Rroxscaffold_3G00254210

Aminoacyl-tRNA editing domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0002840
Physical Location & Seq
Reverse (-)
48339113 .. 48343540
4428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00254210.1

Sequence Viewer

Length: 726 bp
ATGGGAGACTCGCACTCCCTAGCAGAGCTGGAGCGAATCCAAACCCAAATCCTCCAACGCATTTCAAGCCTCGAGATCTCCTCCGCCTCTCTTGTTCCCCAACCCATCCCCACCCCCACCCCAACTCAAAACGACGCCGTCCCCGCCGACACCGAAGCTCGCCTCTCCGCGATTCTCAAATCCAAAGGCGTCAACGACTTCTCCTTCAAGACAGTCGCCTCGGATTACTACGATTGGCCTCTCGAAGCCCGACGCGACGCCGTCGGAGCCGCCTCCGTCCACCATCTCTGCAAAACCATTGTTCTGGTTAACACTCAAGCTCCACCTAGTGTGGTTGATTGCAGTGACCGCAACAATTCAAAGTATTATCTTGTGGTAGTTCAGTATACTGCTCGGTTTAATGCCGAAGCTGCTAAGAACTTCTTGTATACCCTCAACGAAGGCAAAATCGCCAAAAAGAAGTTCAACTTGGCTGTGTCTGATTATGCAGTGAGGCTTGCACCTGAGGAGACTTCAACACAATTGACTGGGTTTGAGCACAATGCAGTTACATGTGTTGGCATGAAAACAGAAATTCCGGTGATTTTGGATGAAGCAATTCAAAAACTTAATCCCGATTTCTTCTGGTTGGGTGGCGGAGAGGTTGATCTGAAGCTGGGCATCAAAACCTCGGAGTTCATAAATGTTGTTAAACCTTTTATTGTGAGCTGTAGTAGTAGCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
tRNA_edit

Protein Analysis

241

Amino Acids

26.4

Weight (kDa)

5.62

Isoelectric Point (pI)

