Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002840

Physical Location & Seq

Genomic Coordinates Reverse (-)

20643220 .. 20643917

Gene Structure 698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g25460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCAACCAAAGTTTTCATCTACCCATCCATTCTCTTCTTTGCTTTCTTCAACCCAACTCACCTCAACCCCCAGACCTCTCTTCTCTTCTCTGCAAATTACATCAAGCCCTACCCCTTCGCTACCGCTAGAGTAACGTCCCTAAGACCTGATCTAAACGGTGATTTGGACGCTAGAACGATCTCGGAGTGGAGAGATCCCTCGCGATTCCACCCTTGGTGCCGGAGTGAAGGGCTGCAGCTTCATGGTAACGAGCAAAGGATAGAAGTTGGCGATGGAACCACTGCATTTCCCCCCAACAGTGGCAGCTCTTCTTCTCACGAAGATGTCGATGTTTCTCTGTTAATTGGGCTGGGCCCTATTGTTAGGTTTCTGTTTATTGGGCCTCATGTTTTGGACCCATTGTCTTACTTTATGTATGCTTGTACCCCTTGTGGGCTTCCCATTCGCGGGCCTGTTTGTATTAAGCTGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

17.57

Weight (kDa)

6.49

Isoelectric Point (pI)

39.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16510 AT4G16510
fragaria_vesca	FvH4_2g25460 FvH4_3g26313 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g26851 FvH4_5g38900 FvH4_6g19840 FvH4_6g26281 FvH4_7g10800
malus_domestica	MD00G1115100.v1.1 MD06G1061300.v1.1
prunus_persica	Prupe.5G072600_v2.0.a1
pyrus_communis	pycom06g05140
rosa_chinensis	RchiOBHm_Chr1g0333271 RchiOBHm_Chr2g0095921 RchiOBHm_Chr2g0099411 RchiOBHm_Chr7g0202881 RchiOBHm_Chr7g0233531
rosa_laevigata	RLG00000003567 RLG00000033632
rosa_multiflora	Rmu_sc0003729.1_g000007 Rmu_sc0033032.1_g000002
rosa_roxburghii	Rroxscaffold_1G00038270 Rroxscaffold_2G00110700 Rroxscaffold_3G00254210
rosa_rugosa	Rorug07G0073500
rosa_samantha	Rh2DG104700 Rh2DG133400 Rh7AG201300 Rh7BG201700 Rh7CG212800 Rh7DG208300
rosa_wichuraiana	Rw7G017610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	219
AccII	CGCG	2 cut(s)	205, 450
AciI	CCGC	2 cut(s)	126, 450
AclWI	GGATC	1 cut(s)	191
AfaI	GTAC	1 cut(s)	427
AfiI	CCNNNNNNNGG	4 cut(s)	302, 435, 449, 450
AgsI	TTSAA	1 cut(s)	52
AhdI	GACNNNNNGTC	1 cut(s)	403
AluBI	AGCT	4 cut(s)	241, 309, 469, 474
AluI	AGCT	4 cut(s)	241, 309, 469, 474
AlwI	GGATC	1 cut(s)	191
AoxI	GGCC	3 cut(s)	355, 383, 452
ApaI	GGGCCC	1 cut(s)	359
ApeKI	GCWGC	3 cut(s)	235, 238, 306
AspS9I	GGNCC	5 cut(s)	355, 356, 383, 397, 452
AsuHPI	GGTGA	2 cut(s)	53, 173
AvaII	GGWCC	1 cut(s)	397
BaeGI	GKGCMC	1 cut(s)	359
BanI	GGYRCC	1 cut(s)	219
BanII	GRGCYC	1 cut(s)	359
BbvI	GCAGC	3 cut(s)	222, 250, 318
BccI	CCATC	2 cut(s)	34, 269
BfaI	CTAG	3 cut(s)	129, 174, 475
BfmI	CTRYAG	1 cut(s)	236
BisI	GCNGC	3 cut(s)	236, 239, 307
BlpI	GCTNAGC	1 cut(s)	470
BlsI	GCNGC	3 cut(s)	237, 240, 308
Bme18I	GGWCC	1 cut(s)	397
BmeRI	GACNNNNNGTC	1 cut(s)	403
BmgT120I	GGNCC	5 cut(s)	355, 356, 383, 397, 452
