Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003337

Physical Location & Seq

Genomic Coordinates Reverse (-)

4274188 .. 4282565

Gene Structure 8378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031347

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2997 bp

ATGGCTCCGACGATGATGATCATCACCAACACTCCGGCCGCCGATCTCGCTCTCACCAACCTCGCCTACTGCTCGCCGCTCGATCTCCAGACCTTCGCCATTCCCGGCACCAAGCTCAACCTAGCTCTAATTGCCGACTCGTTCGTCCTCTCAAGCATACAGAAGGGTTACATTGCGCTGAATGCGATTCAACGACAGCATGCTAGGGTTTCTAGCGGTGACTCATTATCTGTGAGCAGGTTAGTCACTGATTCGATCAACTTTACTAGCTGTTTACTCCGCCTGATGATTTCCAACCTGACCGTGCTCACTCTGGAATTGGAGTTTGTGAAAAAAGGGACTAAGAGTGAACAGATTGATGCTGTTGACTTATCGAGCCAACTTAAAAAGAGGTTTATCAACCAGGGACAAAGAGTATCATTTGAGTACCTTGGGACTAATTACATTTTTACAGTCAATCAAGCTGTAAGATCCGAAGAGTCTAGCTCTGTTGAAAGAGGGATGATCTCGAGTGAAACATACTTCATTTTTGAGGCACCGAGTGGAAATGGAAGAAAGATTGTGAACCAACGTTCTGCTACGACTAGCAATATCTTTAAGCACAAGGAATTCAACCTTCAATCACTTGGCATTGGTGGCCTAGGTGCTGAGTTTGCAGATATATTTCGAAGAGCTTTTGCCTCCCGTGTCTTCCCTGCACATGTTACAAATAAACTAGGGATTAAGCATGTGAAGGCTGTGCTGCTTTATGGACCACCTGGTACTGGAAAAACTCTTATGGCGCGTCAAATTGGAAAAATGTTGAATGGGAAAGATCCAAAGATTGTTAATGGTCCAGAAGTCCTGAGCAAGTTCGTTGGTGAAACTGAAAAAAATGTTAGGGATCTATTTGCTGATGCTGAAAATGATCAAAGGCTTCGTGGAGCTGAAAGTGAATTGCATGTCATAATCTTTGATGAAATCGATGCTATTTGTAAGTCAAGAGGATCAACTAGAGATGGCACAAGAGTTCATGATAGTATTGTGAACCAGTTACTCACAAAGATTGATGGTGTGGAATCTCTGAATAATGTTTTGATTATTGGGATGACCAACAGAAAGGATTTGATTGATGAAGCCCTTTTGAGGCCAGGACGTCTGGAAGTTCAAATTGAGATAAGTCTTCCTGATGAAAATGGTCGCATACAGATTCTTCAAATTCATACGAACAAAATGAAGGATTTTCTTATTTATTTGATGTTTGCAGCTGCTCGTACAAAGAACTATAGTGGTGCAGAACTGGAAGGTGTTGTTAAAAGTGCAGTATCATTTGCTTTGAATAGACAACTAAGTTTGGATGATCTTACCAAGCCAGTGGATGAAGAGAGTATTAAGGTTACCATGGATGATTTTCTACGTGCACTCTGTGAAATTGTACCTGCATTTGGTGCCTCCACTGATGACCTTGAAAGATGCAGACTTCATGGCATGGTGCATTGTGGGGATCGACATAAGCATATCTATCAAAGAGCCATGCTACTTGTGGAGCAAGTTAAATCAAGTGAGAGAAGCCCTCTTGTTACATGCCTTTTGGAAGGTCCTAGTGGCAGTGGTAAATCTTCACTAGCAGCTACTGTTGGCATCGACAGTGATTTCCCCTATGTTAAGATTATCTCGGCTGAGGCCATGATTGGTCTTCAAGAGAGCACTAAATGTGCACAAATCGCAAAGGTTTTTGAAGATGCATACAAGTCACCATTAAGCATTATCATCCTGGACAATATTGAAAGGGAAAAAGCATCTCAAATCAAGGAAGCTGTCACCACAACCACCAAACTCCTTGGGCGGGCAAGATATACCGTCAACAGCATTACAATCTTTCCAAGACCCAAGAACACTTTGAGAGAAATGTATTTATACCTCCCCGGAAAGTCCCCTGAAATTGATCTCGACAACAGCTCAAACAAAGAAATTTTTGAAAACTTTGAAGAGACACCAGTAGCATCTGGGAGTATTGCTCAAGTGCATCGGGCTACTTTGAAATTTCGATACCCTGGTCAACAGGTGAAGCCCATAGTAGTTGCAGTTAAGGTTAGACATCCTGGTGTTGGTGAATCAATTAGGAGAGATTTTGTAATAATCAATTTAGTAGCAAAAATGTCAAAGTTCATTCCTGCTTTAAAGTGGTGGAGATTGGATGAAAGTGTACAACAGTTTTCAGTTTTTATGATGTCTCAAGTTGACCTTGCAAGGGAAGCTGCCAATTTGAGCCGCTTTACTTATAATTTTCGTAGATGGAAGGACGTCTCTTTCCCAAAGCCTTTGTATCCACTTGTGCATCCTGCTGTTTTAGTGGAAACGTATGAGCAAGGGGAATGCGTCTCACATTATGTTGATGATCTTCAAGGGCACGAACGGATTAAATCAGCACTTGCTCACATTGGAACACATGCACTTCTGAAGATGCTCCTGGTGGACAACTTTATACATGCAGACATGCATCCTGGGAACATACTTGTTCGGGTGGCTCAGAACAAGCCTTCTCGGAAGCGACTGTTTAAATCAAAGCCTCATGTCATTTTCCTTGATGCAGGCATGACTGCTGAACTCTCTAGAAGTGACAGAGTGAATTTACTTGAATTTTTCAAGGCTGTTGCACGTTGTGATGGGCGCACTGCTGCTGAGTGCACACTAAGACTCTCTAAGCAACAGAATTGCCCAAATCCAAAGGCTTTCATTGAGGAAGTGGAGGAGTCATTCACTTTCTGGGGTACTCCAGAAGGTGATCTGGTTCATCCTGCTGATTGCATGCAGCAGTTACTGGAGAAAGTTAGGCGGCATAGAGTCAATGTTGATGGCAATGTTTGTACTGTCGTGGTGACAACATTGGTTCTTGAGGGATGGCAGAGGAAACTTGATCCAGCATACAATGTGATGCATACCTTGCAAACTCTGCTTCTCAAGGCTGACTGGGCAAAGTCCCTTTCATACACATTCGAGGGGCTAATGGCTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 ko04727 ko04962 map04138 map04721 map04727 map04962

