Rw7G017610

Aminoacyl-tRNA editing domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0002840
Physical Location & Seq
Forward (+)
18610060 .. 18614294
4235 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G017610.1

Sequence Viewer

Length: 705 bp
ATGGGAGACTCGCACTCCCTAGCAGAGCTGGAGCGAATCCAAACCCAAATCCTCCAACGCATTTCAAGCCTCGAGATCTCCTCCGCCTCTCTTCTTCCCCAACCCATCCCCACCCCCACCCCAACTCAAAACGACGCCGTCCACGACGACACCGAAGCTCGCCTCTCCGCGATTCTCAAATCCAAAGGCGTCAACGACTTCTCCTTCAAGACAGTCGCCTCCGATTACTACGATTGGCCTCTCGAAGCCCGACGCGACGCCGTCGGAGCCGCCTCCGTCCACCATCTCTGCAAAACCATTGTTCTGGTTAACACTCAAGCTCCACCTAGTGTGGTTGATTGTAGTGACCGCAACAACTCAAAGTATTATCTTGTGGTAGTTCAGTATACTGCTCGGTTTAATGCCGAAGCTGTTAAGAACTTCTTGTATACCCTCAACGAAGGCAAAATTGCCAAAAAGAAGTTCAACTTGAGGCTTGCACCTGAGGAGACTTCAACGCAATTGACTGGGTTTGAGCACAATGCGGTTACATGTGTTGGCATGAAAACAGAAATTCCGGTGATTTTGGATGAAGCAATTCAAAAACTTAATCCCGATTTCTTCTGGTTGGGTGGCGGAGAGGTTGATCTGAAGCTGGGCATCAAAACCTCGGAGTTCATAAATGTTGTTAAACCTTTTATTGTGAGCTGTAGTAGTAGCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
tRNA_edit

Protein Analysis

234

Amino Acids

25.82

Weight (kDa)

5.75

Isoelectric Point (pI)

