AT4G16510

Aminoacyl-tRNA editing domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0002840
Physical Location & Seq
Forward (+)
9302602 .. 9305838
3237 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G16510.1

Sequence Viewer

Length: 699 bp
ATGGACGACGGAGAAGGCATGGAAACTGCAGCGGCAGAGCTTGAGAGACTCCAAATTGAAATCCTCCACAAAATCTCCATTCTTGAGAGCTCTTTTCTCCCACAGAATTCCTCTGCTGCTCCGTCGCCTTCTCTACCGGTTGATGAAAACGAAACTGTGACTCGCCTCTCCACCATTCTCCAGTCCGGCGGCGTTAACGACTTCTGCTTCAAGAGAGTTGCTACCGATTACTATGACTGGCCTCTCGAATCTCGTCGCGACGTTCTCGGCGCTTCCTCAGTCGACCATCTCTGCAAGAGTATTGTTCTGGTTAATACTCAAGCTGCATCAAATATTTTGGATTGCAGTGATCCAAACAACTCAAAATACTATGTGGTTGTGGTTCAGTATACTGCTAGATTCAATGCTGAAGCAGTGAAGCAGTTTCTTTATTCACTAAACGAGGGCAAGATCCCAAAGAAAAGATTTAATCTGAGACTTGCTCCTGAGGAGACGTCGATTAAATTGACGGGGTTTGAGCATAATGGGGTAACCTGTATTGGTATGAAGACAAACATACCGGTTATATTGGATGAGGCTATAACCAAACTTAAACCGGATTTCTTCTGGTTGGGTGGTGGAGAAATCGATCTGAAGCTCGGTGTCAGAACATCCGAATTCCTTGAATTTGTGAAACCATTCATTGTTCCTTGCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
tRNA_edit

Protein Analysis

232

Amino Acids

25.77

Weight (kDa)

5.0

Isoelectric Point (pI)

