Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002840

Physical Location & Seq

Genomic Coordinates Forward (+)

19234834 .. 19239393

Gene Structure 4560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG212800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGGAGACTCGCACTCCCTAGCAGAGCTGGAGCGAATCCAAACCCAAATCCTCCAACGCATTTCAAGCCTCGAGATCTCCTCCGCCTCTCTTCTTCCCCAACCCACCCCCACCCCAACTCAAAACGATGCCGTCCACGACGACACCGAAGCTCGCCTCTCCGCGATTCTCAAATCCAAAGGCGTCAACGACTTCTCCTTCAAGACAGTCGCCTCCGATTACTACGATTGGCCTCTCGAAGCCCGACGCGACGCCGTCGGAGCCGCCTCCGTCCACCATCTCTGCAAAACCATTGTTCTGGTTAACACTCAAGCTCCTCCTAGTGTGGTTGATTGTAGTGACCGCAACAACTCAAAGTATTATCTTGTGGTAGTTCAGTATACTGCTCGGTTTAATGCCGAAGCTGTTAAGAACTTGTTGTATACCCTCAACGAAGGCAAAATCGCCAAAAAGAAGTTCAACTTGAGGCTTGCACCTGAGGAGACTTCAACACAATTGACTGGGTTTGAGCACAATGCAGTTACATGTGTTGGCATGAAAACAGAAATTCCGGTGAAGACTTGTTTCTTGTTGTTATTTACTTTATATTTGATATGCTTTGCTCTCATCGAACCAGAGTCATTTTTGCTTGATATGACATTGAAGATTCCCTGCTTTATATTGGCTTTTATGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_edit

Protein Analysis

225

Amino Acids

25.08

Weight (kDa)

5.96

Isoelectric Point (pI)