26.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA_edit PF04073 92 - 219 1.7e-09 Aminoacyl-tRNA editing domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 386, 428
AccII CGCG 2 cut(s) 170, 255
AciI CCGC 6 cut(s) 84, 168, 270, 349, 524, 615
AcsI RAATTY 1 cut(s) 552
AcuI CTGAAG 1 cut(s) 650
AcyI GRCGYC 3 cut(s) 135, 189, 258
AdeI CACNNNGTG 1 cut(s) 329
AflIII ACRYGT 1 cut(s) 530
AgsI TTSAA 5 cut(s) 66, 208, 466, 495, 581
AjuI GAANNNNNNNTTGG 2 cut(s) 446, 478
AluBI AGCT 6 cut(s) 28, 158, 320, 410, 634, 687
AluI AGCT 6 cut(s) 28, 158, 320, 410, 634, 687
Alw21I GWGCWC 1 cut(s) 519
Alw26I GTCTC 1 cut(s) 482
Ama87I CYCGRG 1 cut(s) 71
AoxI GGCC 1 cut(s) 236
ApoI RAATTY 1 cut(s) 552
Asp700I GAANNNNTTC 1 cut(s) 576
AsuHPI GGTGA 1 cut(s) 571
AvaI CYCGRG 1 cut(s) 71
AxyI CCTNAGG 1 cut(s) 483
Bbv12I GWGCWC 1 cut(s) 519
BccI CCATC 2 cut(s) 113, 291
BceAI ACGGC 2 cut(s) 122, 245
BcoDI GTCTC 1 cut(s) 482
BfaI CTAG 2 cut(s) 20, 327
BfmI CTRYAG 1 cut(s) 688
BglII AGATCT 1 cut(s) 75
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
BmeT110I CYCGRG 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 268
BmrI ACTGGG 1 cut(s) 516
BmsI GCATC 1 cut(s) 648
BmuI ACTGGG 1 cut(s) 516
BplI GAGNNNNNCTC 2 cut(s) 65, 97
BpmI CTGGAG 1 cut(s) 50
BpuEI CTTGAG 2 cut(s) 300, 490
BsaHI GRCGYC 3 cut(s) 135, 189, 258
BsaJI CCNNGG 1 cut(s) 648
BsaWI WCCGGW 1 cut(s) 556
BsaXI ACNNNNNCTCC 5 cut(s) 29, 185, 215, 304, 334
Bse1I ACTGG 1 cut(s) 511
Bse21I CCTNAGG 1 cut(s) 483
BseDI CCNNGG 1 cut(s) 648
BseGI GGATG 2 cut(s) 105, 574
BseMII CTCAG 1 cut(s) 474
BseNI ACTGG 1 cut(s) 511
BseRI GAGGAG 2 cut(s) 70, 500
BseYI CCCAGC 1 cut(s) 634
Bsh1236I CGCG 2 cut(s) 170, 255
BshFI GGCC 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 519
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 1 cut(s) 557
BsmAI GTCTC 1 cut(s) 482
BsnI GGCC 1 cut(s) 238
BsoBI CYCGRG 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 519
Bsp143I GATC 2 cut(s) 75, 625
BspACI CCGC 6 cut(s) 84, 168, 270, 349, 524, 615
BspANI GGCC 1 cut(s) 238
BspCNI CTCAG 1 cut(s) 475
BspFNI CGCG 2 cut(s) 170, 255
BspLI GGNNCC 1 cut(s) 268
BsrI ACTGG 1 cut(s) 511
BssECI CCNNGG 1 cut(s) 648
BssMI GATC 2 cut(s) 75, 625
BssNAI GTATAC 2 cut(s) 387, 429
BssNI GRCGYC 3 cut(s) 135, 189, 258
Bst1107I GTATAC 2 cut(s) 387, 429
Bst4CI ACNGT 1 cut(s) 214
Bst6I CTCTTC 1 cut(s) 96
BstACI GRCGYC 3 cut(s) 135, 189, 258
BstC8I GCNNGC 2 cut(s) 160, 477
BstDEI CTNAG 1 cut(s) 483
BstF5I GGATG 2 cut(s) 105, 574
BstFNI CGCG 2 cut(s) 170, 255
BstKTI GATC 2 cut(s) 78, 628
BstMAI GTCTC 1 cut(s) 482
BstMBI GATC 2 cut(s) 75, 625
BstMWI GCNNNNNNNGC 2 cut(s) 66, 266
BstNSI RCATGY 1 cut(s) 534
BstSFI CTRYAG 1 cut(s) 688
BstUI CGCG 2 cut(s) 170, 255
BstX2I RGATCY 1 cut(s) 75
BstXI CCANNNNNNTGG 1 cut(s) 304
BstYI RGATCY 1 cut(s) 75
BstZ17I GTATAC 2 cut(s) 387, 429
Bsu36I CCTNAGG 1 cut(s) 483
BsuRI GGCC 1 cut(s) 238
BtsCI GGATG 2 cut(s) 105, 574
Cac8I GCNNGC 2 cut(s) 160, 477
CseI GACGC 4 cut(s) 143, 178, 261, 266
CviAII CATG 2 cut(s) 531, 541
DdeI CTNAG 1 cut(s) 483
DpnI GATC 2 cut(s) 77, 627
DpnII GATC 2 cut(s) 75, 625
DraIII CACNNNGTG 1 cut(s) 329
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
EciI GGCGGA 2 cut(s) 73, 630
Eco57I CTGAAG 1 cut(s) 650
Eco81I CCTNAGG 1 cut(s) 483
Eco88I CYCGRG 1 cut(s) 71
FaeI CATG 2 cut(s) 534, 544
FaiI YATR 5 cut(s) 387, 429, 532, 542, 659
