RchiOBHm_Chr7g0202881

Aminoacyl-tRNA editing domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002840
Physical Location & Seq
Forward (+)
20536189 .. 20540565
4377 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18158

Sequence Viewer

Length: 705 bp
ATGGGAGACTCGCACTCCCTAGCAGAGCTGGAGCGAATCCAAACCCAAATCCTCCAACGCATTTCAAGCCTCGAGATCTCCTCCGCCTCTCTTCTTCCCCAACCCATCCCCACCCCCACCCCGACTCAAAACGACGCCGTCCACGACGACACCGAAGCTCGCCTCTCCGCGATTCTCAAATCCAAAGGCGTCAACGACTTCTCCTTCAAGACAGTCGCCTCCGATTACTACGACTGGCCTCTCGAAGCCCGACGCGACGCCGTCGGAGCCGCCTCCATCCACCATCTCTGCAAAACCATTGTTCTGGTTAACACTCAAGCTCCACCTAGTGTGGTTGATTGTAGTGACCGCAACAATTCAAAGTATTATCTTGTGGTAGTTCAGTATACTGCTCGGTTTAATGCCGAAGCTGTTAAGAACTTCTTGTATACCCTCAACGAAGGCAAAATCGCCAAAAAGAAGTTCAACTTGAGGCTTGCACCTGAGGAGACTTCAACACAATTGACTGGGTTTGAGCACAATGCAGTTACATGTGTTGGCATGAAAACAGAAATTCCGGTGATTTTGGATGAAGCAATTCAAAAACTTAATCCCGATTTCTTCTGGTTGGGTGGCGGAGAGGTTGATCTGAAGCTGGGCATCAAAACCTCGGAGTTCATAAATGTTGTTAAACCTTTTATTGTGAGCTGTAGTAGTAGCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
tRNA_edit

Protein Analysis

234

Amino Acids

25.83

Weight (kDa)

5.75

Isoelectric Point (pI)