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N

Protein Analysis

999

Amino Acids

111.48

Weight (kDa)

8.66

Isoelectric Point (pI)

39.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	247 - 387	4.3e-36	ATPase family associated with various cellular activities (AAA)
AAA	PF00004	523 - 594	9.7e-06	ATPase family associated with various cellular activities (AAA)
ABC1	PF03109	648 - 888	2.9e-43	ABC1 atypical kinase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04910
fragaria_vesca	FvH4_3g09180 FvH4_4g01371 FvH4_4g01380
malus_domestica	MD05G1312500.v1.1 MD05G1339600.v1.1 MD10G1294300.v1.1
prunus_persica	Prupe.4G047600_v2.0.a1
pyrus_communis	pycom05g29040 pycom10g24600
rosa_chinensis	RchiOBHm_Chr4g0419821 RchiOBHm_Chr5g0005931 RchiOBHm_Chr5g0005941 RchiOBHm_Chr5g0008441
rosa_laevigata	RLG00000031340 RLG00000031347 RLG00000031352 RLG00000031389 RLG00000031572
rosa_multiflora	Rmu_sc0000720.1_g000006 Rmu_sc0004326.1_g000001 Rmu_sc0006414.1_g000006
rosa_roxburghii	Rroxscaffold_1G00068050
rosa_rugosa	Rorug04G0435800
rosa_samantha	Rh4AG222000 Rh4BG224200 Rh4CG235100 Rh4DG221000 Rh5AG064700 Rh5BG061700 Rh5CG071500 Rh5CG071600 Rh5CG071800 Rh5CG071900
rosa_wichuraiana	Rw4G019100 Rw5G005630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2262
AasI	GACNNNNNNGTC	1 cut(s)	143
AatII	GACGTC	2 cut(s)	1138, 2286
Acc36I	ACCTGC	2 cut(s)	228, 1426
AccB1I	GGYRCC	3 cut(s)	107, 535, 1427
AccBSI	CCGCTC	1 cut(s)	79
AccII	CGCG	1 cut(s)	784
AciI	CCGC	7 cut(s)	39, 77, 216, 280, 1825, 2251, 2815
AclI	AACGTT	1 cut(s)	571
AclWI	GGATC	6 cut(s)	465, 809, 891, 994, 1491, 2891
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	6 cut(s)	608, 1197, 1950, 2021, 2608, 2618
AcuI	CTGAAG	1 cut(s)	2459
AcyI	GRCGYC	2 cut(s)	1135, 2283
AdeI	CACNNNGTG	3 cut(s)	542, 1406, 2642
AfaI	GTAC	7 cut(s)	428, 763, 1255, 1416, 2187, 2752, 2848
AfiI	CCNNNNNNNGG	6 cut(s)	764, 1125, 1424, 1825, 2087, 2230
AflIII	ACRYGT	1 cut(s)	700
AjnI	CCWGG	8 cut(s)	402, 757, 1129, 1752, 2032, 2080, 2448, 2482
Alw21I	GWGCWC	5 cut(s)	309, 1402, 1688, 1699, 2669
Alw26I	GTCTC	4 cut(s)	1964, 2217, 2290, 2365
Alw44I	GTGCAC	3 cut(s)	1398, 1695, 2665
AlwI	GGATC	6 cut(s)	465, 809, 891, 994, 1491, 2891
AlwNI	CAGNNNCTG	2 cut(s)	1613, 2800
Ama87I	CYCGRG	1 cut(s)	508
AoxI	GGCC	4 cut(s)	36, 637, 1127, 1662