27.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA_edit PF04073 151 - 226 8e-07 Aminoacyl-tRNA editing domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 386, 428
AccII CGCG 2 cut(s) 170, 255
AciI CCGC 6 cut(s) 84, 144, 168, 270, 349, 636
AcsI RAATTY 1 cut(s) 573
AcuI CTGAAG 1 cut(s) 671
AcyI GRCGYC 3 cut(s) 135, 189, 258
AdeI CACNNNGTG 1 cut(s) 329
AflIII ACRYGT 1 cut(s) 551
AgsI TTSAA 6 cut(s) 66, 208, 360, 466, 516, 602
AjuI GAANNNNNNNTTGG 4 cut(s) 446, 452, 478, 484
AluBI AGCT 6 cut(s) 28, 158, 320, 410, 655, 708
AluI AGCT 6 cut(s) 28, 158, 320, 410, 655, 708
Alw21I GWGCWC 1 cut(s) 540
Alw26I GTCTC 1 cut(s) 503
Ama87I CYCGRG 1 cut(s) 71
AoxI GGCC 1 cut(s) 236
ApeKI GCWGC 1 cut(s) 410
ApoI RAATTY 1 cut(s) 573
Asp700I GAANNNNTTC 1 cut(s) 597
AsuHPI GGTGA 1 cut(s) 592
AvaI CYCGRG 1 cut(s) 71
AxyI CCTNAGG 1 cut(s) 504
Bbv12I GWGCWC 1 cut(s) 540
BbvI GCAGC 1 cut(s) 397
BccI CCATC 2 cut(s) 113, 291
BceAI ACGGC 2 cut(s) 122, 245
BcoDI GTCTC 1 cut(s) 503
BfaI CTAG 2 cut(s) 20, 327
BfmI CTRYAG 1 cut(s) 709
BglII AGATCT 1 cut(s) 75
BisI GCNGC 2 cut(s) 270, 411
BlsI GCNGC 2 cut(s) 271, 412
BmeT110I CYCGRG 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 268
BmrI ACTGGG 1 cut(s) 537
BmsI GCATC 1 cut(s) 669
BmuI ACTGGG 1 cut(s) 537
BplI GAGNNNNNCTC 2 cut(s) 65, 97
BpmI CTGGAG 1 cut(s) 50
BpuEI CTTGAG 1 cut(s) 300
BsaHI GRCGYC 3 cut(s) 135, 189, 258
BsaJI CCNNGG 2 cut(s) 219, 669
BsaWI WCCGGW 1 cut(s) 577
BsaXI ACNNNNNCTCC 5 cut(s) 29, 185, 215, 304, 334
Bse1I ACTGG 1 cut(s) 532
Bse21I CCTNAGG 1 cut(s) 504
BseDI CCNNGG 2 cut(s) 219, 669
BseGI GGATG 2 cut(s) 105, 595
BseMII CTCAG 1 cut(s) 495
BseNI ACTGG 1 cut(s) 532
BseRI GAGGAG 2 cut(s) 70, 521
BseXI GCAGC 1 cut(s) 397
BseYI CCCAGC 1 cut(s) 655
Bsh1236I CGCG 2 cut(s) 170, 255
BshFI GGCC 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 540
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 1 cut(s) 578
BslFI GGGAC 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 503
BsmFI GGGAC 1 cut(s) 125
BsnI GGCC 1 cut(s) 238
BsoBI CYCGRG 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 540
Bsp143I GATC 2 cut(s) 75, 646
BspACI CCGC 6 cut(s) 84, 144, 168, 270, 349, 636
BspANI GGCC 1 cut(s) 238
BspCNI CTCAG 1 cut(s) 496
BspFNI CGCG 2 cut(s) 170, 255
BspLI GGNNCC 1 cut(s) 268
BsrI ACTGG 1 cut(s) 532
BssECI CCNNGG 2 cut(s) 219, 669
BssMI GATC 2 cut(s) 75, 646
BssNAI GTATAC 2 cut(s) 387, 429
BssNI GRCGYC 3 cut(s) 135, 189, 258
Bst1107I GTATAC 2 cut(s) 387, 429
Bst4CI ACNGT 1 cut(s) 214
BstACI GRCGYC 3 cut(s) 135, 189, 258
BstC8I GCNNGC 2 cut(s) 160, 498
BstDEI CTNAG 2 cut(s) 414, 504
BstF5I GGATG 2 cut(s) 105, 595
BstFNI CGCG 2 cut(s) 170, 255
BstKTI GATC 2 cut(s) 78, 649
BstMAI GTCTC 1 cut(s) 503
BstMBI GATC 2 cut(s) 75, 646
BstMWI GCNNNNNNNGC 5 cut(s) 66, 143, 266, 348, 410
BstNSI RCATGY 1 cut(s) 555
BstSFI CTRYAG 1 cut(s) 709
BstUI CGCG 2 cut(s) 170, 255
BstV1I GCAGC 1 cut(s) 397
BstX2I RGATCY 1 cut(s) 75
BstXI CCANNNNNNTGG 1 cut(s) 304
BstYI RGATCY 1 cut(s) 75
BstZ17I GTATAC 2 cut(s) 387, 429
Bsu36I CCTNAGG 1 cut(s) 504
BsuRI GGCC 1 cut(s) 238
BtsCI GGATG 2 cut(s) 105, 595
BtsI GCAGTG 2 cut(s) 349, 495
BtsIMutI CAGTG 2 cut(s) 349, 495
Cac8I GCNNGC 2 cut(s) 160, 498
CseI GACGC 4 cut(s) 143, 178, 261, 266
CviAII CATG 2 cut(s) 552, 562
DdeI CTNAG 2 cut(s) 414, 504
DpnI GATC 2 cut(s) 77, 648
DpnII GATC 2 cut(s) 75, 646
DraIII CACNNNGTG 1 cut(s) 329
EciI GGCGGA 2 cut(s) 73, 651
Eco57I CTGAAG 1 cut(s) 671
Eco81I CCTNAGG 1 cut(s) 504
Eco88I CYCGRG 1 cut(s) 71
FaeI CATG 2 cut(s) 555, 565
