Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002840

Physical Location & Seq

Genomic Coordinates Forward (+)

28738290 .. 28739046

Gene Structure 757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g38900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTCGTTGAAGCAAGTCCTTTCGGGTCTAGATCTCCAGCTTGAGAGTCGGAGGAGTGTGATCTTGTTCGGGCTTCTAGTCCCAGTGCCCACGTCTTTGTTTGCGGTTTGTTTTTCCTTCCCGTTCACAAAAACATCTACATCCATGGCTGCCAAAGTTCTCATTTCAATCCTCCCATCTCTTCTCTTCTCTCTTTTTTTCAACCCATTCCACCTCAATCCCCAAAACCTTCCTCTCTCCTCTGCTAGTTGTAGTAAGCTCCACCCCTCTGTTGCCGCTAGAGTAACGTCCCCGAAACCGGCTTTGAACGGTGTTTTGGATGCTAGAACGACCCTGTCTTTTTCAAAGACAGATGAGTGGGGAGATTCCTCGAGATTCCACCATGGGTGCCGGTGCGAAGGTTCGCAGCTTCAAGGCAGCAAGCAAAGAAAAGAGGACGGCGCGGATCCACTGCAAAAAACCCCTTCGACGACGGCGGCTGTTTTTCCAACAGAGTTGGTGATGCATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

171

Amino Acids

18.46

Weight (kDa)

9.27

Isoelectric Point (pI)