44.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA_edit PF04073 105 - 222 1.9e-08 Aminoacyl-tRNA editing domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 497
AccI GTMKAC 2 cut(s) 282, 389
AccII CGCG 1 cut(s) 258
AciI CCGC 2 cut(s) 32, 189
AclWI GGATC 2 cut(s) 344, 445
AcsI RAATTY 3 cut(s) 106, 656, 665
AcuI CTGAAG 2 cut(s) 429, 653
AcyI GRCGYC 1 cut(s) 494
AgeI ACCGGT 2 cut(s) 136, 559
AgsI TTSAA 4 cut(s) 59, 211, 403, 665
AluBI AGCT 4 cut(s) 40, 90, 323, 637
AluI AGCT 4 cut(s) 40, 90, 323, 637
Alw21I GWGCWC 1 cut(s) 92
Alw26I GTCTC 3 cut(s) 40, 469, 485
AlwI GGATC 2 cut(s) 344, 445
AoxI GGCC 1 cut(s) 239
ApeKI GCWGC 3 cut(s) 29, 116, 323
ApoI RAATTY 3 cut(s) 106, 656, 665
AsiGI ACCGGT 2 cut(s) 136, 559
Asp700I GAANNNNTTC 1 cut(s) 677
AspLEI GCGC 1 cut(s) 272
AxyI CCTNAGG 1 cut(s) 486
BanII GRGCYC 1 cut(s) 92
BbsI GAAGAC 1 cut(s) 554
Bbv12I GWGCWC 1 cut(s) 92
BbvI GCAGC 3 cut(s) 41, 103, 310
BccI CCATC 1 cut(s) 294
BcoDI GTCTC 3 cut(s) 40, 469, 485
BfaI CTAG 1 cut(s) 396
BfmI CTRYAG 1 cut(s) 27
BfoI RGCGCY 1 cut(s) 273
BisI GCNGC 5 cut(s) 30, 33, 117, 190, 324
BlsI GCNGC 5 cut(s) 31, 34, 118, 191, 325
BmsI GCATC 1 cut(s) 335
BpiI GAAGAC 1 cut(s) 554
BplI GAGNNNNNCTC 2 cut(s) 466, 498
BpmI CTGGAG 1 cut(s) 164
BpuEI CTTGAG 3 cut(s) 62, 104, 303
Bsa29I ATCGAT 1 cut(s) 627
BsaHI GRCGYC 1 cut(s) 494
BsaWI WCCGGW 3 cut(s) 136, 559, 595
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bse118I RCCGGY 2 cut(s) 136, 559
Bse1I ACTGG 2 cut(s) 181, 242
Bse21I CCTNAGG 1 cut(s) 486
BseCI ATCGAT 1 cut(s) 627
BseGI GGATG 2 cut(s) 577, 650
BseMII CTCAG 3 cut(s) 291, 464, 477
BseNI ACTGG 2 cut(s) 181, 242
BseRI GAGGAG 1 cut(s) 503
BseXI GCAGC 3 cut(s) 41, 103, 310
Bsh1236I CGCG 1 cut(s) 258
BshFI GGCC 1 cut(s) 241
BshTI ACCGGT 2 cut(s) 136, 559
BshVI ATCGAT 1 cut(s) 627
BsiHKAI GWGCWC 1 cut(s) 92
BsiSI CCGG 4 cut(s) 137, 186, 560, 596
BsmAI GTCTC 3 cut(s) 40, 469, 485
BsmBI CGTCTC 1 cut(s) 485
BsnI GGCC 1 cut(s) 241
Bsp1286I GDGCHC 1 cut(s) 92
Bsp143I GATC 3 cut(s) 349, 450, 628
Bsp68I TCGCGA 1 cut(s) 258
BspACI CCGC 2 cut(s) 32, 189
BspANI GGCC 1 cut(s) 241
BspCNI CTCAG 3 cut(s) 290, 465, 478
BspDI ATCGAT 1 cut(s) 627
BspFNI CGCG 1 cut(s) 258
BspMAI CTGCAG 1 cut(s) 31
BspPI GGATC 2 cut(s) 344, 445
BsrFI RCCGGY 2 cut(s) 136, 559
BsrI ACTGG 2 cut(s) 181, 242
BssAI RCCGGY 2 cut(s) 136, 559
BssMI GATC 3 cut(s) 349, 450, 628
BssNAI GTATAC 1 cut(s) 390
BssNI GRCGYC 1 cut(s) 494
Bst1107I GTATAC 1 cut(s) 390
Bst4CI ACNGT 1 cut(s) 157
BstACI GRCGYC 1 cut(s) 494
