 map04721 map04727 map04962

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N

Protein Analysis

599

Amino Acids

65.9

Weight (kDa)

6.88

Isoelectric Point (pI)

34.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	247 - 387	1.9e-36	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	416 - 444	6.4e-06	AAA+ lid domain
AAA	PF00004	523 - 590	7.8e-06	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04910
fragaria_vesca	FvH4_3g09180 FvH4_4g01371 FvH4_4g01380
malus_domestica	MD05G1312500.v1.1 MD05G1339600.v1.1 MD10G1294300.v1.1
prunus_persica	Prupe.4G047600_v2.0.a1
pyrus_communis	pycom05g29040 pycom10g24600
rosa_chinensis	RchiOBHm_Chr4g0419821 RchiOBHm_Chr5g0005931 RchiOBHm_Chr5g0005941 RchiOBHm_Chr5g0008441
rosa_laevigata	RLG00000031340 RLG00000031347 RLG00000031352 RLG00000031389 RLG00000031572
rosa_multiflora	Rmu_sc0000720.1_g000006 Rmu_sc0004326.1_g000001 Rmu_sc0006414.1_g000006
rosa_roxburghii	Rroxscaffold_1G00068050
rosa_rugosa	Rorug04G0435800
rosa_samantha	Rh4AG222000 Rh4BG224200 Rh4CG235100 Rh4DG221000 Rh5AG064700 Rh5BG061700 Rh5CG071500 Rh5CG071600 Rh5CG071800 Rh5CG071900
rosa_wichuraiana	Rw4G019100 Rw5G005630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	143
AatII	GACGTC	1 cut(s)	1138
Acc36I	ACCTGC	2 cut(s)	228, 1426
AccB1I	GGYRCC	3 cut(s)	107, 535, 1427
AccBSI	CCGCTC	1 cut(s)	79
AccII	CGCG	1 cut(s)	784
AciI	CCGC	4 cut(s)	39, 77, 216, 280
AclI	AACGTT	1 cut(s)	571
AclWI	GGATC	5 cut(s)	465, 809, 891, 994, 1491
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	3 cut(s)	608, 1197, 1788
AcyI	GRCGYC	1 cut(s)	1135
AdeI	CACNNNGTG	2 cut(s)	542, 1406
AfaI	GTAC	4 cut(s)	428, 763, 1255, 1416
AfiI	CCNNNNNNNGG	3 cut(s)	764, 1125, 1424
AflIII	ACRYGT	1 cut(s)	700
AjnI	CCWGG	4 cut(s)	402, 757, 1129, 1752
AluBI	AGCT	9 cut(s)	115, 125, 270, 464, 486, 674, 926, 1247, 1610
AluI	AGCT	9 cut(s)	115, 125, 270, 464, 486, 674, 926, 1247, 1610
Alw21I	GWGCWC	4 cut(s)	309, 1402, 1688, 1699
Alw44I	GTGCAC	2 cut(s)	1398, 1695
AlwI	GGATC	5 cut(s)	465, 809, 891, 994, 1491
AlwNI	CAGNNNCTG	1 cut(s)	1613
Ama87I	CYCGRG	1 cut(s)	508
AoxI	GGCC	4 cut(s)	36, 637, 1127, 1662
ApaLI	GTGCAC	2 cut(s)	1398, 1695
