Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002840

Physical Location & Seq

Genomic Coordinates Forward (+)

35182564 .. 35194262

Gene Structure 11699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00110700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGCCGAAGCCGGAGCCGGAGCCGGAGCCTGAGCCGCAGCTTTTCTTCTTTAATCGCTTCGCAGAGATCCGGCTAAAATCTGGAATCCTCCGTGGCGGTGACGACAACACGAACAGCTTTCTTGAGCTCCACCCCTTCAATGTTGCTAGAAAAACGTCCCCGAGACATGATTACGTGATTTGGACGCTAGATCAACCCCGTCTTTTTCAAAGACAAAGGAGTGGGGAGATCCCTCGATATTCCACCCTGGGTGCCGGGAGCGAAGGTTCACAGCTTCATGGTAGCGAGCATAGGAGAGAAAACGGTGGCGGAACCACTACAACACCCCTTGACGGCGGCGCTGTTCCTTATGGAGATATAAGCGAGACCGATAGCGATAGTAACAGCCAATACATCCCATGTTCGCTAGATCGAACCACTCTCGAGATAACCGAAAGATTTGGCGCTAGAGAAGGACTCCCTCGCTCCATGCCGGGCAGGACAACACATCCATGGCTACCAACATCCCCGATAACGACGATCTACCCCACGAGGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

20.1

Weight (kDa)

5.96

Isoelectric Point (pI)