ApaLI	GTGCAC	3 cut(s)	1398, 1695, 2665
ApeKI	GCWGC	7 cut(s)	742, 1244, 1247, 1607, 2237, 2657, 2791
ApoI	RAATTY	6 cut(s)	608, 1197, 1950, 2021, 2608, 2618
AspA2I	CCTAGG	1 cut(s)	640
AspLEI	GCGC	3 cut(s)	178, 784, 2652
AspS9I	GGNCC	3 cut(s)	752, 833, 1577
AsuC2I	CCSGG	2 cut(s)	105, 1905
AsuII	TTCGAA	1 cut(s)	667
AvaI	CYCGRG	1 cut(s)	508
AvaII	GGWCC	3 cut(s)	752, 833, 1577
AvrII	CCTAGG	1 cut(s)	640
BaeGI	GKGCMC	4 cut(s)	1402, 1699, 2391, 2669
BaeI	ACNNNNGTAYC	2 cut(s)	2020, 2053
BanI	GGYRCC	3 cut(s)	107, 535, 1427
BbsI	GAAGAC	3 cut(s)	682, 1154, 1667
Bbv12I	GWGCWC	5 cut(s)	309, 1402, 1688, 1699, 2669
BbvCI	CCTCAGC	1 cut(s)	1659
BbvI	GCAGC	7 cut(s)	729, 1234, 1256, 1619, 2224, 2644, 2803
BccI	CCATC	6 cut(s)	992, 1043, 2268, 2639, 2828, 2874
BciT130I	CCWGG	8 cut(s)	404, 759, 1131, 1754, 2034, 2082, 2450, 2484
BciVI	GTATCC	1 cut(s)	2316
BclI	TGATCA	2 cut(s)	18, 907
BcnI	CCSGG	2 cut(s)	105, 1905
BcoDI	GTCTC	4 cut(s)	1964, 2217, 2290, 2365
BfmI	CTRYAG	1 cut(s)	1264
BfuAI	ACCTGC	2 cut(s)	228, 1426
BfuI	GTATCC	1 cut(s)	2316
BlnI	CCTAGG	1 cut(s)	640
Bme18I	GGWCC	3 cut(s)	752, 833, 1577
BmeT110I	CYCGRG	1 cut(s)	508
BmgT120I	GGNCC	3 cut(s)	752, 833, 1577
BmiI	GGNNCC	5 cut(s)	6, 109, 537, 1429, 2991
BmrI	ACTGGG	1 cut(s)	2959
BmuI	ACTGGG	1 cut(s)	2959
BpiI	GAAGAC	3 cut(s)	682, 1154, 1667
BplI	GAGNNNNNCTC	6 cut(s)	470, 502, 1537, 1569, 1981, 2013
BpmI	CTGGAG	3 cut(s)	71, 2739, 2822
Bpu10I	CCTNAGC	2 cut(s)	845, 1659
Bpu14I	TTCGAA	1 cut(s)	667
BpuEI	CTTGAG	5 cut(s)	136, 1983, 2199, 2894, 2924
BpuMI	CCSGG	2 cut(s)	105, 1905
Bsa29I	ATCGAT	1 cut(s)	963
BsaAI	YACGTR	1 cut(s)	1397
BsaBI	GATNNNNATC	2 cut(s)	17, 20
BsaHI	GRCGYC	2 cut(s)	1135, 2283
BsaJI	CCNNGG	8 cut(s)	403, 430, 640, 1380, 1819, 1903, 2032, 2483
BsaXI	ACNNNNNCTCC	2 cut(s)	16, 46
Bsc4I	CCNNNNNNNGG	6 cut(s)	764, 1125, 1424, 1825, 2087, 2230
Bse1I	ACTGG	7 cut(s)	769, 1030, 1284, 1352, 1976, 2805, 2954
Bse3DI	GCAATG	2 cut(s)	171, 2845
Bse8I	GATNNNNATC	2 cut(s)	17, 20
BseBI	CCWGG	8 cut(s)	404, 759, 1131, 1754, 2034, 2082, 2450, 2484
BseCI	ATCGAT	1 cut(s)	963
BseDI	CCNNGG	8 cut(s)	403, 430, 640, 1380, 1819, 1903, 2032, 2483
BseJI	GATNNNNATC	2 cut(s)	17, 20
BseLI	CCNNNNNNNGG	6 cut(s)	764, 1125, 1424, 1825, 2087, 2230
BseMI	GCAATG	2 cut(s)	171, 2845
BseMII	CTCAG	5 cut(s)	639, 836, 1650, 2522, 2652