ApeKI	GCWGC	4 cut(s)	742, 1244, 1247, 1607
ApoI	RAATTY	3 cut(s)	608, 1197, 1788
AspA2I	CCTAGG	1 cut(s)	640
AspLEI	GCGC	2 cut(s)	178, 784
AspS9I	GGNCC	3 cut(s)	752, 833, 1577
AsuC2I	CCSGG	1 cut(s)	105
AsuHPI	GGTGA	6 cut(s)	16, 46, 230, 872, 1725, 1795
AsuII	TTCGAA	1 cut(s)	667
AvaI	CYCGRG	1 cut(s)	508
AvaII	GGWCC	3 cut(s)	752, 833, 1577
AvrII	CCTAGG	1 cut(s)	640
BaeGI	GKGCMC	2 cut(s)	1402, 1699
BanI	GGYRCC	3 cut(s)	107, 535, 1427
BbsI	GAAGAC	3 cut(s)	682, 1154, 1667
Bbv12I	GWGCWC	4 cut(s)	309, 1402, 1688, 1699
BbvCI	CCTCAGC	1 cut(s)	1659
BbvI	GCAGC	4 cut(s)	729, 1234, 1256, 1619
BccI	CCATC	2 cut(s)	992, 1043
BciT130I	CCWGG	4 cut(s)	404, 759, 1131, 1754
BclI	TGATCA	2 cut(s)	18, 907
BcnI	CCSGG	1 cut(s)	105
BfmI	CTRYAG	1 cut(s)	1264
BfuAI	ACCTGC	2 cut(s)	228, 1426
BisI	GCNGC	6 cut(s)	39, 77, 743, 1245, 1248, 1608
BlnI	CCTAGG	1 cut(s)	640
BlsI	GCNGC	6 cut(s)	40, 78, 744, 1246, 1249, 1609
Bme1390I	CCNGG	5 cut(s)	105, 404, 759, 1131, 1754
Bme18I	GGWCC	3 cut(s)	752, 833, 1577
BmeT110I	CYCGRG	1 cut(s)	508
BmgT120I	GGNCC	3 cut(s)	752, 833, 1577
BmiI	GGNNCC	4 cut(s)	6, 109, 537, 1429
BmrFI	CCNGG	5 cut(s)	105, 404, 759, 1131, 1754
BmsI	GCATC	6 cut(s)	349, 886, 955, 1442, 1629, 1711
BpiI	GAAGAC	3 cut(s)	682, 1154, 1667
BplI	GAGNNNNNCTC	4 cut(s)	470, 502, 1537, 1569
BpmI	CTGGAG	1 cut(s)	71
Bpu10I	CCTNAGC	2 cut(s)	845, 1659
Bpu14I	TTCGAA	1 cut(s)	667
BpuEI	CTTGAG	1 cut(s)	136
BpuMI	CCSGG	1 cut(s)	105
Bsa29I	ATCGAT	1 cut(s)	963
BsaAI	YACGTR	1 cut(s)	1397
BsaBI	GATNNNNATC	2 cut(s)	17, 20
BsaHI	GRCGYC	1 cut(s)	1135
BsaJI	CCNNGG	4 cut(s)	403, 430, 640, 1380
BsaXI	ACNNNNNCTCC	2 cut(s)	16, 46
Bsc4I	CCNNNNNNNGG	3 cut(s)	764, 1125, 1424
Bse1I	ACTGG	4 cut(s)	769, 1030, 1284, 1352
Bse3DI	GCAATG	1 cut(s)	171
Bse8I	GATNNNNATC	2 cut(s)	17, 20
BseBI	CCWGG	4 cut(s)	404, 759, 1131, 1754
BseCI	ATCGAT	1 cut(s)	963
BseDI	CCNNGG	4 cut(s)	403, 430, 640, 1380
BseGI	GGATG	6 cut(s)	507, 1092, 1342, 1363, 1390, 1749
BseJI	GATNNNNATC	2 cut(s)	17, 20
BseLI	CCNNNNNNNGG	3 cut(s)	764, 1125, 1424
BseMI	GCAATG	1 cut(s)	171
BseMII	CTCAG	3 cut(s)	639, 836, 1650
BseNI	ACTGG	4 cut(s)	769, 1030, 1284, 1352
BseSI	GKGCMC	2 cut(s)	1402, 1699
BseX3I	CGGCCG	1 cut(s)	36