56.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16510 AT4G16510
fragaria_vesca	FvH4_2g25460 FvH4_3g26313 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g26851 FvH4_5g38900 FvH4_6g19840 FvH4_6g26281 FvH4_7g10800
malus_domestica	MD00G1115100.v1.1 MD06G1061300.v1.1
prunus_persica	Prupe.5G072600_v2.0.a1
pyrus_communis	pycom06g05140
rosa_chinensis	RchiOBHm_Chr1g0333271 RchiOBHm_Chr2g0095921 RchiOBHm_Chr2g0099411 RchiOBHm_Chr7g0202881 RchiOBHm_Chr7g0233531
rosa_laevigata	RLG00000003567 RLG00000033632
rosa_multiflora	Rmu_sc0003729.1_g000007 Rmu_sc0033032.1_g000002
rosa_roxburghii	Rroxscaffold_1G00038270 Rroxscaffold_2G00110700 Rroxscaffold_3G00254210
rosa_rugosa	Rorug07G0073500
rosa_samantha	Rh2DG104700 Rh2DG133400 Rh7AG201300 Rh7BG201700 Rh7CG212800 Rh7DG208300
rosa_wichuraiana	Rw7G017610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	387
AccII	CGCG	1 cut(s)	443
AciI	CCGC	4 cut(s)	104, 276, 443, 476
AclWI	GGATC	2 cut(s)	440, 453
AfiI	CCNNNNNNNGG	1 cut(s)	298
AgsI	TTSAA	6 cut(s)	10, 168, 202, 307, 345, 413
AjiI	CACGTC	1 cut(s)	93
AjuI	GAANNNNNNNTTGG	2 cut(s)	299, 331
AluBI	AGCT	3 cut(s)	40, 259, 409
AluI	AGCT	3 cut(s)	40, 259, 409
AlwI	GGATC	2 cut(s)	440, 453
Ama87I	CYCGRG	1 cut(s)	370
ApeKI	GCWGC	3 cut(s)	149, 406, 417
AspLEI	GCGC	1 cut(s)	443
AsuHPI	GGTGA	1 cut(s)	511
AvaI	CYCGRG	1 cut(s)	370
BaeGI	GKGCMC	1 cut(s)	90
BamHI	GGATCC	1 cut(s)	445
BanI	GGYRCC	1 cut(s)	387
BbvI	GCAGC	3 cut(s)	136, 418, 429
BccI	CCATC	1 cut(s)	184
BceAI	ACGGC	2 cut(s)	454, 489
BfaI	CTAG	5 cut(s)	29, 77, 246, 279, 324
BglII	AGATCT	1 cut(s)	31
BisI	GCNGC	5 cut(s)	150, 276, 407, 418, 477
BlsI	GCNGC	5 cut(s)	151, 277, 408, 419, 478
BmeT110I	CYCGRG	1 cut(s)	370
BmgBI	CACGTC	1 cut(s)	93
BmiI	GGNNCC	2 cut(s)	389, 447
BmrI	ACTGGG	1 cut(s)	77
BmsI	GCATC	2 cut(s)	310, 492
BmuI	ACTGGG	1 cut(s)	77
BpmI	CTGGAG	1 cut(s)	20
BpuEI	CTTGAG	1 cut(s)	62
BsaJI	CCNNGG	2 cut(s)	144, 382
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse118I	RCCGGY	2 cut(s)	298, 390
Bse1I	ACTGG	1 cut(s)	83
BseDI	CCNNGG	2 cut(s)	144, 382
BseGI	GGATG	2 cut(s)	140, 325
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseNI	ACTGG	1 cut(s)	83
BseRI	GAGGAG	2 cut(s)	67, 229
BseSI	GKGCMC	1 cut(s)	90
BseXI	GCAGC	3 cut(s)	136, 418, 429
Bsh1236I	CGCG	1 cut(s)	443
BshNI	GGYRCC	1 cut(s)	387
BsiHKCI	CYCGRG	1 cut(s)	370
BsiSI	CCGG	2 cut(s)	299, 391
BslFI	GGGAC	2 cut(s)	65, 274
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmFI	GGGAC	2 cut(s)	65, 274
BsoBI	CYCGRG	1 cut(s)	370
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	3 cut(s)	31, 60, 445
Bsp19I	CCATGG	2 cut(s)	144, 382
BspACI	CCGC	4 cut(s)	104, 276, 443, 476
BspFNI	CGCG	1 cut(s)	443
BspLI	GGNNCC	2 cut(s)	389, 447
BspPI	GGATC	2 cut(s)	440, 453
BspT107I	GGYRCC	1 cut(s)	387
BsrFI	RCCGGY	2 cut(s)	298, 390
BsrI	ACTGG	1 cut(s)	83
BssAI	RCCGGY	2 cut(s)	298, 390
BssECI	CCNNGG	2 cut(s)	144, 382
BssMI	GATC	3 cut(s)	31, 60, 445
BssT1I	CCWWGG	2 cut(s)	144, 382
Bst4CI	ACNGT	1 cut(s)	311
Bst6I	CTCTTC	2 cut(s)	186, 191
BstC8I	GCNNGC	1 cut(s)	422
BstDSI	CCRYGG	2 cut(s)	144, 382
BstF5I	GGATG	2 cut(s)	140, 325
BstFNI	CGCG	1 cut(s)	443
BstHHI	GCGC	1 cut(s)	443
BstKTI	GATC	3 cut(s)	34, 63, 448
BstMBI	GATC	3 cut(s)	31, 60, 445
BstSLI	GKGCMC	1 cut(s)	90
BstUI	CGCG	1 cut(s)	443
BstV1I	GCAGC	3 cut(s)	136, 418, 429
BstX2I	RGATCY	2 cut(s)	31, 445
BstYI	RGATCY	2 cut(s)	31, 445
BtgI	CCRYGG	2 cut(s)	144, 382
BtrI	CACGTC	1 cut(s)	93
BtsCI	GGATG	2 cut(s)	140, 325
BtsI	GCAGTG	1 cut(s)	449
