Rh2DG104700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002840
Physical Location & Seq
Reverse (-)
8549853 .. 8550426
574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG104700.1

Sequence Viewer

Length: 252 bp
ATGCCGCTAGAAAAACGTCCTCGAGACCGGATTAGTCCCCGAGATATGATTACGGTGATTTGGACGCTAGATCGACCCCGTCTTTTTCAAAGACAAATGAGTGGGGAGATCCCTCGAGATTCCATCCTGGGTGCCGGAGCGAAGGTTCGCAGCTTCATGGTAGCGAGCATAGGAGAGAAAACGGTGGCGGAACCATTACAACACCCCTCGACAGCGGCGCTGTTCCTTATGGAGATGGCGATGAATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.41

Weight (kDa)

10.21

Isoelectric Point (pI)

46.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 131
AciI CCGC 3 cut(s) 5, 188, 215
AclWI GGATC 1 cut(s) 103
AcsI RAATTY 1 cut(s) 244
AgsI TTSAA 1 cut(s) 89
AjnI CCWGG 1 cut(s) 126
AloI GAACNNNNNNTCC 2 cut(s) 129, 161
AluBI AGCT 1 cut(s) 153
AluI AGCT 1 cut(s) 153
Alw26I GTCTC 1 cut(s) 18
AlwI GGATC 1 cut(s) 103
Ama87I CYCGRG 3 cut(s) 21, 39, 114
ApeKI GCWGC 1 cut(s) 150
ApoI RAATTY 1 cut(s) 244
AspLEI GCGC 1 cut(s) 220
AsuHPI GGTGA 1 cut(s) 67
AvaI CYCGRG 3 cut(s) 21, 39, 114
BanI GGYRCC 1 cut(s) 131
BbvI GCAGC 1 cut(s) 162
BccI CCATC 2 cut(s) 131, 229
BciT130I CCWGG 1 cut(s) 128
BcoDI GTCTC 1 cut(s) 18
BfaI CTAG 2 cut(s) 8, 68
BfoI RGCGCY 1 cut(s) 221
BisI GCNGC 3 cut(s) 5, 151, 216
BlsI GCNGC 3 cut(s) 6, 152, 217
Bme1390I CCNGG 1 cut(s) 128
BmeT110I CYCGRG 3 cut(s) 21, 39, 114
BmiI GGNNCC 2 cut(s) 133, 192
BmrFI CCNGG 1 cut(s) 128
BsaI GGTCTC 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 127
BsaWI WCCGGW 1 cut(s) 27
BsaXI ACNNNNNCTCC 2 cut(s) 129, 159
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 1 cut(s) 123
BseXI GCAGC 1 cut(s) 162
BshNI GGYRCC 1 cut(s) 131
BsiHKCI CYCGRG 3 cut(s) 21, 39, 114
BsiSI CCGG 2 cut(s) 28, 135
BslFI GGGAC 1 cut(s) 21
BsmAI GTCTC 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 21
Bso31I GGTCTC 1 cut(s) 18
BsoBI CYCGRG 3 cut(s) 21, 39, 114
Bsp143I GATC 2 cut(s) 70, 108
BspACI CCGC 3 cut(s) 5, 188, 215
BspLI GGNNCC 2 cut(s) 133, 192
BspPI GGATC 1 cut(s) 103
BspT107I GGYRCC 1 cut(s) 131
BspTNI GGTCTC 1 cut(s) 18
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 2 cut(s) 70, 108
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 2 cut(s) 55, 184
BstC8I GCNNGC 1 cut(s) 166
BstF5I GGATG 1 cut(s) 123
BstH2I RGCGCY 1 cut(s) 221
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 2 cut(s) 73, 111
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 2 cut(s) 70, 108
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 108
BstYI RGATCY 1 cut(s) 108
BtsCI GGATG 1 cut(s) 123