27.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA_edit PF04073 92 - 219 1.7e-09 Aminoacyl-tRNA editing domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 386, 428
AccII CGCG 2 cut(s) 170, 255
AciI CCGC 5 cut(s) 84, 168, 270, 349, 615
AcsI RAATTY 1 cut(s) 552
AcuI CTGAAG 1 cut(s) 650
AcyI GRCGYC 3 cut(s) 135, 189, 258
AdeI CACNNNGTG 1 cut(s) 329
AflIII ACRYGT 1 cut(s) 530
AgsI TTSAA 6 cut(s) 66, 208, 360, 466, 495, 581
AjuI GAANNNNNNNTTGG 2 cut(s) 446, 478
AluBI AGCT 6 cut(s) 28, 158, 320, 410, 634, 687
AluI AGCT 6 cut(s) 28, 158, 320, 410, 634, 687
Alw21I GWGCWC 1 cut(s) 519
Alw26I GTCTC 1 cut(s) 482
Ama87I CYCGRG 1 cut(s) 71
AoxI GGCC 1 cut(s) 236
ApoI RAATTY 1 cut(s) 552
Asp700I GAANNNNTTC 1 cut(s) 576
AsuHPI GGTGA 1 cut(s) 571
AvaI CYCGRG 1 cut(s) 71
AxyI CCTNAGG 1 cut(s) 483
Bbv12I GWGCWC 1 cut(s) 519
BccI CCATC 3 cut(s) 113, 284, 291
BceAI ACGGC 2 cut(s) 122, 245
BcoDI GTCTC 1 cut(s) 482
BfaI CTAG 2 cut(s) 20, 327
BfmI CTRYAG 1 cut(s) 688
BglII AGATCT 1 cut(s) 75
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
BmeT110I CYCGRG 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 268
BmrI ACTGGG 1 cut(s) 516
BmsI GCATC 1 cut(s) 648
BmuI ACTGGG 1 cut(s) 516
BplI GAGNNNNNCTC 2 cut(s) 65, 97
BpmI CTGGAG 1 cut(s) 50
BpuEI CTTGAG 2 cut(s) 300, 490
BsaHI GRCGYC 3 cut(s) 135, 189, 258
BsaJI CCNNGG 1 cut(s) 648
BsaWI WCCGGW 1 cut(s) 556
BsaXI ACNNNNNCTCC 5 cut(s) 29, 185, 215, 304, 334
Bse1I ACTGG 2 cut(s) 239, 511
Bse21I CCTNAGG 1 cut(s) 483
BseDI CCNNGG 1 cut(s) 648
BseGI GGATG 3 cut(s) 105, 276, 574
BseMII CTCAG 1 cut(s) 474
BseNI ACTGG 2 cut(s) 239, 511
BseRI GAGGAG 2 cut(s) 70, 500
BseYI CCCAGC 1 cut(s) 634
Bsh1236I CGCG 2 cut(s) 170, 255
BshFI GGCC 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 519
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 1 cut(s) 557
BsmAI GTCTC 1 cut(s) 482
BsnI GGCC 1 cut(s) 238
BsoBI CYCGRG 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 519
Bsp143I GATC 2 cut(s) 75, 625
BspACI CCGC 5 cut(s) 84, 168, 270, 349, 615
BspANI GGCC 1 cut(s) 238
BspCNI CTCAG 1 cut(s) 475
BspFNI CGCG 2 cut(s) 170, 255
BspLI GGNNCC 1 cut(s) 268
BsrI ACTGG 2 cut(s) 239, 511
BssECI CCNNGG 1 cut(s) 648
BssMI GATC 2 cut(s) 75, 625
BssNAI GTATAC 2 cut(s) 387, 429
BssNI GRCGYC 3 cut(s) 135, 189, 258
Bst1107I GTATAC 2 cut(s) 387, 429
Bst4CI ACNGT 1 cut(s) 214
Bst6I CTCTTC 1 cut(s) 96
BstACI GRCGYC 3 cut(s) 135, 189, 258
BstC8I GCNNGC 2 cut(s) 160, 477
BstDEI CTNAG 1 cut(s) 483
BstF5I GGATG 3 cut(s) 105, 276, 574
BstFNI CGCG 2 cut(s) 170, 255
BstKTI GATC 2 cut(s) 78, 628
BstMAI GTCTC 1 cut(s) 482
BstMBI GATC 2 cut(s) 75, 625
BstMWI GCNNNNNNNGC 2 cut(s) 66, 266
BstNSI RCATGY 1 cut(s) 534
BstSFI CTRYAG 1 cut(s) 688
BstUI CGCG 2 cut(s) 170, 255
BstX2I RGATCY 1 cut(s) 75
BstXI CCANNNNNNTGG 1 cut(s) 304
BstYI RGATCY 1 cut(s) 75
BstZ17I GTATAC 2 cut(s) 387, 429
Bsu36I CCTNAGG 1 cut(s) 483
BsuRI GGCC 1 cut(s) 238
BtsCI GGATG 3 cut(s) 105, 276, 574
Cac8I GCNNGC 2 cut(s) 160, 477
CseI GACGC 4 cut(s) 143, 178, 261, 266
CviAII CATG 2 cut(s) 531, 541
DdeI CTNAG 1 cut(s) 483
DpnI GATC 2 cut(s) 77, 627
DpnII GATC 2 cut(s) 75, 625
DraIII CACNNNGTG 1 cut(s) 329
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
EciI GGCGGA 2 cut(s) 73, 630
Eco57I CTGAAG 1 cut(s) 650
Eco81I CCTNAGG 1 cut(s) 483
Eco88I CYCGRG 1 cut(s) 71
FaeI CATG 2 cut(s) 534, 544
FaiI YATR 5 cut(s) 387, 429, 532, 542, 659