BseNI	ACTGG	7 cut(s)	769, 1030, 1284, 1352, 1976, 2805, 2954
BseRI	GAGGAG	1 cut(s)	2744
BseSI	GKGCMC	4 cut(s)	1402, 1699, 2391, 2669
BseX3I	CGGCCG	1 cut(s)	36
BseXI	GCAGC	7 cut(s)	729, 1234, 1256, 1619, 2224, 2644, 2803
BsgI	GTGCAG	3 cut(s)	681, 1293, 1320
Bsh1236I	CGCG	1 cut(s)	784
Bsh1285I	CGRYCG	1 cut(s)	39
BshFI	GGCC	4 cut(s)	38, 639, 1129, 1664
BshNI	GGYRCC	3 cut(s)	107, 535, 1427
BshVI	ATCGAT	1 cut(s)	963
BsiEI	CGRYCG	1 cut(s)	39
BsiHKAI	GWGCWC	5 cut(s)	309, 1402, 1688, 1699, 2669
BsiHKCI	CYCGRG	1 cut(s)	508
BsiSI	CCGG	3 cut(s)	35, 105, 1905
BslFI	GGGAC	5 cut(s)	352, 420, 448, 1897, 2944
BslI	CCNNNNNNNGG	6 cut(s)	764, 1125, 1424, 1825, 2087, 2230
BsmAI	GTCTC	4 cut(s)	1964, 2217, 2290, 2365
BsmBI	CGTCTC	2 cut(s)	2290, 2365
BsmFI	GGGAC	5 cut(s)	352, 420, 448, 1897, 2944
BsmI	GAATGC	2 cut(s)	187, 2360
BsnI	GGCC	4 cut(s)	38, 639, 1129, 1664
BsoBI	CYCGRG	1 cut(s)	508
Bsp119I	TTCGAA	1 cut(s)	667
Bsp1286I	GDGCHC	6 cut(s)	309, 1402, 1688, 1699, 2391, 2669
Bsp1407I	TGTACA	1 cut(s)	2185
Bsp19I	CCATGG	1 cut(s)	1380
BspACI	CCGC	7 cut(s)	39, 77, 216, 280, 1825, 2251, 2815
BspANI	GGCC	4 cut(s)	38, 639, 1129, 1664
BspCNI	CTCAG	5 cut(s)	640, 837, 1651, 2521, 2653
BspDI	ATCGAT	1 cut(s)	963
BspFNI	CGCG	1 cut(s)	784
BspHI	TCATGA	1 cut(s)	1012
BspLI	GGNNCC	5 cut(s)	6, 109, 537, 1429, 2991
BspMI	ACCTGC	2 cut(s)	228, 1426
BspPI	GGATC	6 cut(s)	465, 809, 891, 994, 1491, 2891
BspQI	GCTCTTC	1 cut(s)	664
BspT104I	TTCGAA	1 cut(s)	667
BspT107I	GGYRCC	3 cut(s)	107, 535, 1427
BsrBI	CCGCTC	1 cut(s)	79
BsrDI	GCAATG	2 cut(s)	171, 2845
BsrGI	TGTACA	1 cut(s)	2185
BsrI	ACTGG	7 cut(s)	769, 1030, 1284, 1352, 1976, 2805, 2954
BssECI	CCNNGG	8 cut(s)	403, 430, 640, 1380, 1819, 1903, 2032, 2483
BssNI	GRCGYC	2 cut(s)	1135, 2283
BssT1I	CCWWGG	4 cut(s)	430, 640, 1380, 1819
Bst2UI	CCWGG	8 cut(s)	404, 759, 1131, 1754, 2034, 2082, 2450, 2484
Bst4CI	ACNGT	8 cut(s)	304, 454, 1615, 1628, 1840, 2193, 2535, 2851
Bst6I	CTCTTC	4 cut(s)	471, 664, 1356, 1962
BstACI	GRCGYC	2 cut(s)	1135, 2283
BstAPI	GCANNNNNTGC	3 cut(s)	1427, 2923, 2932
BstAUI	TGTACA	1 cut(s)	2185
BstBAI	YACGTR	1 cut(s)	1397
BstBI	TTCGAA	1 cut(s)	667
BstC8I	GCNNGC	5 cut(s)	74, 201, 1827, 2572, 2789
BstDEI	CTNAG	9 cut(s)	342, 648, 845, 1328, 1659, 2508, 2661, 2672, 2682
BstDSI	CCRYGG	1 cut(s)	1380
BstEII	GGTNACC	1 cut(s)	1375