Cac8I GCNNGC 1 cut(s) 166
CfoI GCGC 1 cut(s) 220
CseI GACGC 1 cut(s) 73
CviAII CATG 1 cut(s) 157
CviJI RGCY 1 cut(s) 153
CviKI_1 RGCY 1 cut(s) 153
DpnI GATC 2 cut(s) 72, 110
DpnII GATC 2 cut(s) 70, 108
EciI GGCGGA 1 cut(s) 203
Eco31I GGTCTC 1 cut(s) 18
Eco88I CYCGRG 3 cut(s) 21, 39, 114
EcoRII CCWGG 1 cut(s) 126
FaeI CATG 1 cut(s) 160
FaiI YATR 4 cut(s) 47, 158, 170, 230
FaqI GGGAC 1 cut(s) 21
FatI CATG 1 cut(s) 156
Fnu4HI GCNGC 3 cut(s) 5, 151, 216
FokI GGATG 1 cut(s) 110
Fsp4HI GCNGC 3 cut(s) 5, 151, 216
FspBI CTAG 2 cut(s) 8, 68
GlaI GCGC 1 cut(s) 219
GluI GCNGC 3 cut(s) 5, 151, 216
HaeII RGCGCY 1 cut(s) 221
HapII CCGG 2 cut(s) 28, 135
HgaI GACGC 1 cut(s) 73
HhaI GCGC 1 cut(s) 220
Hin1II CATG 1 cut(s) 160
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HinfI GANTC 1 cut(s) 119
HpaII CCGG 2 cut(s) 28, 135
HphI GGTGA 1 cut(s) 67
Hpy188III TCNNGA 2 cut(s) 23, 116
HpyAV CCTTC 1 cut(s) 136
HpyCH4III ACNGT 2 cut(s) 55, 184
HpyCH4IV ACGT 1 cut(s) 16
HpySE526I ACGT 1 cut(s) 16
Hsp92II CATG 1 cut(s) 160
HspAI GCGC 1 cut(s) 218
Kzo9I GATC 2 cut(s) 70, 108
LmnI GCTCC 1 cut(s) 137
LpnPI CCDG 4 cut(s) 41, 113, 140, 148
Lsp1109I GCAGC 1 cut(s) 162
MaeI CTAG 2 cut(s) 8, 68
MaeII ACGT 1 cut(s) 16
MalI GATC 2 cut(s) 72, 110
MboI GATC 2 cut(s) 70, 108
MflI RGATCY 1 cut(s) 108
MluCI AATT 1 cut(s) 244
MnlI CCTC 3 cut(s) 30, 123, 217
MspA1I CMGCKG 1 cut(s) 215
MspI CCGG 2 cut(s) 28, 135
MspR9I CCNGG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 128
NdeII GATC 2 cut(s) 70, 108
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 2 cut(s) 133, 192
PaeR7I CTCGAG 2 cut(s) 21, 114
PfeI GAWTC 1 cut(s) 119
PflFI GACNNNGTC 1 cut(s) 78
PkrI GCNGC 3 cut(s) 6, 152, 217
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 2 cut(s) 133, 192
PsuI RGATCY 1 cut(s) 108
PsyI GACNNNGTC 1 cut(s) 78
SatI GCNGC 3 cut(s) 5, 151, 216
Sau3AI GATC 2 cut(s) 70, 108
ScrFI CCNGG 1 cut(s) 128
SetI ASST 3 cut(s) 19, 147, 155
Sfr274I CTCGAG 2 cut(s) 21, 114
SlaI CTCGAG 2 cut(s) 21, 114
SmlI CTYRAG 2 cut(s) 21, 114
SmoI CTYRAG 2 cut(s) 21, 114
Sse9I AATT 1 cut(s) 244
SsiI CCGC 3 cut(s) 5, 188, 215
SspMI CTAG 2 cut(s) 8, 68
StyD4I CCNGG 1 cut(s) 126
TaaI ACNGT 2 cut(s) 55, 184
TaiI ACGT 1 cut(s) 19
TaqI TCGA 4 cut(s) 22, 73, 115, 209
TasI AATT 1 cut(s) 244
TauI GCSGC 2 cut(s) 7, 218
TfiI GAWTC 1 cut(s) 119
TseI GCWGC 1 cut(s) 150
TspDTI ATGAA 1 cut(s) 145
Tth111I GACNNNGTC 1 cut(s) 78
XapI RAATTY 1 cut(s) 244
XhoI CTCGAG 2 cut(s) 21, 114
XspI CTAG 2 cut(s) 8, 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.