51.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16510 AT4G16510
fragaria_vesca	FvH4_2g25460 FvH4_3g26313 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g26851 FvH4_5g38900 FvH4_6g19840 FvH4_6g26281 FvH4_7g10800
malus_domestica	MD00G1115100.v1.1 MD06G1061300.v1.1
prunus_persica	Prupe.5G072600_v2.0.a1
pyrus_communis	pycom06g05140
rosa_chinensis	RchiOBHm_Chr1g0333271 RchiOBHm_Chr2g0095921 RchiOBHm_Chr2g0099411 RchiOBHm_Chr7g0202881 RchiOBHm_Chr7g0233531
rosa_laevigata	RLG00000003567 RLG00000033632
rosa_multiflora	Rmu_sc0003729.1_g000007 Rmu_sc0033032.1_g000002
rosa_roxburghii	Rroxscaffold_1G00038270 Rroxscaffold_2G00110700 Rroxscaffold_3G00254210
rosa_rugosa	Rorug07G0073500
rosa_samantha	Rh2DG104700 Rh2DG133400 Rh7AG201300 Rh7BG201700 Rh7CG212800 Rh7DG208300
rosa_wichuraiana	Rw7G017610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	251
AciI	CCGC	4 cut(s)	35, 96, 309, 336
AclWI	GGATC	2 cut(s)	61, 223
AfiI	CCNNNNNNNGG	1 cut(s)	332
AgsI	TTSAA	2 cut(s)	139, 209
AjnI	CCWGG	1 cut(s)	246
AloI	GAACNNNNNNTCC	2 cut(s)	250, 282
AluBI	AGCT	4 cut(s)	40, 117, 127, 274
AluI	AGCT	4 cut(s)	40, 117, 127, 274
Alw21I	GWGCWC	1 cut(s)	129
Alw26I	GTCTC	2 cut(s)	157, 359
AlwI	GGATC	2 cut(s)	61, 223
Ama87I	CYCGRG	2 cut(s)	160, 422
ApeKI	GCWGC	1 cut(s)	37
AspLEI	GCGC	2 cut(s)	341, 446
AsuC2I	CCSGG	2 cut(s)	256, 474
AsuHPI	GGTGA	1 cut(s)	110
AvaI	CYCGRG	2 cut(s)	160, 422
BanI	GGYRCC	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	129
BauI	CACGAG	1 cut(s)	529
Bbv12I	GWGCWC	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	49
BceAI	ACGGC	1 cut(s)	349
BciT130I	CCWGG	1 cut(s)	248
BcnI	CCSGG	2 cut(s)	256, 474
BcoDI	GTCTC	2 cut(s)	157, 359
BfaI	CTAG	4 cut(s)	147, 188, 407, 447
BfoI	RGCGCY	2 cut(s)	342, 447
BisI	GCNGC	3 cut(s)	35, 38, 337
BlsI	GCNGC	3 cut(s)	36, 39, 338
Bme1390I	CCNGG	3 cut(s)	248, 256, 474
BmeT110I	CYCGRG	2 cut(s)	160, 422
BmiI	GGNNCC	5 cut(s)	15, 21, 27, 253, 313
BmrFI	CCNGG	3 cut(s)	248, 256, 474
BplI	GAGNNNNNCTC	2 cut(s)	441, 473
Bpu10I	CCTNAGC	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	143
BpuMI	CCSGG	2 cut(s)	256, 474
BsaAI	YACGTR	1 cut(s)	175
BsaI	GGTCTC	1 cut(s)	359
BsaJI	CCNNGG	4 cut(s)	91, 246, 247, 491
BsaXI	ACNNNNNCTCC	2 cut(s)	250, 280
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
BseBI	CCWGG	1 cut(s)	248
BseDI	CCNNGG	4 cut(s)	91, 246, 247, 491
BseGI	GGATG	3 cut(s)	393, 487, 503
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseMII	CTCAG	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	49
BshNI	GGYRCC	1 cut(s)	251
BsiHKAI	GWGCWC	1 cut(s)	129
BsiHKCI	CYCGRG	2 cut(s)	160, 422
BsiSI	CCGG	6 cut(s)	11, 17, 23, 70, 255, 473
BslFI	GGGAC	1 cut(s)	142
BslI	CCNNNNNNNGG	1 cut(s)	332
BsmAI	GTCTC	2 cut(s)	157, 359
BsmFI	GGGAC	1 cut(s)	142
Bso31I	GGTCTC	1 cut(s)	359
BsoBI	CYCGRG	2 cut(s)	160, 422
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp143I	GATC	5 cut(s)	66, 190, 228, 409, 519
Bsp19I	CCATGG	1 cut(s)	491
BspACI	CCGC	4 cut(s)	35, 96, 309, 336
BspCNI	CTCAG	1 cut(s)	22
BspLI	GGNNCC	5 cut(s)	15, 21, 27, 253, 313
BspPI	GGATC	2 cut(s)	61, 223
BspT107I	GGYRCC	1 cut(s)	251
BspTNI	GGTCTC	1 cut(s)	359
BssECI	CCNNGG	4 cut(s)	91, 246, 247, 491
BssMI	GATC	5 cut(s)	66, 190, 228, 409, 519
BssSI	CACGAG	1 cut(s)	529
BssT1I	CCWWGG	1 cut(s)	491
Bst2BI	CACGAG	1 cut(s)	529
Bst2UI	CCWGG	1 cut(s)	248
Bst4CI	ACNGT	1 cut(s)	305
BstBAI	YACGTR	1 cut(s)	175
BstC8I	GCNNGC	1 cut(s)	287
BstDEI	CTNAG	1 cut(s)	30
BstDSI	CCRYGG	2 cut(s)	91, 491
BstF5I	GGATG	3 cut(s)	393, 487, 503
BstH2I	RGCGCY	2 cut(s)	342, 447
BstHHI	GCGC	2 cut(s)	341, 446
BstKTI	GATC	5 cut(s)	69, 193, 231, 412, 522
BstMAI	GTCTC	2 cut(s)	157, 359
BstMBI	GATC	5 cut(s)	66, 190, 228, 409, 519
BstMWI	GCNNNNNNNGC	1 cut(s)	34
BstNI	CCWGG	1 cut(s)	248
BstSCI	CCNGG	3 cut(s)	246, 254, 472
BstV1I	GCAGC	1 cut(s)	49
BstX2I	RGATCY	2 cut(s)	66, 228
BstYI	RGATCY	2 cut(s)	66, 228
BtgI	CCRYGG	2 cut(s)	91, 491
BtsCI	GGATG	3 cut(s)	393, 487, 503
Cac8I	GCNNGC	1 cut(s)	287
CfoI	GCGC	2 cut(s)	341, 446