BseXI	GCAGC	4 cut(s)	729, 1234, 1256, 1619
BsgI	GTGCAG	3 cut(s)	681, 1293, 1320
Bsh1236I	CGCG	1 cut(s)	784
Bsh1285I	CGRYCG	1 cut(s)	39
BshFI	GGCC	4 cut(s)	38, 639, 1129, 1664
BshNI	GGYRCC	3 cut(s)	107, 535, 1427
BshVI	ATCGAT	1 cut(s)	963
BsiEI	CGRYCG	1 cut(s)	39
BsiHKAI	GWGCWC	4 cut(s)	309, 1402, 1688, 1699
BsiHKCI	CYCGRG	1 cut(s)	508
BsiSI	CCGG	2 cut(s)	35, 105
BslFI	GGGAC	3 cut(s)	352, 420, 448
BslI	CCNNNNNNNGG	3 cut(s)	764, 1125, 1424
BsmFI	GGGAC	3 cut(s)	352, 420, 448
BsmI	GAATGC	1 cut(s)	187
BsnI	GGCC	4 cut(s)	38, 639, 1129, 1664
BsoBI	CYCGRG	1 cut(s)	508
Bsp119I	TTCGAA	1 cut(s)	667
Bsp1286I	GDGCHC	4 cut(s)	309, 1402, 1688, 1699
Bsp19I	CCATGG	1 cut(s)	1380
BspACI	CCGC	4 cut(s)	39, 77, 216, 280
BspANI	GGCC	4 cut(s)	38, 639, 1129, 1664
BspCNI	CTCAG	3 cut(s)	640, 837, 1651
BspDI	ATCGAT	1 cut(s)	963
BspFNI	CGCG	1 cut(s)	784
BspHI	TCATGA	1 cut(s)	1012
BspLI	GGNNCC	4 cut(s)	6, 109, 537, 1429
BspMI	ACCTGC	2 cut(s)	228, 1426
BspPI	GGATC	5 cut(s)	465, 809, 891, 994, 1491
BspQI	GCTCTTC	1 cut(s)	664
BspT104I	TTCGAA	1 cut(s)	667
BspT107I	GGYRCC	3 cut(s)	107, 535, 1427
BsrBI	CCGCTC	1 cut(s)	79
BsrDI	GCAATG	1 cut(s)	171
BsrI	ACTGG	4 cut(s)	769, 1030, 1284, 1352
BssECI	CCNNGG	4 cut(s)	403, 430, 640, 1380
BssNI	GRCGYC	1 cut(s)	1135
BssT1I	CCWWGG	3 cut(s)	430, 640, 1380
Bst2UI	CCWGG	4 cut(s)	404, 759, 1131, 1754
Bst4CI	ACNGT	4 cut(s)	304, 454, 1615, 1628
Bst6I	CTCTTC	3 cut(s)	471, 664, 1356
BstACI	GRCGYC	1 cut(s)	1135
BstAPI	GCANNNNNTGC	1 cut(s)	1427
BstBAI	YACGTR	1 cut(s)	1397
BstBI	TTCGAA	1 cut(s)	667
BstC8I	GCNNGC	2 cut(s)	74, 201
BstDEI	CTNAG	5 cut(s)	342, 648, 845, 1328, 1659
BstDSI	CCRYGG	1 cut(s)	1380
BstEII	GGTNACC	1 cut(s)	1375
BstF5I	GGATG	6 cut(s)	507, 1092, 1342, 1363, 1390, 1749
BstFNI	CGCG	1 cut(s)	784
BstHHI	GCGC	2 cut(s)	178, 784
BstMCI	CGRYCG	1 cut(s)	39
BstMWI	GCNNNNNNNGC	7 cut(s)	47, 131, 182, 636, 653, 1427, 1703
BstNI	CCWGG	4 cut(s)	404, 759, 1131, 1754
BstNSI	RCATGY	5 cut(s)	203, 704, 731, 944, 1566
BstPI	GGTNACC	1 cut(s)	1375
BstSCI	CCNGG	5 cut(s)	103, 402, 757, 1129, 1752
BstSFI	CTRYAG	1 cut(s)	1264
BstSLI	GKGCMC	2 cut(s)	1402, 1699
BstUI	CGCG	1 cut(s)	784
BstV1I	GCAGC	4 cut(s)	729, 1234, 1256, 1619
BstV2I	GAAGAC	3 cut(s)	682, 1154, 1667