BstFNI	CGCG	1 cut(s)	784
BstHHI	GCGC	3 cut(s)	178, 784, 2652
BstMAI	GTCTC	4 cut(s)	1964, 2217, 2290, 2365
BstMCI	CGRYCG	1 cut(s)	39
BstNI	CCWGG	8 cut(s)	404, 759, 1131, 1754, 2034, 2082, 2450, 2484
BstNSI	RCATGY	9 cut(s)	203, 704, 731, 944, 1566, 2432, 2471, 2479, 2791
BstPI	GGTNACC	1 cut(s)	1375
BstSFI	CTRYAG	1 cut(s)	1264
BstSLI	GKGCMC	4 cut(s)	1402, 1699, 2391, 2669
BstUI	CGCG	1 cut(s)	784
BstV1I	GCAGC	7 cut(s)	729, 1234, 1256, 1619, 2224, 2644, 2803
BstV2I	GAAGAC	3 cut(s)	682, 1154, 1667
BstX2I	RGATCY	3 cut(s)	470, 814, 883
BstXI	CCANNNNNNTGG	1 cut(s)	1354
BstYI	RGATCY	3 cut(s)	470, 814, 883
BstZI	CGGCCG	1 cut(s)	36
Bsu15I	ATCGAT	1 cut(s)	963
BsuI	GTATCC	1 cut(s)	2316
BsuRI	GGCC	4 cut(s)	38, 639, 1129, 1664
BsuTUI	ATCGAT	1 cut(s)	963
BtgI	CCRYGG	1 cut(s)	1380
BtsI	GCAGTG	2 cut(s)	1594, 2652
BtsIMutI	CAGTG	6 cut(s)	246, 1359, 1434, 1594, 1633, 2652
BveI	ACCTGC	2 cut(s)	228, 1426
Cac8I	GCNNGC	5 cut(s)	74, 201, 1827, 2572, 2789
CaiI	CAGNNNCTG	2 cut(s)	1613, 2800
CciI	TCATGA	1 cut(s)	1012
CfoI	GCGC	3 cut(s)	178, 784, 2652
Cfr13I	GGNCC	3 cut(s)	752, 833, 1577
ClaI	ATCGAT	1 cut(s)	963
CseI	GACGC	2 cut(s)	773, 2347
CsiI	ACCWGGT	1 cut(s)	757
Csp6I	GTAC	7 cut(s)	427, 762, 1254, 1415, 2186, 2751, 2847
CviQI	GTAC	7 cut(s)	427, 762, 1254, 1415, 2186, 2751, 2847
DdeI	CTNAG	9 cut(s)	342, 648, 845, 1328, 1659, 2508, 2661, 2672, 2682
DraI	TTTAAA	2 cut(s)	2160, 2539
DraIII	CACNNNGTG	3 cut(s)	542, 1406, 2642
DrdI	GACNNNNNNGTC	1 cut(s)	143
DseDI	GACNNNNNNGTC	1 cut(s)	143
EaeI	YGGCCR	1 cut(s)	36
EagI	CGGCCG	1 cut(s)	36
Eam1104I	CTCTTC	4 cut(s)	471, 664, 1356, 1962
EarI	CTCTTC	4 cut(s)	471, 664, 1356, 1962
EciI	GGCGGA	1 cut(s)	269
EclXI	CGGCCG	1 cut(s)	36
Eco130I	CCWWGG	4 cut(s)	430, 640, 1380, 1819
Eco47I	GGWCC	3 cut(s)	752, 833, 1577
Eco52I	CGGCCG	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	2459
Eco88I	CYCGRG	1 cut(s)	508
Eco91I	GGTNACC	1 cut(s)	1375
EcoO109I	RGGNCCY	1 cut(s)	1577
EcoO65I	GGTNACC	1 cut(s)	1375
EcoRI	GAATTC	1 cut(s)	608
EcoRII	CCWGG	8 cut(s)	402, 757, 1129, 1752, 2032, 2080, 2448, 2482
EcoT14I	CCWWGG	4 cut(s)	430, 640, 1380, 1819
EcoT22I	ATGCAT	3 cut(s)	1726, 2481, 2919
ErhI	CCWWGG	4 cut(s)	430, 640, 1380, 1819
Esp3I	CGTCTC	2 cut(s)	2290, 2365
FalI	AAGNNNNNCTT	2 cut(s)	2208, 2240
FaqI	GGGAC	5 cut(s)	352, 420, 448, 1897, 2944