CseI	GACGC	1 cut(s)	193
CviAII	CATG	5 cut(s)	167, 278, 399, 469, 492
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	5 cut(s)	68, 192, 230, 411, 521
DpnII	GATC	5 cut(s)	66, 190, 228, 409, 519
EciI	GGCGGA	1 cut(s)	324
Ecl136II	GAGCTC	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	491
Eco24I	GRGCYC	1 cut(s)	129
Eco31I	GGTCTC	1 cut(s)	359
Eco53kI	GAGCTC	1 cut(s)	127
Eco88I	CYCGRG	2 cut(s)	160, 422
EcoICRI	GAGCTC	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	491
EcoT38I	GRGCYC	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	491
FaeI	CATG	5 cut(s)	170, 281, 402, 472, 495
FaiI	YATR	8 cut(s)	168, 279, 291, 351, 359, 400, 470, 493
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	5 cut(s)	166, 277, 398, 468, 491
Fnu4HI	GCNGC	3 cut(s)	35, 38, 337
FokI	GGATG	3 cut(s)	380, 474, 490
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	3 cut(s)	35, 38, 337
FspBI	CTAG	4 cut(s)	147, 188, 407, 447
GlaI	GCGC	2 cut(s)	340, 445
GluI	GCNGC	3 cut(s)	35, 38, 337
HaeII	RGCGCY	2 cut(s)	342, 447
HapII	CCGG	6 cut(s)	11, 17, 23, 70, 255, 473
HgaI	GACGC	1 cut(s)	193
HhaI	GCGC	2 cut(s)	341, 446
Hin1II	CATG	5 cut(s)	170, 281, 402, 472, 495
Hin6I	GCGC	2 cut(s)	339, 444
HinP1I	GCGC	2 cut(s)	339, 444
HinfI	GANTC	2 cut(s)	84, 456
HpaII	CCGG	6 cut(s)	11, 17, 23, 70, 255, 473
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	269
Hpy188III	TCNNGA	4 cut(s)	81, 122, 422, 424
Hpy8I	GTNNAC	1 cut(s)	269
Hpy99I	CGWCG	1 cut(s)	520
HpyAV	CCTTC	3 cut(s)	145, 257, 446
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4IV	ACGT	2 cut(s)	155, 174
HpyF10VI	GCNNNNNNNGC	1 cut(s)	34
HpyF3I	CTNAG	1 cut(s)	30
HpySE526I	ACGT	2 cut(s)	155, 174
Hsp92II	CATG	5 cut(s)	170, 281, 402, 472, 495
HspAI	GCGC	2 cut(s)	339, 444
Kzo9I	GATC	5 cut(s)	66, 190, 228, 409, 519
LmnI	GCTCC	6 cut(s)	13, 19, 25, 132, 258, 470
Lsp1109I	GCAGC	1 cut(s)	49
MaeI	CTAG	4 cut(s)	147, 188, 407, 447
MaeII	ACGT	2 cut(s)	155, 174
MaeIII	GTNAC	2 cut(s)	98, 380
MalI	GATC	5 cut(s)	68, 192, 230, 411, 521
MboI	GATC	5 cut(s)	66, 190, 228, 409, 519
MboII	GAAGA	1 cut(s)	37
MflI	RGATCY	2 cut(s)	66, 228
MhlI	GDGCHC	1 cut(s)	129
MlyI	GAGTC	1 cut(s)	450
MnlI	CCTC	4 cut(s)	98, 243, 471, 525
MseI	TTAA	1 cut(s)	51
MslI	CAYNNNNRTG	1 cut(s)	490
MspI	CCGG	6 cut(s)	11, 17, 23, 70, 255, 473
MspR9I	CCNGG	3 cut(s)	248, 256, 474
MvaI	CCWGG	1 cut(s)	248
MwoI	GCNNNNNNNGC	1 cut(s)	34
NciI	CCSGG	2 cut(s)	256, 474
NcoI	CCATGG	1 cut(s)	491
NdeII	GATC	5 cut(s)	66, 190, 228, 409, 519
NlaIII	CATG	5 cut(s)	170, 281, 402, 472, 495
NlaIV	GGNNCC	5 cut(s)	15, 21, 27, 253, 313
NmuCI	GTSAC	1 cut(s)	98
PaeR7I	CTCGAG	1 cut(s)	422
PasI	CCCWGGG	1 cut(s)	247
PcsI	WCGNNNNNNNCGW	1 cut(s)	429
PfeI	GAWTC	1 cut(s)	84
PkrI	GCNGC	3 cut(s)	36, 39, 338
PleI	GAGTC	1 cut(s)	450
PpsI	GAGTC	1 cut(s)	450
Ppu21I	YACGTR	1 cut(s)	175
Psp124BI	GAGCTC	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	5 cut(s)	15, 21, 27, 253, 313
PsuI	RGATCY	2 cut(s)	66, 228
RseI	CAYNNNNRTG	1 cut(s)	490
SacI	GAGCTC	1 cut(s)	129
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	3 cut(s)	35, 38, 337
Sau3AI	GATC	5 cut(s)	66, 190, 228, 409, 519
SchI	GAGTC	1 cut(s)	450
ScrFI	CCNGG	3 cut(s)	248, 256, 474
SduI	GDGCHC	1 cut(s)	129
SetI	ASST	7 cut(s)	42, 119, 129, 158, 177, 268, 276
Sfr274I	CTCGAG	1 cut(s)	422
SlaI	CTCGAG	1 cut(s)	422
SmiMI	CAYNNNNRTG	1 cut(s)	490
SmlI	CTYRAG	2 cut(s)	122, 422
SmoI	CTYRAG	2 cut(s)	122, 422
SsiI	CCGC	4 cut(s)	35, 96, 309, 336
SspMI	CTAG	4 cut(s)	147, 188, 407, 447
SstI	GAGCTC	1 cut(s)	129
StyD4I	CCNGG	3 cut(s)	246, 254, 472
StyI	CCWWGG	1 cut(s)	491
TaaI	ACNGT	1 cut(s)	305
TaiI	ACGT	2 cut(s)	158, 177
TaqI	TCGA	3 cut(s)	235, 412, 423
TaqII	GACCGA	1 cut(s)	383
TauI	GCSGC	2 cut(s)	37, 339
TfiI	GAWTC	1 cut(s)	84
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	1 cut(s)	37
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	1 cut(s)	266
TspGWI	ACGGA	1 cut(s)	80
XhoI	CTCGAG	1 cut(s)	422
XspI	CTAG	4 cut(s)	147, 188, 407, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.