FalI AAGNNNNNCTT 4 cut(s) 407, 439, 452, 484
FatI CATG 2 cut(s) 530, 540
FblI GTMKAC 2 cut(s) 386, 428
Fnu4HI GCNGC 1 cut(s) 270
FokI GGATG 3 cut(s) 92, 263, 581
Fsp4HI GCNGC 1 cut(s) 270
FspBI CTAG 2 cut(s) 20, 327
GluI GCNGC 1 cut(s) 270
GsaI CCCAGC 1 cut(s) 638
GsuI CTGGAG 1 cut(s) 50
HaeIII GGCC 1 cut(s) 238
HapII CCGG 1 cut(s) 557
HgaI GACGC 4 cut(s) 143, 178, 261, 266
Hin1I GRCGYC 3 cut(s) 135, 189, 258
Hin1II CATG 2 cut(s) 534, 544
HincII GTYRAC 2 cut(s) 193, 310
HindII GTYRAC 2 cut(s) 193, 310
HinfI GANTC 4 cut(s) 8, 36, 124, 172
HpaI GTTAAC 1 cut(s) 310
HpaII CCGG 1 cut(s) 557
HphI GGTGA 1 cut(s) 571
Hpy166II GTNNAC 5 cut(s) 142, 193, 310, 387, 429
Hpy188I TCNGA 4 cut(s) 223, 266, 630, 652
Hpy188III TCNNGA 4 cut(s) 73, 208, 242, 593
Hpy8I GTNNAC 5 cut(s) 142, 193, 310, 387, 429
Hpy99I CGWCG 5 cut(s) 137, 149, 255, 260, 266
HpyAV CCTTC 2 cut(s) 214, 434
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4V TGCA 3 cut(s) 291, 479, 524
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 266
HpyF3I CTNAG 1 cut(s) 483
Hsp92I GRCGYC 3 cut(s) 135, 189, 258
Hsp92II CATG 2 cut(s) 534, 544
KspAI GTTAAC 1 cut(s) 310
Kzo9I GATC 2 cut(s) 75, 625
LmnI GCTCC 3 cut(s) 31, 266, 325
LpnPI CCDG 8 cut(s) 14, 220, 290, 492, 495, 570, 589, 620
LweI GCATC 1 cut(s) 648
MaeI CTAG 2 cut(s) 20, 327
MaeIII GTNAC 2 cut(s) 344, 526
MalI GATC 2 cut(s) 77, 627
MboI GATC 2 cut(s) 75, 625
MboII GAAGA 3 cut(s) 83, 86, 592
MfeI CAATTG 1 cut(s) 500
MflI RGATCY 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 519
MluCI AATT 4 cut(s) 355, 500, 552, 576
MlyI GAGTC 2 cut(s) 2, 118
MmeI TCCRAC 2 cut(s) 79, 244
MroXI GAANNNNTTC 1 cut(s) 576
MseI TTAA 5 cut(s) 309, 399, 414, 588, 669
MspI CCGG 1 cut(s) 557
MunI CAATTG 1 cut(s) 500
MvnI CGCG 2 cut(s) 170, 255
MwoI GCNNNNNNNGC 2 cut(s) 66, 266
NdeII GATC 2 cut(s) 75, 625
NlaIII CATG 2 cut(s) 534, 544
NlaIV GGNNCC 1 cut(s) 268
NmuCI GTSAC 1 cut(s) 344
NspI RCATGY 1 cut(s) 534
PaeR7I CTCGAG 1 cut(s) 71
PciI ACATGT 1 cut(s) 530
PcsI WCGNNNNNNNCGW 2 cut(s) 141, 150
PdmI GAANNNNTTC 1 cut(s) 576
PfeI GAWTC 2 cut(s) 36, 172
PflFI GACNNNGTC 2 cut(s) 137, 260
PkrI GCNGC 1 cut(s) 271
PleI GAGTC 2 cut(s) 2, 118
PpsI GAGTC 2 cut(s) 2, 118
PscI ACATGT 1 cut(s) 530
PspFI CCCAGC 1 cut(s) 634
PspN4I GGNNCC 1 cut(s) 268
PsuI RGATCY 1 cut(s) 75
PsyI GACNNNGTC 2 cut(s) 137, 260
SaqAI TTAA 5 cut(s) 309, 399, 414, 588, 669
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 2 cut(s) 75, 625
SchI GAGTC 2 cut(s) 2, 118
SduI GDGCHC 1 cut(s) 519
SfaNI GCATC 1 cut(s) 648
SfcI CTRYAG 1 cut(s) 688
Sfr274I CTCGAG 1 cut(s) 71
SlaI CTCGAG 1 cut(s) 71
SmlI CTYRAG 3 cut(s) 71, 315, 469
SmoI CTYRAG 3 cut(s) 71, 315, 469
Sse9I AATT 4 cut(s) 355, 500, 552, 576
SsiI CCGC 5 cut(s) 84, 168, 270, 349, 615
SspMI CTAG 2 cut(s) 20, 327
TaaI ACNGT 1 cut(s) 214
TaqI TCGA 2 cut(s) 72, 243
TasI AATT 4 cut(s) 355, 500, 552, 576
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 2 cut(s) 36, 172
Tru1I TTAA 5 cut(s) 309, 399, 414, 588, 669
Tru9I TTAA 5 cut(s) 309, 399, 414, 588, 669
TseFI GTSAC 1 cut(s) 344
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 3 cut(s) 557, 585, 646
Tth111I GACNNNGTC 2 cut(s) 137, 260
XapI RAATTY 1 cut(s) 552
XceI RCATGY 1 cut(s) 534
XhoI CTCGAG 1 cut(s) 71
XmiI GTMKAC 2 cut(s) 386, 428
XmnI GAANNNNTTC 1 cut(s) 576
XspI CTAG 2 cut(s) 20, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.