FauI	CCCGC	1 cut(s)	1818
FbaI	TGATCA	2 cut(s)	18, 907
GlaI	GCGC	3 cut(s)	177, 783, 2651
GsuI	CTGGAG	3 cut(s)	71, 2739, 2822
HaeIII	GGCC	4 cut(s)	38, 639, 1129, 1664
HapII	CCGG	3 cut(s)	35, 105, 1905
HgaI	GACGC	2 cut(s)	773, 2347
HhaI	GCGC	3 cut(s)	178, 784, 2652
Hin1I	GRCGYC	2 cut(s)	1135, 2283
Hin6I	GCGC	3 cut(s)	176, 782, 2650
HinP1I	GCGC	3 cut(s)	176, 782, 2650
HincII	GTYRAC	4 cut(s)	367, 1843, 2039, 2221
HindII	GTYRAC	4 cut(s)	367, 1843, 2039, 2221
HpaII	CCGG	3 cut(s)	35, 105, 1905
Hpy188I	TCNGA	6 cut(s)	9, 475, 1065, 2439, 2511, 2526
Hpy99I	CGWCG	1 cut(s)	13
HpyCH4III	ACNGT	8 cut(s)	304, 454, 1615, 1628, 1840, 2193, 2535, 2851
HpyCH4IV	ACGT	6 cut(s)	571, 1135, 1396, 2283, 2339, 2638
HpyF3I	CTNAG	9 cut(s)	342, 648, 845, 1328, 1659, 2508, 2661, 2672, 2682
HpySE526I	ACGT	6 cut(s)	571, 1135, 1396, 2283, 2339, 2638
Hsp92I	GRCGYC	2 cut(s)	1135, 2283
HspAI	GCGC	3 cut(s)	176, 782, 2650
Ksp22I	TGATCA	2 cut(s)	18, 907
LguI	GCTCTTC	1 cut(s)	664
LmnI	GCTCC	5 cut(s)	10, 923, 1525, 2451, 2995
Lsp1109I	GCAGC	7 cut(s)	729, 1234, 1256, 1619, 2224, 2644, 2803
MabI	ACCWGGT	1 cut(s)	757
MaeII	ACGT	6 cut(s)	571, 1135, 1396, 2283, 2339, 2638
MbiI	CCGCTC	1 cut(s)	79
MflI	RGATCY	3 cut(s)	470, 814, 883
MhlI	GDGCHC	6 cut(s)	309, 1402, 1688, 1699, 2391, 2669
MlyI	GAGTC	6 cut(s)	131, 215, 488, 2670, 2741, 2832
MmeI	TCCRAC	2 cut(s)	32, 318
Mph1103I	ATGCAT	3 cut(s)	1726, 2481, 2919
MslI	CAYNNNNRTG	1 cut(s)	2082
MspA1I	CMGCKG	1 cut(s)	1247
MspI	CCGG	3 cut(s)	35, 105, 1905
Mva1269I	GAATGC	2 cut(s)	187, 2360
MvaI	CCWGG	8 cut(s)	404, 759, 1131, 1754, 2034, 2082, 2450, 2484
MvnI	CGCG	1 cut(s)	784
NciI	CCSGG	2 cut(s)	105, 1905
NcoI	CCATGG	1 cut(s)	1380
NlaIV	GGNNCC	5 cut(s)	6, 109, 537, 1429, 2991
NmeAIII	GCCGAG	1 cut(s)	1634
NmuCI	GTSAC	6 cut(s)	218, 244, 1731, 1798, 2597, 2857
NsiI	ATGCAT	3 cut(s)	1726, 2481, 2919
NspI	RCATGY	9 cut(s)	203, 704, 731, 944, 1566, 2432, 2471, 2479, 2791
NspV	TTCGAA	1 cut(s)	667
PaeI	GCATGC	2 cut(s)	203, 2791
PaeR7I	CTCGAG	1 cut(s)	508
PagI	TCATGA	1 cut(s)	1012
PciI	ACATGT	1 cut(s)	700
PciSI	GCTCTTC	1 cut(s)	664
PctI	GAATGC	2 cut(s)	187, 2360
PfeI	GAWTC	5 cut(s)	187, 251, 1058, 1189, 2093
PfoI	TCCNGGA	1 cut(s)	1752
PleI	GAGTC	6 cut(s)	131, 215, 487, 2670, 2740, 2831
PpsI	GAGTC	6 cut(s)	131, 215, 487, 2670, 2740, 2831
Ppu21I	YACGTR	1 cut(s)	1397