BmiI	GGNNCC	4 cut(s)	221, 280, 357, 399
Bpu1102I	GCTNAGC	1 cut(s)	470
BsaJI	CCNNGG	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	4 cut(s)	302, 435, 449, 450
BseDI	CCNNGG	1 cut(s)	215
BseGI	GGATG	1 cut(s)	26
BseLI	CCNNNNNNNGG	4 cut(s)	302, 435, 449, 450
BseMII	CTCAG	1 cut(s)	461
BseSI	GKGCMC	1 cut(s)	359
BseXI	GCAGC	3 cut(s)	222, 250, 318
BseYI	CCCAGC	1 cut(s)	352
Bsh1236I	CGCG	2 cut(s)	205, 450
BshFI	GGCC	3 cut(s)	357, 385, 454
BshNI	GGYRCC	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	223
BslFI	GGGAC	1 cut(s)	124
BslI	CCNNNNNNNGG	4 cut(s)	302, 435, 449, 450
BsmFI	GGGAC	1 cut(s)	124
BsnI	GGCC	3 cut(s)	357, 385, 454
Bsp120I	GGGCCC	1 cut(s)	355
Bsp1286I	GDGCHC	1 cut(s)	359
Bsp143I	GATC	3 cut(s)	151, 180, 196
Bsp1720I	GCTNAGC	1 cut(s)	470
Bsp68I	TCGCGA	1 cut(s)	205
BspACI	CCGC	2 cut(s)	126, 450
BspANI	GGCC	3 cut(s)	357, 385, 454
BspCNI	CTCAG	1 cut(s)	462
BspFNI	CGCG	2 cut(s)	205, 450
BspLI	GGNNCC	4 cut(s)	221, 280, 357, 399
BspMAI	CTGCAG	1 cut(s)	240
BspPI	GGATC	1 cut(s)	191
BspQI	GCTCTTC	1 cut(s)	316
BspT107I	GGYRCC	1 cut(s)	219
BssECI	CCNNGG	1 cut(s)	215
BssMI	GATC	3 cut(s)	151, 180, 196
BssT1I	CCWWGG	1 cut(s)	215
Bst4CI	ACNGT	2 cut(s)	161, 302
Bst6I	CTCTTC	4 cut(s)	41, 87, 92, 316
BstC8I	GCNNGC	1 cut(s)	452
BstDEI	CTNAG	2 cut(s)	143, 470
BstF5I	GGATG	1 cut(s)	26
BstFNI	CGCG	2 cut(s)	205, 450
BstKTI	GATC	3 cut(s)	154, 183, 199
BstMBI	GATC	3 cut(s)	151, 180, 196
BstSFI	CTRYAG	1 cut(s)	236
BstSLI	GKGCMC	1 cut(s)	359
BstUI	CGCG	2 cut(s)	205, 450
BstV1I	GCAGC	3 cut(s)	222, 250, 318
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BsuRI	GGCC	3 cut(s)	357, 385, 454
BtgZI	GCGATG	1 cut(s)	288
BtsCI	GGATG	1 cut(s)	26
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	2 cut(s)	282, 307
BtuMI	TCGCGA	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	452
Cfr13I	GGNCC	5 cut(s)	355, 356, 383, 397, 452
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	426
CviAII	CATG	2 cut(s)	245, 389
CviQI	GTAC	1 cut(s)	426
DdeI	CTNAG	2 cut(s)	143, 470
DpnI	GATC	3 cut(s)	153, 182, 198
DpnII	GATC	3 cut(s)	151, 180, 196
DriI	GACNNNNNGTC	1 cut(s)	403
Eam1104I	CTCTTC	4 cut(s)	41, 87, 92, 316
Eam1105I	GACNNNNNGTC	1 cut(s)	403
EarI	CTCTTC	4 cut(s)	41, 87, 92, 316
Eco130I	CCWWGG	1 cut(s)	215
Eco24I	GRGCYC	1 cut(s)	359
Eco47I	GGWCC	1 cut(s)	397
EcoO109I	RGGNCCY	1 cut(s)	356
EcoT14I	CCWWGG	1 cut(s)	215
EcoT38I	GRGCYC	1 cut(s)	359
ErhI	CCWWGG	1 cut(s)	215
FaeI	CATG	2 cut(s)	248, 392
FaiI	YATR	4 cut(s)	246, 390, 416, 420
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	2 cut(s)	244, 388
FauI	CCCGC	1 cut(s)	443
Fnu4HI	GCNGC	3 cut(s)	236, 239, 307
FokI	GGATG	1 cut(s)	13