BstX2I	RGATCY	3 cut(s)	470, 814, 883
BstXI	CCANNNNNNTGG	1 cut(s)	1354
BstYI	RGATCY	3 cut(s)	470, 814, 883
BstZI	CGGCCG	1 cut(s)	36
Bsu15I	ATCGAT	1 cut(s)	963
BsuRI	GGCC	4 cut(s)	38, 639, 1129, 1664
BsuTUI	ATCGAT	1 cut(s)	963
BtgI	CCRYGG	1 cut(s)	1380
BtsCI	GGATG	6 cut(s)	507, 1092, 1342, 1363, 1390, 1749
BtsI	GCAGTG	1 cut(s)	1594
BtsIMutI	CAGTG	6 cut(s)	246, 1359, 1434, 1594, 1633, 1792
BveI	ACCTGC	2 cut(s)	228, 1426
Cac8I	GCNNGC	2 cut(s)	74, 201
CaiI	CAGNNNCTG	1 cut(s)	1613
CciI	TCATGA	1 cut(s)	1012
CfoI	GCGC	2 cut(s)	178, 784
Cfr13I	GGNCC	3 cut(s)	752, 833, 1577
ClaI	ATCGAT	1 cut(s)	963
CseI	GACGC	1 cut(s)	773
CsiI	ACCWGGT	1 cut(s)	757
Csp6I	GTAC	4 cut(s)	427, 762, 1254, 1415
CviQI	GTAC	4 cut(s)	427, 762, 1254, 1415
DdeI	CTNAG	5 cut(s)	342, 648, 845, 1328, 1659
DraIII	CACNNNGTG	2 cut(s)	542, 1406
DrdI	GACNNNNNNGTC	1 cut(s)	143
DseDI	GACNNNNNNGTC	1 cut(s)	143
EaeI	YGGCCR	1 cut(s)	36
EagI	CGGCCG	1 cut(s)	36
Eam1104I	CTCTTC	3 cut(s)	471, 664, 1356
EarI	CTCTTC	3 cut(s)	471, 664, 1356
EciI	GGCGGA	1 cut(s)	269
EclXI	CGGCCG	1 cut(s)	36
Eco130I	CCWWGG	3 cut(s)	430, 640, 1380
Eco47I	GGWCC	3 cut(s)	752, 833, 1577
Eco52I	CGGCCG	1 cut(s)	36
Eco88I	CYCGRG	1 cut(s)	508
Eco91I	GGTNACC	1 cut(s)	1375
EcoO109I	RGGNCCY	1 cut(s)	1577
EcoO65I	GGTNACC	1 cut(s)	1375
EcoRI	GAATTC	1 cut(s)	608
EcoRII	CCWGG	4 cut(s)	402, 757, 1129, 1752
EcoT14I	CCWWGG	3 cut(s)	430, 640, 1380
EcoT22I	ATGCAT	1 cut(s)	1726
ErhI	CCWWGG	3 cut(s)	430, 640, 1380
FaqI	GGGAC	3 cut(s)	352, 420, 448
FbaI	TGATCA	2 cut(s)	18, 907
Fnu4HI	GCNGC	6 cut(s)	39, 77, 743, 1245, 1248, 1608
FokI	GGATG	6 cut(s)	514, 1099, 1349, 1370, 1397, 1736
Fsp4HI	GCNGC	6 cut(s)	39, 77, 743, 1245, 1248, 1608
GlaI	GCGC	2 cut(s)	177, 783
GluI	GCNGC	6 cut(s)	39, 77, 743, 1245, 1248, 1608
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	4 cut(s)	38, 639, 1129, 1664
HapII	CCGG	2 cut(s)	35, 105
HgaI	GACGC	1 cut(s)	773
HhaI	GCGC	2 cut(s)	178, 784
Hin1I	GRCGYC	1 cut(s)	1135
Hin6I	GCGC	2 cut(s)	176, 782
HinP1I	GCGC	2 cut(s)	176, 782
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HinfI	GANTC	7 cut(s)	137, 187, 221, 251, 479, 1058, 1189
HpaII	CCGG	2 cut(s)	35, 105