PpuMI	RGGWCCY	1 cut(s)	1577
PscI	ACATGT	1 cut(s)	700
PsiI	TTATAA	1 cut(s)	2262
Psp1406I	AACGTT	1 cut(s)	571
Psp5II	RGGWCCY	1 cut(s)	1577
Psp6I	CCWGG	8 cut(s)	402, 757, 1129, 1752, 2032, 2080, 2448, 2482
PspEI	GGTNACC	1 cut(s)	1375
PspGI	CCWGG	8 cut(s)	402, 757, 1129, 1752, 2032, 2080, 2448, 2482
PspN4I	GGNNCC	5 cut(s)	6, 109, 537, 1429, 2991
PspPI	GGNCC	3 cut(s)	752, 833, 1577
PspPPI	RGGWCCY	1 cut(s)	1577
PstNI	CAGNNNCTG	2 cut(s)	1613, 2800
PsuI	RGATCY	3 cut(s)	470, 814, 883
PvuII	CAGCTG	1 cut(s)	1247
RsaI	GTAC	7 cut(s)	428, 763, 1255, 1416, 2187, 2752, 2848
RsaNI	GTAC	7 cut(s)	427, 762, 1254, 1415, 2186, 2751, 2847
RseI	CAYNNNNRTG	1 cut(s)	2082
SapI	GCTCTTC	1 cut(s)	664
Sau96I	GGNCC	3 cut(s)	752, 833, 1577
SchI	GAGTC	6 cut(s)	131, 215, 488, 2670, 2741, 2832
SduI	GDGCHC	6 cut(s)	309, 1402, 1688, 1699, 2391, 2669
SexAI	ACCWGGT	1 cut(s)	757
SfcI	CTRYAG	1 cut(s)	1264
Sfr274I	CTCGAG	1 cut(s)	508
SfuI	TTCGAA	1 cut(s)	667
SinI	GGWCC	3 cut(s)	752, 833, 1577
SlaI	CTCGAG	1 cut(s)	508
SmiMI	CAYNNNNRTG	1 cut(s)	2082
SmlI	CTYRAG	6 cut(s)	151, 508, 1998, 2214, 2873, 2939
SmoI	CTYRAG	6 cut(s)	151, 508, 1998, 2214, 2873, 2939
SphI	GCATGC	2 cut(s)	203, 2791
SsiI	CCGC	7 cut(s)	39, 77, 216, 280, 1825, 2251, 2815
SspI	AATATT	1 cut(s)	1762
StyI	CCWWGG	4 cut(s)	430, 640, 1380, 1819
TaaI	ACNGT	8 cut(s)	304, 454, 1615, 1628, 1840, 2193, 2535, 2851
TaiI	ACGT	6 cut(s)	574, 1138, 1399, 2286, 2342, 2641
TatI	WGTACW	2 cut(s)	2185, 2846
TauI	GCSGC	4 cut(s)	41, 79, 2253, 2818
TfiI	GAWTC	5 cut(s)	187, 251, 1058, 1189, 2093
TscAI	CASTG	6 cut(s)	253, 1359, 1441, 1594, 1633, 2659
TseFI	GTSAC	6 cut(s)	218, 244, 1731, 1798, 2597, 2857
TseI	GCWGC	7 cut(s)	742, 1244, 1247, 1607, 2237, 2657, 2791
Tsp45I	GTSAC	6 cut(s)	218, 244, 1731, 1798, 2597, 2857
TspGWI	ACGGA	1 cut(s)	2410
TspRI	CASTG	6 cut(s)	253, 1359, 1441, 1594, 1633, 2659
VneI	GTGCAC	3 cut(s)	1398, 1695, 2665
VpaK11BI	GGWCC	3 cut(s)	752, 833, 1577
XapI	RAATTY	6 cut(s)	608, 1197, 1950, 2021, 2608, 2618
XbaI	TCTAGA	1 cut(s)	2591
XceI	RCATGY	9 cut(s)	203, 704, 731, 944, 1566, 2432, 2471, 2479, 2791
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1519
XhoI	CTCGAG	1 cut(s)	508
XmaJI	CCTAGG	1 cut(s)	640
ZraI	GACGTC	2 cut(s)	1136, 2284
Zsp2I	ATGCAT	3 cut(s)	1726, 2481, 2919

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.