FriOI	GRGCYC	1 cut(s)	359
Fsp4HI	GCNGC	3 cut(s)	236, 239, 307
FspBI	CTAG	3 cut(s)	129, 174, 475
GluI	GCNGC	3 cut(s)	236, 239, 307
GsaI	CCCAGC	1 cut(s)	356
HaeIII	GGCC	3 cut(s)	357, 385, 454
HapII	CCGG	1 cut(s)	223
HgaI	GACGC	1 cut(s)	179
Hin1II	CATG	2 cut(s)	248, 392
HinfI	GANTC	1 cut(s)	207
HpaII	CCGG	1 cut(s)	223
HphI	GGTGA	2 cut(s)	53, 173
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	2 cut(s)	204, 320
HpyAV	CCTTC	2 cut(s)	127, 224
HpyCH4III	ACNGT	2 cut(s)	161, 302
HpyCH4IV	ACGT	1 cut(s)	137
HpyCH4V	TGCA	3 cut(s)	95, 238, 287
HpyF3I	CTNAG	2 cut(s)	143, 470
HpySE526I	ACGT	1 cut(s)	137
Hsp92II	CATG	2 cut(s)	248, 392
Kzo9I	GATC	3 cut(s)	151, 180, 196
LguI	GCTCTTC	1 cut(s)	316
LpnPI	CCDG	5 cut(s)	86, 162, 236, 338, 468
Lsp1109I	GCAGC	3 cut(s)	222, 250, 318
MaeI	CTAG	3 cut(s)	129, 174, 475
MaeII	ACGT	1 cut(s)	137
MaeIII	GTNAC	2 cut(s)	133, 248
MalI	GATC	3 cut(s)	153, 182, 198
MboI	GATC	3 cut(s)	151, 180, 196
MboII	GAAGA	7 cut(s)	28, 40, 74, 79, 303, 306, 335
MflI	RGATCY	1 cut(s)	196
MhlI	GDGCHC	1 cut(s)	359
MluCI	AATT	2 cut(s)	97, 345
MnlI	CCTC	4 cut(s)	74, 88, 211, 396
MseI	TTAA	2 cut(s)	344, 465
MslI	CAYNNNNRTG	1 cut(s)	324
MspI	CCGG	1 cut(s)	223
MvnI	CGCG	2 cut(s)	205, 450
NdeII	GATC	3 cut(s)	151, 180, 196
NlaIII	CATG	2 cut(s)	248, 392
NlaIV	GGNNCC	4 cut(s)	221, 280, 357, 399
NruI	TCGCGA	1 cut(s)	205
PciSI	GCTCTTC	1 cut(s)	316
PcsI	WCGNNNNNNNCGW	1 cut(s)	327
PfeI	GAWTC	1 cut(s)	207
PkrI	GCNGC	3 cut(s)	237, 240, 308
PspFI	CCCAGC	1 cut(s)	352
PspN4I	GGNNCC	4 cut(s)	221, 280, 357, 399
PspOMI	GGGCCC	1 cut(s)	355
PspPI	GGNCC	5 cut(s)	355, 356, 383, 397, 452
PstI	CTGCAG	1 cut(s)	240
PsuI	RGATCY	1 cut(s)	196
RruI	TCGCGA	1 cut(s)	205
RsaI	GTAC	1 cut(s)	427
RsaNI	GTAC	1 cut(s)	426
RseI	CAYNNNNRTG	1 cut(s)	324
SapI	GCTCTTC	1 cut(s)	316
SaqAI	TTAA	2 cut(s)	344, 465
SatI	GCNGC	3 cut(s)	236, 239, 307
Sau3AI	GATC	3 cut(s)	151, 180, 196
Sau96I	GGNCC	5 cut(s)	355, 356, 383, 397, 452
SduI	GDGCHC	1 cut(s)	359
SetI	ASST	9 cut(s)	66, 80, 140, 151, 243, 311, 371, 471, 476
SfcI	CTRYAG	1 cut(s)	236
SinI	GGWCC	1 cut(s)	397
SmiMI	CAYNNNNRTG	1 cut(s)	324
Sse9I	AATT	2 cut(s)	97, 345
SsiI	CCGC	2 cut(s)	126, 450
SspMI	CTAG	3 cut(s)	129, 174, 475
StyI	CCWWGG	1 cut(s)	215
TaaI	ACNGT	2 cut(s)	161, 302
TaiI	ACGT	1 cut(s)	140
TaqI	TCGA	1 cut(s)	330
TasI	AATT	2 cut(s)	97, 345
TfiI	GAWTC	1 cut(s)	207
Tru1I	TTAA	2 cut(s)	344, 465
Tru9I	TTAA	2 cut(s)	344, 465
TscAI	CASTG	2 cut(s)	289, 307
TseI	GCWGC	3 cut(s)	235, 238, 306
TspDTI	ATGAA	2 cut(s)	7, 233
TspRI	CASTG	2 cut(s)	289, 307
VpaK11BI	GGWCC	1 cut(s)	397
XspI	CTAG	3 cut(s)	129, 174, 475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.