FalI AAGNNNNNCTT 4 cut(s) 407, 439, 452, 484
FatI CATG 2 cut(s) 530, 540
FblI GTMKAC 2 cut(s) 386, 428
Fnu4HI GCNGC 1 cut(s) 270
FokI GGATG 2 cut(s) 92, 581
Fsp4HI GCNGC 1 cut(s) 270
FspBI CTAG 2 cut(s) 20, 327
GluI GCNGC 1 cut(s) 270
GsaI CCCAGC 1 cut(s) 638
GsuI CTGGAG 1 cut(s) 50
HaeIII GGCC 1 cut(s) 238
HapII CCGG 1 cut(s) 557
HgaI GACGC 4 cut(s) 143, 178, 261, 266
Hin1I GRCGYC 3 cut(s) 135, 189, 258
Hin1II CATG 2 cut(s) 534, 544
HincII GTYRAC 2 cut(s) 193, 310
HindII GTYRAC 2 cut(s) 193, 310
HinfI GANTC 3 cut(s) 8, 36, 172
HpaI GTTAAC 1 cut(s) 310
HpaII CCGG 1 cut(s) 557
HphI GGTGA 1 cut(s) 571
Hpy166II GTNNAC 6 cut(s) 142, 193, 280, 310, 387, 429
Hpy188I TCNGA 4 cut(s) 223, 266, 630, 652
Hpy188III TCNNGA 4 cut(s) 73, 208, 242, 593
Hpy8I GTNNAC 6 cut(s) 142, 193, 280, 310, 387, 429
Hpy99I CGWCG 5 cut(s) 137, 149, 255, 260, 266
HpyAV CCTTC 2 cut(s) 214, 434
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4V TGCA 2 cut(s) 291, 479
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 266
HpyF3I CTNAG 1 cut(s) 483
Hsp92I GRCGYC 3 cut(s) 135, 189, 258
Hsp92II CATG 2 cut(s) 534, 544
KspAI GTTAAC 1 cut(s) 310
Kzo9I GATC 2 cut(s) 75, 625
LmnI GCTCC 3 cut(s) 31, 266, 325
LpnPI CCDG 7 cut(s) 14, 290, 492, 495, 570, 589, 620
LweI GCATC 1 cut(s) 648
MaeI CTAG 2 cut(s) 20, 327
MaeIII GTNAC 2 cut(s) 344, 526
MalI GATC 2 cut(s) 77, 627
MboI GATC 2 cut(s) 75, 625
MboII GAAGA 3 cut(s) 83, 86, 592
MfeI CAATTG 1 cut(s) 500
MflI RGATCY 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 519
MluCI AATT 4 cut(s) 447, 500, 552, 576
MlyI GAGTC 1 cut(s) 2
MmeI TCCRAC 2 cut(s) 79, 244
MroXI GAANNNNTTC 1 cut(s) 576
MseI TTAA 5 cut(s) 309, 399, 414, 588, 669
MspI CCGG 1 cut(s) 557
MunI CAATTG 1 cut(s) 500
MvnI CGCG 2 cut(s) 170, 255
MwoI GCNNNNNNNGC 2 cut(s) 66, 266
NdeII GATC 2 cut(s) 75, 625
NlaIII CATG 2 cut(s) 534, 544
NlaIV GGNNCC 1 cut(s) 268
NmuCI GTSAC 1 cut(s) 344
NspI RCATGY 1 cut(s) 534
PaeR7I CTCGAG 1 cut(s) 71
PciI ACATGT 1 cut(s) 530
PcsI WCGNNNNNNNCGW 2 cut(s) 141, 150
PdmI GAANNNNTTC 1 cut(s) 576
PfeI GAWTC 2 cut(s) 36, 172
PflFI GACNNNGTC 2 cut(s) 137, 260
PkrI GCNGC 1 cut(s) 271
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
PscI ACATGT 1 cut(s) 530
PspFI CCCAGC 1 cut(s) 634
PspN4I GGNNCC 1 cut(s) 268
PsuI RGATCY 1 cut(s) 75
PsyI GACNNNGTC 2 cut(s) 137, 260
SaqAI TTAA 5 cut(s) 309, 399, 414, 588, 669
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 2 cut(s) 75, 625
SchI GAGTC 1 cut(s) 2
SduI GDGCHC 1 cut(s) 519
SfaNI GCATC 1 cut(s) 648
SfcI CTRYAG 1 cut(s) 688
Sfr274I CTCGAG 1 cut(s) 71
SlaI CTCGAG 1 cut(s) 71
SmlI CTYRAG 3 cut(s) 71, 315, 469
SmoI CTYRAG 3 cut(s) 71, 315, 469
Sse9I AATT 4 cut(s) 447, 500, 552, 576
SsiI CCGC 6 cut(s) 84, 168, 270, 349, 524, 615
SspMI CTAG 2 cut(s) 20, 327
TaaI ACNGT 1 cut(s) 214
TaqI TCGA 2 cut(s) 72, 243
TasI AATT 4 cut(s) 447, 500, 552, 576
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 2 cut(s) 36, 172
Tru1I TTAA 5 cut(s) 309, 399, 414, 588, 669
Tru9I TTAA 5 cut(s) 309, 399, 414, 588, 669
TseFI GTSAC 1 cut(s) 344
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 3 cut(s) 557, 585, 646
TspGWI ACGGA 1 cut(s) 265
Tth111I GACNNNGTC 2 cut(s) 137, 260
XapI RAATTY 1 cut(s) 552
XceI RCATGY 1 cut(s) 534
XhoI CTCGAG 1 cut(s) 71
XmiI GTMKAC 2 cut(s) 386, 428
XmnI GAANNNNTTC 1 cut(s) 576
XspI CTAG 2 cut(s) 20, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.