BstDEI CTNAG 3 cut(s) 277, 473, 486
BstEII GGTNACC 1 cut(s) 529
BstF5I GGATG 2 cut(s) 577, 650
BstFNI CGCG 1 cut(s) 258
BstH2I RGCGCY 1 cut(s) 273
BstHHI GCGC 1 cut(s) 272
BstKTI GATC 3 cut(s) 352, 453, 631
BstMAI GTCTC 3 cut(s) 40, 469, 485
BstMBI GATC 3 cut(s) 349, 450, 628
BstPI GGTNACC 1 cut(s) 529
BstSFI CTRYAG 1 cut(s) 27
BstUI CGCG 1 cut(s) 258
BstV1I GCAGC 3 cut(s) 41, 103, 310
BstV2I GAAGAC 1 cut(s) 554
BstX2I RGATCY 1 cut(s) 450
BstYI RGATCY 1 cut(s) 450
BstZ17I GTATAC 1 cut(s) 390
Bsu15I ATCGAT 1 cut(s) 627
Bsu36I CCTNAGG 1 cut(s) 486
BsuRI GGCC 1 cut(s) 241
BsuTUI ATCGAT 1 cut(s) 627
BtsCI GGATG 2 cut(s) 577, 650
BtsI GCAGTG 2 cut(s) 352, 420
BtsIMutI CAGTG 2 cut(s) 352, 420
BtuMI TCGCGA 1 cut(s) 258
CfoI GCGC 1 cut(s) 272
Cfr10I RCCGGY 2 cut(s) 136, 559
ClaI ATCGAT 1 cut(s) 627
CspAI ACCGGT 2 cut(s) 136, 559
CviAII CATG 1 cut(s) 19
CviJI RGCY 6 cut(s) 40, 90, 241, 323, 578, 637
CviKI_1 RGCY 6 cut(s) 40, 90, 241, 323, 578, 637
DdeI CTNAG 3 cut(s) 277, 473, 486
DpnI GATC 3 cut(s) 351, 452, 630
DpnII GATC 3 cut(s) 349, 450, 628
Ecl136II GAGCTC 1 cut(s) 90
Eco24I GRGCYC 1 cut(s) 92
Eco53kI GAGCTC 1 cut(s) 90
Eco57I CTGAAG 2 cut(s) 429, 653
Eco81I CCTNAGG 1 cut(s) 486
Eco91I GGTNACC 1 cut(s) 529
EcoICRI GAGCTC 1 cut(s) 90
EcoO65I GGTNACC 1 cut(s) 529
EcoRI GAATTC 2 cut(s) 106, 656
EcoT38I GRGCYC 1 cut(s) 92
Esp3I CGTCTC 1 cut(s) 485
FaeI CATG 1 cut(s) 22
FaiI YATR 9 cut(s) 20, 234, 372, 390, 522, 545, 557, 566, 581
FatI CATG 1 cut(s) 18
FblI GTMKAC 2 cut(s) 282, 389
Fnu4HI GCNGC 5 cut(s) 30, 33, 117, 190, 324
FokI GGATG 2 cut(s) 584, 637
FriOI GRGCYC 1 cut(s) 92
Fsp4HI GCNGC 5 cut(s) 30, 33, 117, 190, 324
FspBI CTAG 1 cut(s) 396
GlaI GCGC 1 cut(s) 271
GluI GCNGC 5 cut(s) 30, 33, 117, 190, 324
GsuI CTGGAG 1 cut(s) 164
HaeII RGCGCY 1 cut(s) 273
HaeIII GGCC 1 cut(s) 241
HapII CCGG 4 cut(s) 137, 186, 560, 596
HhaI GCGC 1 cut(s) 272
Hin1I GRCGYC 1 cut(s) 494
Hin1II CATG 1 cut(s) 22
Hin6I GCGC 1 cut(s) 270
HinP1I GCGC 1 cut(s) 270
HincII GTYRAC 2 cut(s) 196, 283
HindII GTYRAC 2 cut(s) 196, 283
HinfI GANTC 4 cut(s) 48, 160, 248, 399
HpaI GTTAAC 1 cut(s) 196
HpaII CCGG 4 cut(s) 137, 186, 560, 596
Hpy166II GTNNAC 3 cut(s) 196, 283, 390
Hpy188I TCNGA 4 cut(s) 474, 633, 647, 655
Hpy188III TCNNGA 5 cut(s) 83, 211, 245, 257, 485
Hpy8I GTNNAC 3 cut(s) 196, 283, 390
Hpy99I CGWCG 5 cut(s) 11, 127, 258, 263, 499
HpyAV CCTTC 2 cut(s) 8, 138
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4IV ACGT 2 cut(s) 261, 494
HpyCH4V TGCA 5 cut(s) 29, 294, 326, 345, 693