FaiI YATR 6 cut(s) 387, 429, 486, 553, 563, 680
FalI AAGNNNNNCTT 4 cut(s) 407, 439, 452, 484
FaqI GGGAC 1 cut(s) 125
FatI CATG 2 cut(s) 551, 561
FauI CCCGC 1 cut(s) 151
FblI GTMKAC 2 cut(s) 386, 428
Fnu4HI GCNGC 2 cut(s) 270, 411
FokI GGATG 2 cut(s) 92, 602
Fsp4HI GCNGC 2 cut(s) 270, 411
FspBI CTAG 2 cut(s) 20, 327
GluI GCNGC 2 cut(s) 270, 411
GsaI CCCAGC 1 cut(s) 659
GsuI CTGGAG 1 cut(s) 50
HaeIII GGCC 1 cut(s) 238
HapII CCGG 1 cut(s) 578
HgaI GACGC 4 cut(s) 143, 178, 261, 266
Hin1I GRCGYC 3 cut(s) 135, 189, 258
Hin1II CATG 2 cut(s) 555, 565
HincII GTYRAC 2 cut(s) 193, 310
HindII GTYRAC 2 cut(s) 193, 310
HinfI GANTC 3 cut(s) 8, 36, 172
HpaI GTTAAC 1 cut(s) 310
HpaII CCGG 1 cut(s) 578
HphI GGTGA 1 cut(s) 592
Hpy166II GTNNAC 5 cut(s) 193, 280, 310, 387, 429
Hpy188I TCNGA 5 cut(s) 223, 266, 481, 651, 673
Hpy188III TCNNGA 4 cut(s) 73, 208, 242, 614
Hpy8I GTNNAC 5 cut(s) 193, 280, 310, 387, 429
Hpy99I CGWCG 4 cut(s) 137, 255, 260, 266
HpyAV CCTTC 2 cut(s) 214, 434
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4V TGCA 5 cut(s) 291, 342, 488, 500, 545
HpyF10VI GCNNNNNNNGC 5 cut(s) 66, 143, 266, 348, 410
HpyF3I CTNAG 2 cut(s) 414, 504
Hsp92I GRCGYC 3 cut(s) 135, 189, 258
Hsp92II CATG 2 cut(s) 555, 565
KspAI GTTAAC 1 cut(s) 310
Kzo9I GATC 2 cut(s) 75, 646
LmnI GCTCC 3 cut(s) 31, 266, 325
LpnPI CCDG 7 cut(s) 14, 290, 513, 516, 591, 610, 641
Lsp1109I GCAGC 1 cut(s) 397
LweI GCATC 1 cut(s) 669
MaeI CTAG 2 cut(s) 20, 327
MaeIII GTNAC 2 cut(s) 344, 547
MalI GATC 2 cut(s) 77, 648
MboI GATC 2 cut(s) 75, 646
MboII GAAGA 1 cut(s) 613
MfeI CAATTG 1 cut(s) 521
MflI RGATCY 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 540
MluCI AATT 4 cut(s) 355, 521, 573, 597
MlyI GAGTC 1 cut(s) 2
MmeI TCCRAC 2 cut(s) 79, 244
MroXI GAANNNNTTC 1 cut(s) 597
MseI TTAA 4 cut(s) 309, 399, 609, 690
MspI CCGG 1 cut(s) 578
MunI CAATTG 1 cut(s) 521
MvnI CGCG 2 cut(s) 170, 255
MwoI GCNNNNNNNGC 5 cut(s) 66, 143, 266, 348, 410
NdeII GATC 2 cut(s) 75, 646
NlaIII CATG 2 cut(s) 555, 565
NlaIV GGNNCC 1 cut(s) 268
NmuCI GTSAC 1 cut(s) 344
NspI RCATGY 1 cut(s) 555
PaeR7I CTCGAG 1 cut(s) 71
PciI ACATGT 1 cut(s) 551
PdmI GAANNNNTTC 1 cut(s) 597
PfeI GAWTC 2 cut(s) 36, 172
PflFI GACNNNGTC 2 cut(s) 137, 260
PkrI GCNGC 2 cut(s) 271, 412
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
PscI ACATGT 1 cut(s) 551
PspFI CCCAGC 1 cut(s) 655
PspN4I GGNNCC 1 cut(s) 268
PsuI RGATCY 1 cut(s) 75
PsyI GACNNNGTC 2 cut(s) 137, 260
SaqAI TTAA 4 cut(s) 309, 399, 609, 690
SatI GCNGC 2 cut(s) 270, 411
Sau3AI GATC 2 cut(s) 75, 646
SchI GAGTC 1 cut(s) 2
SduI GDGCHC 1 cut(s) 540
SfaNI GCATC 1 cut(s) 669
SfcI CTRYAG 1 cut(s) 709
Sfr274I CTCGAG 1 cut(s) 71
SlaI CTCGAG 1 cut(s) 71
SmlI CTYRAG 2 cut(s) 71, 315
SmoI CTYRAG 2 cut(s) 71, 315
Sse9I AATT 4 cut(s) 355, 521, 573, 597
SsiI CCGC 6 cut(s) 84, 144, 168, 270, 349, 636
SspMI CTAG 2 cut(s) 20, 327
TaaI ACNGT 1 cut(s) 214
TaqI TCGA 2 cut(s) 72, 243
TasI AATT 4 cut(s) 355, 521, 573, 597
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 2 cut(s) 36, 172
Tru1I TTAA 4 cut(s) 309, 399, 609, 690
Tru9I TTAA 4 cut(s) 309, 399, 609, 690
TscAI CASTG 2 cut(s) 349, 495
TseFI GTSAC 1 cut(s) 344
TseI GCWGC 1 cut(s) 410
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 3 cut(s) 578, 606, 667
TspGWI ACGGA 1 cut(s) 265
TspRI CASTG 2 cut(s) 349, 495
Tth111I GACNNNGTC 2 cut(s) 137, 260
XapI RAATTY 1 cut(s) 573
XceI RCATGY 1 cut(s) 555
XhoI CTCGAG 1 cut(s) 71
XmiI GTMKAC 2 cut(s) 386, 428
XmnI GAANNNNTTC 1 cut(s) 597
XspI CTAG 2 cut(s) 20, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.