HphI	GGTGA	6 cut(s)	16, 46, 230, 872, 1725, 1795
Hpy166II	GTNNAC	7 cut(s)	275, 350, 367, 565, 1027, 1400, 1697
Hpy188I	TCNGA	3 cut(s)	9, 475, 1065
Hpy8I	GTNNAC	7 cut(s)	275, 350, 367, 565, 1027, 1400, 1697
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	7 cut(s)	103, 157, 626, 727, 1210, 1277, 1568
HpyCH4III	ACNGT	4 cut(s)	304, 454, 1615, 1628
HpyCH4IV	ACGT	3 cut(s)	571, 1135, 1396
HpyF10VI	GCNNNNNNNGC	7 cut(s)	47, 131, 182, 636, 653, 1427, 1703
HpyF3I	CTNAG	5 cut(s)	342, 648, 845, 1328, 1659
HpySE526I	ACGT	3 cut(s)	571, 1135, 1396
Hsp92I	GRCGYC	1 cut(s)	1135
HspAI	GCGC	2 cut(s)	176, 782
Ksp22I	TGATCA	2 cut(s)	18, 907
LguI	GCTCTTC	1 cut(s)	664
LmnI	GCTCC	3 cut(s)	10, 923, 1525
Lsp1109I	GCAGC	4 cut(s)	729, 1234, 1256, 1619
LweI	GCATC	6 cut(s)	349, 886, 955, 1442, 1629, 1711
MabI	ACCWGGT	1 cut(s)	757
MaeII	ACGT	3 cut(s)	571, 1135, 1396
MaeIII	GTNAC	8 cut(s)	167, 218, 244, 703, 1032, 1375, 1558, 1731
MbiI	CCGCTC	1 cut(s)	79
MflI	RGATCY	3 cut(s)	470, 814, 883
MhlI	GDGCHC	4 cut(s)	309, 1402, 1688, 1699
MlyI	GAGTC	3 cut(s)	131, 215, 488
MmeI	TCCRAC	2 cut(s)	32, 318
Mph1103I	ATGCAT	1 cut(s)	1726
MseI	TTAA	9 cut(s)	384, 597, 723, 828, 1293, 1371, 1533, 1644, 1739
MspA1I	CMGCKG	1 cut(s)	1247
MspI	CCGG	2 cut(s)	35, 105
MspR9I	CCNGG	5 cut(s)	105, 404, 759, 1131, 1754
Mva1269I	GAATGC	1 cut(s)	187
MvaI	CCWGG	4 cut(s)	404, 759, 1131, 1754
MvnI	CGCG	1 cut(s)	784
MwoI	GCNNNNNNNGC	7 cut(s)	47, 131, 182, 636, 653, 1427, 1703
NciI	CCSGG	1 cut(s)	105
NcoI	CCATGG	1 cut(s)	1380
NlaIV	GGNNCC	4 cut(s)	6, 109, 537, 1429
NmeAIII	GCCGAG	1 cut(s)	1634
NmuCI	GTSAC	3 cut(s)	218, 244, 1731
NsiI	ATGCAT	1 cut(s)	1726
NspI	RCATGY	5 cut(s)	203, 704, 731, 944, 1566
NspV	TTCGAA	1 cut(s)	667
PaeI	GCATGC	1 cut(s)	203
PaeR7I	CTCGAG	1 cut(s)	508
PagI	TCATGA	1 cut(s)	1012
PciI	ACATGT	1 cut(s)	700
PciSI	GCTCTTC	1 cut(s)	664
PctI	GAATGC	1 cut(s)	187
PfeI	GAWTC	4 cut(s)	187, 251, 1058, 1189
PfoI	TCCNGGA	1 cut(s)	1752
PkrI	GCNGC	6 cut(s)	40, 78, 744, 1246, 1249, 1609
PleI	GAGTC	3 cut(s)	131, 215, 487
PpsI	GAGTC	3 cut(s)	131, 215, 487
Ppu21I	YACGTR	1 cut(s)	1397
PpuMI	RGGWCCY	1 cut(s)	1577
PscI	ACATGT	1 cut(s)	700
Psp1406I	AACGTT	1 cut(s)	571
Psp5II	RGGWCCY	1 cut(s)	1577
