Rroxscaffold_1G00038270

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002840
Physical Location & Seq
Forward (+)
55704230 .. 55708459
4230 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00038270.1

Sequence Viewer

Length: 345 bp
ATGCGGTGGCTGAAAAGCCGACTACGTTCGGCGGGAGAGAGCATGCTCACCGTCGGTTTTTTTCTTCCTCCTTCGTGCGTGGGGAGCATTCAATTAGGCAAGCGCCACCCCTTTGATGCCGCTAGAGTAACGTCTTTGAGACCTGATCTTGGTGATTTGGACACTAGAATGACCCCGTCTTTTCAAAGACAAAGGATTGGGGAGATCCCTCGAGATTCAACCCCGGGTGCTAGAGTGAAGGTTCACGGCTTCATGGTAGCGGGCAAAGGAGAGAAAATGGTGGCGAAACCACCGCAACACCCCCGACGATGGCACTTTCCCTTATGGAGATGGCGTTGGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

13.2

Weight (kDa)

11.79

Isoelectric Point (pI)

65.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 4, 32, 120, 260, 293
AclWI GGATC 1 cut(s) 199
AfiI CCNNNNNNNGG 2 cut(s) 149, 309
AgsI TTSAA 3 cut(s) 92, 185, 219
Alw26I GTCTC 1 cut(s) 133
AlwI GGATC 1 cut(s) 199
Ama87I CYCGRG 2 cut(s) 210, 223
AspLEI GCGC 1 cut(s) 105
AsuC2I CCSGG 2 cut(s) 224, 225
AsuHPI GGTGA 2 cut(s) 40, 164
AvaI CYCGRG 2 cut(s) 210, 223
BccI CCATC 2 cut(s) 303, 324
BceAI ACGGC 1 cut(s) 262
BcnI CCSGG 2 cut(s) 224, 225
BcoDI GTCTC 1 cut(s) 133
BfaI CTAG 3 cut(s) 123, 165, 231
BfoI RGCGCY 1 cut(s) 106
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 2 cut(s) 224, 225
BmeT110I CYCGRG 2 cut(s) 210, 223
BmrFI CCNGG 2 cut(s) 224, 225
BmsI GCATC 1 cut(s) 106
BpuMI CCSGG 2 cut(s) 224, 225
BsaI GGTCTC 1 cut(s) 133
BsaJI CCNNGG 2 cut(s) 222, 223
BsaXI ACNNNNNCTCC 1 cut(s) 319
Bsc4I CCNNNNNNNGG 2 cut(s) 149, 309
BseDI CCNNGG 2 cut(s) 222, 223
BseLI CCNNNNNNNGG 2 cut(s) 149, 309
BsiHKCI CYCGRG 2 cut(s) 210, 223
BsiSI CCGG 1 cut(s) 224
BslI CCNNNNNNNGG 2 cut(s) 149, 309
BsmAI GTCTC 1 cut(s) 133
BsmI GAATGC 1 cut(s) 87
Bso31I GGTCTC 1 cut(s) 133
BsoBI CYCGRG 2 cut(s) 210, 223
Bsp143I GATC 2 cut(s) 145, 204
BspACI CCGC 5 cut(s) 4, 32, 120, 260, 293
BspPI GGATC 1 cut(s) 199
BspTNI GGTCTC 1 cut(s) 133
BssECI CCNNGG 2 cut(s) 222, 223
BssMI GATC 2 cut(s) 145, 204
Bst4CI ACNGT 1 cut(s) 52
BstC8I GCNNGC 3 cut(s) 44, 101, 262
BstH2I RGCGCY 1 cut(s) 106
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 2 cut(s) 148, 207
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 2 cut(s) 145, 204
BstMWI GCNNNNNNNGC 1 cut(s) 84
BstNSI RCATGY 1 cut(s) 46
BstSCI CCNGG 2 cut(s) 222, 223
BstX2I RGATCY 1 cut(s) 204
BstYI RGATCY 1 cut(s) 204
Cac8I GCNNGC 3 cut(s) 44, 101, 262
CfoI GCGC 1 cut(s) 105
Cfr9I CCCGGG 1 cut(s) 223
CviAII CATG 2 cut(s) 43, 253
CviJI RGCY 3 cut(s) 10, 18, 249
CviKI_1 RGCY 3 cut(s) 10, 18, 249
DpnI GATC 2 cut(s) 147, 206
DpnII GATC 2 cut(s) 145, 204