HpyF3I CTNAG 3 cut(s) 277, 473, 486
HpySE526I ACGT 2 cut(s) 261, 494
Hsp92I GRCGYC 1 cut(s) 494
Hsp92II CATG 1 cut(s) 22
HspAI GCGC 1 cut(s) 270
KspAI GTTAAC 1 cut(s) 196
Kzo9I GATC 3 cut(s) 349, 450, 628
LmnI GCTCC 2 cut(s) 124, 487
Lsp1109I GCAGC 3 cut(s) 41, 103, 310
LweI GCATC 1 cut(s) 335
MaeI CTAG 1 cut(s) 396
MaeII ACGT 2 cut(s) 261, 494
MaeIII GTNAC 2 cut(s) 157, 529
MalI GATC 3 cut(s) 351, 452, 630
MboI GATC 3 cut(s) 349, 450, 628
MboII GAAGA 2 cut(s) 559, 595
MflI RGATCY 1 cut(s) 450
MhlI GDGCHC 1 cut(s) 92
MluCI AATT 5 cut(s) 54, 106, 503, 656, 665
MlyI GAGTC 2 cut(s) 42, 154
MnlI CCTC 8 cut(s) 74, 121, 176, 252, 286, 436, 481, 568
MroXI GAANNNNTTC 1 cut(s) 677
MseI TTAA 5 cut(s) 195, 312, 468, 501, 591
MspA1I CMGCKG 1 cut(s) 32
MspI CCGG 4 cut(s) 137, 186, 560, 596
MvnI CGCG 1 cut(s) 258
NdeII GATC 3 cut(s) 349, 450, 628
NlaIII CATG 1 cut(s) 22
NmeAIII GCCGAG 1 cut(s) 246
NmuCI GTSAC 1 cut(s) 157
NruI TCGCGA 1 cut(s) 258
PdmI GAANNNNTTC 1 cut(s) 677
PfeI GAWTC 2 cut(s) 248, 399
PinAI ACCGGT 2 cut(s) 136, 559
PkrI GCNGC 5 cut(s) 31, 34, 118, 191, 325
PleI GAGTC 2 cut(s) 42, 154
PpsI GAGTC 2 cut(s) 42, 154
Psp124BI GAGCTC 1 cut(s) 92
PspEI GGTNACC 1 cut(s) 529
PstI CTGCAG 1 cut(s) 31
PsuI RGATCY 1 cut(s) 450
RruI TCGCGA 1 cut(s) 258
SacI GAGCTC 1 cut(s) 92
SalI GTCGAC 1 cut(s) 281
SaqAI TTAA 5 cut(s) 195, 312, 468, 501, 591
SatI GCNGC 5 cut(s) 30, 33, 117, 190, 324
Sau3AI GATC 3 cut(s) 349, 450, 628
SchI GAGTC 2 cut(s) 42, 154
SduI GDGCHC 1 cut(s) 92
SetI ASST 7 cut(s) 42, 92, 264, 325, 497, 536, 639
SfaNI GCATC 1 cut(s) 335
SfcI CTRYAG 1 cut(s) 27
SmlI CTYRAG 3 cut(s) 41, 83, 318
SmoI CTYRAG 3 cut(s) 41, 83, 318
Sse9I AATT 5 cut(s) 54, 106, 503, 656, 665
SsiI CCGC 2 cut(s) 32, 189
SspI AATATT 1 cut(s) 334
SspMI CTAG 1 cut(s) 396
SstI GAGCTC 1 cut(s) 92
TaaI ACNGT 1 cut(s) 157
TaiI ACGT 2 cut(s) 264, 497
TaqI TCGA 4 cut(s) 246, 282, 497, 627
TasI AATT 5 cut(s) 54, 106, 503, 656, 665
TauI GCSGC 2 cut(s) 35, 192
TfiI GAWTC 2 cut(s) 248, 399
Tru1I TTAA 5 cut(s) 195, 312, 468, 501, 591
Tru9I TTAA 5 cut(s) 195, 312, 468, 501, 591
TscAI CASTG 2 cut(s) 352, 420
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 3 cut(s) 29, 116, 323
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 3 cut(s) 159, 560, 670
TspGWI ACGGA 2 cut(s) 24, 111
TspRI CASTG 2 cut(s) 352, 420
XapI RAATTY 3 cut(s) 106, 656, 665
XmiI GTMKAC 2 cut(s) 282, 389
XmnI GAANNNNTTC 1 cut(s) 677
XspI CTAG 1 cut(s) 396
ZraI GACGTC 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.