BtsIMutI	CAGTG	2 cut(s)	90, 449
Cac8I	GCNNGC	1 cut(s)	422
CfoI	GCGC	1 cut(s)	443
Cfr10I	RCCGGY	2 cut(s)	298, 390
CviAII	CATG	2 cut(s)	145, 383
CviJI	RGCY	7 cut(s)	40, 73, 149, 259, 302, 409, 479
CviKI_1	RGCY	7 cut(s)	40, 73, 149, 259, 302, 409, 479
DpnI	GATC	3 cut(s)	33, 62, 447
DpnII	GATC	3 cut(s)	31, 60, 445
Eam1104I	CTCTTC	2 cut(s)	186, 191
EarI	CTCTTC	2 cut(s)	186, 191
Eco130I	CCWWGG	2 cut(s)	144, 382
Eco88I	CYCGRG	1 cut(s)	370
EcoT14I	CCWWGG	2 cut(s)	144, 382
EcoT22I	ATGCAT	1 cut(s)	507
ErhI	CCWWGG	2 cut(s)	144, 382
FaeI	CATG	2 cut(s)	148, 386
FaiI	YATR	2 cut(s)	146, 384
FaqI	GGGAC	2 cut(s)	65, 274
FatI	CATG	2 cut(s)	144, 382
Fnu4HI	GCNGC	5 cut(s)	150, 276, 407, 418, 477
FokI	GGATG	2 cut(s)	127, 332
Fsp4HI	GCNGC	5 cut(s)	150, 276, 407, 418, 477
FspBI	CTAG	5 cut(s)	29, 77, 246, 279, 324
GlaI	GCGC	1 cut(s)	442
GluI	GCNGC	5 cut(s)	150, 276, 407, 418, 477
GsuI	CTGGAG	1 cut(s)	20
HapII	CCGG	2 cut(s)	299, 391
HhaI	GCGC	1 cut(s)	443
Hin1II	CATG	2 cut(s)	148, 386
Hin6I	GCGC	1 cut(s)	441
HinP1I	GCGC	1 cut(s)	441
HinfI	GANTC	3 cut(s)	46, 365, 375
HpaII	CCGG	2 cut(s)	299, 391
HphI	GGTGA	1 cut(s)	511
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188I	TCNGA	1 cut(s)	51
Hpy188III	TCNNGA	2 cut(s)	29, 372
Hpy8I	GTNNAC	1 cut(s)	126
Hpy99I	CGWCG	2 cut(s)	472, 475
HpyAV	CCTTC	4 cut(s)	127, 239, 392, 474
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4IV	ACGT	2 cut(s)	92, 287
HpyCH4V	TGCA	2 cut(s)	454, 505
HpySE526I	ACGT	2 cut(s)	92, 287
Hsp92II	CATG	2 cut(s)	148, 386
HspAI	GCGC	1 cut(s)	441
Kzo9I	GATC	3 cut(s)	31, 60, 445
LmnI	GCTCC	1 cut(s)	264
LpnPI	CCDG	5 cut(s)	50, 96, 312, 347, 404
Lsp1109I	GCAGC	3 cut(s)	136, 418, 429
LweI	GCATC	2 cut(s)	310, 492
MaeI	CTAG	5 cut(s)	29, 77, 246, 279, 324
MaeII	ACGT	2 cut(s)	92, 287
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	3 cut(s)	33, 62, 447
MboI	GATC	3 cut(s)	31, 60, 445
MboII	GAAGA	2 cut(s)	173, 178
MflI	RGATCY	2 cut(s)	31, 445
MhlI	GDGCHC	1 cut(s)	90
MlyI	GAGTC	1 cut(s)	55
MmeI	TCCRAC	2 cut(s)	29, 512
MnlI	CCTC	8 cut(s)	45, 182, 224, 243, 250, 277, 379, 427
Mph1103I	ATGCAT	1 cut(s)	507
MspI	CCGG	2 cut(s)	299, 391
MvnI	CGCG	1 cut(s)	443
NcoI	CCATGG	2 cut(s)	144, 382
NdeII	GATC	3 cut(s)	31, 60, 445
NlaIII	CATG	2 cut(s)	148, 386
NlaIV	GGNNCC	2 cut(s)	389, 447
NsiI	ATGCAT	1 cut(s)	507
PaeR7I	CTCGAG	1 cut(s)	370
PfeI	GAWTC	2 cut(s)	365, 375
PflFI	GACNNNGTC	1 cut(s)	334
PkrI	GCNGC	5 cut(s)	151, 277, 408, 419, 478
PleI	GAGTC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	54
PspN4I	GGNNCC	2 cut(s)	389, 447
PsuI	RGATCY	2 cut(s)	31, 445
PsyI	GACNNNGTC	1 cut(s)	334
SatI	GCNGC	5 cut(s)	150, 276, 407, 418, 477
Sau3AI	GATC	3 cut(s)	31, 60, 445
SchI	GAGTC	1 cut(s)	55
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	8 cut(s)	42, 95, 216, 231, 261, 290, 403, 411
SfaNI	GCATC	2 cut(s)	310, 492
Sfr274I	CTCGAG	1 cut(s)	370
SlaI	CTCGAG	1 cut(s)	370
SmlI	CTYRAG	2 cut(s)	41, 370
SmoI	CTYRAG	2 cut(s)	41, 370
SsiI	CCGC	4 cut(s)	104, 276, 443, 476
SspMI	CTAG	5 cut(s)	29, 77, 246, 279, 324
StyI	CCWWGG	2 cut(s)	144, 382
TaaI	ACNGT	1 cut(s)	311
TaiI	ACGT	2 cut(s)	95, 290
TaqI	TCGA	2 cut(s)	371, 467
TauI	GCSGC	2 cut(s)	278, 479
TfiI	GAWTC	2 cut(s)	365, 375
TscAI	CASTG	2 cut(s)	90, 456
TseI	GCWGC	3 cut(s)	149, 406, 417
TspRI	CASTG	2 cut(s)	90, 456
Tth111I	GACNNNGTC	1 cut(s)	334
XbaI	TCTAGA	1 cut(s)	28
XhoI	CTCGAG	1 cut(s)	370
XspI	CTAG	5 cut(s)	29, 77, 246, 279, 324
Zsp2I	ATGCAT	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.