Eco31I GGTCTC 1 cut(s) 133
Eco88I CYCGRG 2 cut(s) 210, 223
FaeI CATG 2 cut(s) 46, 256
FaiI YATR 3 cut(s) 44, 254, 325
FatI CATG 2 cut(s) 42, 252
FauI CCCGC 2 cut(s) 25, 253
Fnu4HI GCNGC 1 cut(s) 120
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 3 cut(s) 123, 165, 231
GlaI GCGC 1 cut(s) 104
GluI GCNGC 1 cut(s) 120
HaeII RGCGCY 1 cut(s) 106
HapII CCGG 1 cut(s) 224
HhaI GCGC 1 cut(s) 105
Hin1II CATG 2 cut(s) 46, 256
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HinfI GANTC 1 cut(s) 215
HpaII CCGG 1 cut(s) 224
HphI GGTGA 2 cut(s) 40, 164
Hpy166II GTNNAC 1 cut(s) 244
Hpy188III TCNNGA 1 cut(s) 212
Hpy8I GTNNAC 1 cut(s) 244
Hpy99I CGWCG 2 cut(s) 56, 309
HpyAV CCTTC 2 cut(s) 81, 232
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4IV ACGT 2 cut(s) 25, 131
HpyF10VI GCNNNNNNNGC 1 cut(s) 84
HpySE526I ACGT 2 cut(s) 25, 131
Hsp92II CATG 2 cut(s) 46, 256
HspAI GCGC 1 cut(s) 103
Kzo9I GATC 2 cut(s) 145, 204
LmnI GCTCC 1 cut(s) 84
LpnPI CCDG 2 cut(s) 156, 237
LweI GCATC 1 cut(s) 106
MaeI CTAG 3 cut(s) 123, 165, 231
MaeII ACGT 2 cut(s) 25, 131
MaeIII GTNAC 1 cut(s) 127
MalI GATC 2 cut(s) 147, 206
MboI GATC 2 cut(s) 145, 204
MboII GAAGA 1 cut(s) 56
MflI RGATCY 1 cut(s) 204
MluCI AATT 1 cut(s) 92
MnlI CCTC 2 cut(s) 78, 219
MslI CAYNNNNRTG 1 cut(s) 167
MspI CCGG 1 cut(s) 224
MspR9I CCNGG 2 cut(s) 224, 225
Mva1269I GAATGC 1 cut(s) 87
MwoI GCNNNNNNNGC 1 cut(s) 84
NciI CCSGG 2 cut(s) 224, 225
NdeII GATC 2 cut(s) 145, 204
NlaIII CATG 2 cut(s) 46, 256
NspI RCATGY 1 cut(s) 46
PaeI GCATGC 1 cut(s) 46
PaeR7I CTCGAG 1 cut(s) 210
PctI GAATGC 1 cut(s) 87
PfeI GAWTC 1 cut(s) 215
PflFI GACNNNGTC 1 cut(s) 175
PkrI GCNGC 1 cut(s) 121
PsuI RGATCY 1 cut(s) 204
PsyI GACNNNGTC 1 cut(s) 175
RseI CAYNNNNRTG 1 cut(s) 167
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 2 cut(s) 145, 204
ScrFI CCNGG 2 cut(s) 224, 225
SetI ASST 4 cut(s) 28, 134, 145, 243
SfaNI GCATC 1 cut(s) 106
Sfr274I CTCGAG 1 cut(s) 210
SlaI CTCGAG 1 cut(s) 210
SmaI CCCGGG 1 cut(s) 225
SmiMI CAYNNNNRTG 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 210
SmoI CTYRAG 1 cut(s) 210
SphI GCATGC 1 cut(s) 46
Sse9I AATT 1 cut(s) 92
SsiI CCGC 5 cut(s) 4, 32, 120, 260, 293
SspMI CTAG 3 cut(s) 123, 165, 231
StyD4I CCNGG 2 cut(s) 222, 223
TaaI ACNGT 1 cut(s) 52
TaiI ACGT 2 cut(s) 28, 134
TaqI TCGA 1 cut(s) 211
TasI AATT 1 cut(s) 92
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 1 cut(s) 215
TspDTI ATGAA 1 cut(s) 241
TspMI CCCGGG 1 cut(s) 223
Tth111I GACNNNGTC 1 cut(s) 175
XceI RCATGY 1 cut(s) 46
XhoI CTCGAG 1 cut(s) 210
XmaI CCCGGG 1 cut(s) 223
XspI CTAG 3 cut(s) 123, 165, 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.