Psp6I	CCWGG	4 cut(s)	402, 757, 1129, 1752
PspEI	GGTNACC	1 cut(s)	1375
PspGI	CCWGG	4 cut(s)	402, 757, 1129, 1752
PspN4I	GGNNCC	4 cut(s)	6, 109, 537, 1429
PspPI	GGNCC	3 cut(s)	752, 833, 1577
PspPPI	RGGWCCY	1 cut(s)	1577
PstNI	CAGNNNCTG	1 cut(s)	1613
PsuI	RGATCY	3 cut(s)	470, 814, 883
PvuII	CAGCTG	1 cut(s)	1247
RsaI	GTAC	4 cut(s)	428, 763, 1255, 1416
RsaNI	GTAC	4 cut(s)	427, 762, 1254, 1415
SapI	GCTCTTC	1 cut(s)	664
SaqAI	TTAA	9 cut(s)	384, 597, 723, 828, 1293, 1371, 1533, 1644, 1739
SatI	GCNGC	6 cut(s)	39, 77, 743, 1245, 1248, 1608
Sau96I	GGNCC	3 cut(s)	752, 833, 1577
SchI	GAGTC	3 cut(s)	131, 215, 488
ScrFI	CCNGG	5 cut(s)	105, 404, 759, 1131, 1754
SduI	GDGCHC	4 cut(s)	309, 1402, 1688, 1699
SexAI	ACCWGGT	1 cut(s)	757
SfaNI	GCATC	6 cut(s)	349, 886, 955, 1442, 1629, 1711
SfcI	CTRYAG	1 cut(s)	1264
Sfr274I	CTCGAG	1 cut(s)	508
SfuI	TTCGAA	1 cut(s)	667
SinI	GGWCC	3 cut(s)	752, 833, 1577
SlaI	CTCGAG	1 cut(s)	508
SmlI	CTYRAG	2 cut(s)	151, 508
SmoI	CTYRAG	2 cut(s)	151, 508
SphI	GCATGC	1 cut(s)	203
SsiI	CCGC	4 cut(s)	39, 77, 216, 280
SspI	AATATT	1 cut(s)	1762
StyD4I	CCNGG	5 cut(s)	103, 402, 757, 1129, 1752
StyI	CCWWGG	3 cut(s)	430, 640, 1380
TaaI	ACNGT	4 cut(s)	304, 454, 1615, 1628
TaiI	ACGT	3 cut(s)	574, 1138, 1399
TaqI	TCGA	8 cut(s)	81, 254, 374, 509, 667, 963, 1486, 1623
TauI	GCSGC	2 cut(s)	41, 79
TfiI	GAWTC	4 cut(s)	187, 251, 1058, 1189
Tru1I	TTAA	9 cut(s)	384, 597, 723, 828, 1293, 1371, 1533, 1644, 1739
Tru9I	TTAA	9 cut(s)	384, 597, 723, 828, 1293, 1371, 1533, 1644, 1739
TscAI	CASTG	5 cut(s)	253, 1359, 1441, 1594, 1633
TseFI	GTSAC	3 cut(s)	218, 244, 1731
TseI	GCWGC	4 cut(s)	742, 1244, 1247, 1607
Tsp45I	GTSAC	3 cut(s)	218, 244, 1731
TspDTI	ATGAA	9 cut(s)	514, 972, 1001, 1128, 1185, 1190, 1229, 1374, 1451
TspRI	CASTG	5 cut(s)	253, 1359, 1441, 1594, 1633
VneI	GTGCAC	2 cut(s)	1398, 1695
VpaK11BI	GGWCC	3 cut(s)	752, 833, 1577
XapI	RAATTY	3 cut(s)	608, 1197, 1788
XceI	RCATGY	5 cut(s)	203, 704, 731, 944, 1566
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1519
XhoI	CTCGAG	1 cut(s)	508
XmaJI	CCTAGG	1 cut(s)	640
ZraI	GACGTC	1 cut(s)	1136
Zsp2I	ATGCAT	1 cut(s)	1726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.