30.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16510 AT4G16510
fragaria_vesca	FvH4_2g25460 FvH4_3g26313 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g26851 FvH4_5g38900 FvH4_6g19840 FvH4_6g26281 FvH4_7g10800
malus_domestica	MD00G1115100.v1.1 MD06G1061300.v1.1
prunus_persica	Prupe.5G072600_v2.0.a1
pyrus_communis	pycom06g05140
rosa_chinensis	RchiOBHm_Chr1g0333271 RchiOBHm_Chr2g0095921 RchiOBHm_Chr2g0099411 RchiOBHm_Chr7g0202881 RchiOBHm_Chr7g0233531
rosa_laevigata	RLG00000003567 RLG00000033632
rosa_multiflora	Rmu_sc0003729.1_g000007 Rmu_sc0033032.1_g000002
rosa_roxburghii	Rroxscaffold_1G00038270 Rroxscaffold_2G00110700 Rroxscaffold_3G00254210
rosa_rugosa	Rorug07G0073500
rosa_samantha	Rh2DG104700 Rh2DG133400 Rh7AG201300 Rh7BG201700 Rh7CG212800 Rh7DG208300
rosa_wichuraiana	Rw7G017610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	380, 422
AccII	CGCG	2 cut(s)	164, 249
AciI	CCGC	4 cut(s)	84, 162, 264, 343
AcsI	RAATTY	1 cut(s)	546
AcyI	GRCGYC	2 cut(s)	183, 252
AflIII	ACRYGT	1 cut(s)	524
AgsI	TTSAA	5 cut(s)	66, 202, 460, 489, 643
AjuI	GAANNNNNNNTTGG	2 cut(s)	440, 472
AluBI	AGCT	4 cut(s)	28, 152, 314, 404
AluI	AGCT	4 cut(s)	28, 152, 314, 404
Alw21I	GWGCWC	1 cut(s)	513
Alw26I	GTCTC	1 cut(s)	476
Ama87I	CYCGRG	1 cut(s)	71
AoxI	GGCC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	546
AsuHPI	GGTGA	1 cut(s)	565
AvaI	CYCGRG	1 cut(s)	71
AxyI	CCTNAGG	1 cut(s)	477
BbsI	GAAGAC	1 cut(s)	563
Bbv12I	GWGCWC	1 cut(s)	513
BccI	CCATC	1 cut(s)	285
BceAI	ACGGC	2 cut(s)	116, 239
BcoDI	GTCTC	1 cut(s)	476
BfaI	CTAG	2 cut(s)	20, 321
BglII	AGATCT	1 cut(s)	75
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
BmeT110I	CYCGRG	1 cut(s)	71
BmiI	GGNNCC	1 cut(s)	262
BmrI	ACTGGG	1 cut(s)	510
BmsI	GCATC	1 cut(s)	118
BmuI	ACTGGG	1 cut(s)	510
BpiI	GAAGAC	1 cut(s)	563
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
BpmI	CTGGAG	1 cut(s)	50
BpuEI	CTTGAG	2 cut(s)	294, 484
BsaHI	GRCGYC	2 cut(s)	183, 252
BsaWI	WCCGGW	1 cut(s)	550
BsaXI	ACNNNNNCTCC	5 cut(s)	29, 179, 209, 298, 328
Bse1I	ACTGG	1 cut(s)	505
Bse21I	CCTNAGG	1 cut(s)	477
BseMII	CTCAG	1 cut(s)	468
BseNI	ACTGG	1 cut(s)	505
BseRI	GAGGAG	3 cut(s)	70, 306, 494
Bsh1236I	CGCG	2 cut(s)	164, 249
BshFI	GGCC	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	513
BsiHKCI	CYCGRG	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	551
BsmAI	GTCTC	1 cut(s)	476
BsnI	GGCC	1 cut(s)	232
BsoBI	CYCGRG	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	513
Bsp143I	GATC	1 cut(s)	75
BspACI	CCGC	4 cut(s)	84, 162, 264, 343
BspANI	GGCC	1 cut(s)	232
BspCNI	CTCAG	1 cut(s)	469
BspFNI	CGCG	2 cut(s)	164, 249
BspLI	GGNNCC	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	505
BssMI	GATC	1 cut(s)	75
BssNAI	GTATAC	2 cut(s)	381, 423
BssNI	GRCGYC	2 cut(s)	183, 252
Bst1107I	GTATAC	2 cut(s)	381, 423
Bst4CI	ACNGT	1 cut(s)	208
Bst6I	CTCTTC	1 cut(s)	96
BstACI	GRCGYC	2 cut(s)	183, 252
BstC8I	GCNNGC	2 cut(s)	154, 471
BstDEI	CTNAG	1 cut(s)	477
BstFNI	CGCG	2 cut(s)	164, 249
BstKTI	GATC	1 cut(s)	78
BstMAI	GTCTC	1 cut(s)	476
BstMBI	GATC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 260
BstNSI	RCATGY	1 cut(s)	528
BstUI	CGCG	2 cut(s)	164, 249
BstV2I	GAAGAC	1 cut(s)	563
BstX2I	RGATCY	1 cut(s)	75
BstXI	CCANNNNNNTGG	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	75
BstZ17I	GTATAC	2 cut(s)	381, 423
Bsu36I	CCTNAGG	1 cut(s)	477
BsuRI	GGCC	1 cut(s)	232
Cac8I	GCNNGC	2 cut(s)	154, 471
CseI	GACGC	3 cut(s)	172, 255, 260
CviAII	CATG	2 cut(s)	525, 535
DdeI	CTNAG	1 cut(s)	477
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
EciI	GGCGGA	1 cut(s)	73
Eco81I	CCTNAGG	1 cut(s)	477
Eco88I	CYCGRG	1 cut(s)	71
FaeI	CATG	2 cut(s)	528, 538
FaiI	YATR	9 cut(s)	381, 423, 526, 536, 586, 595, 635, 659, 671
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FatI	CATG	2 cut(s)	524, 534
FblI	GTMKAC	2 cut(s)	380, 422
Fnu4HI	GCNGC	1 cut(s)	264
Fsp4HI	GCNGC	1 cut(s)	264
FspBI	CTAG	2 cut(s)	20, 321
GluI	GCNGC	1 cut(s)	264
GsuI	CTGGAG	1 cut(s)	50
HaeIII	GGCC	1 cut(s)	232
HapII	CCGG	1 cut(s)	551
HgaI	GACGC	3 cut(s)	172, 255, 260
Hin1I	GRCGYC	2 cut(s)	183, 252
Hin1II	CATG	2 cut(s)	528, 538
HincII	GTYRAC	2 cut(s)	187, 304
HindII	GTYRAC	2 cut(s)	187, 304
HinfI	GANTC	5 cut(s)	8, 36, 166, 617, 646
HpaI	GTTAAC	1 cut(s)	304
HpaII	CCGG	1 cut(s)	551
HphI	GGTGA	1 cut(s)	565
Hpy166II	GTNNAC	6 cut(s)	136, 187, 274, 304, 381, 423
Hpy188I	TCNGA	2 cut(s)	217, 260
Hpy188III	TCNNGA	4 cut(s)	73, 202, 236, 675
Hpy8I	GTNNAC	6 cut(s)	136, 187, 274, 304, 381, 423
Hpy99I	CGWCG	4 cut(s)	143, 249, 254, 260
HpyAV	CCTTC	2 cut(s)	208, 428
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4V	TGCA	3 cut(s)	285, 473, 518
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 260
HpyF3I	CTNAG	1 cut(s)	477
Hsp92I	GRCGYC	2 cut(s)	183, 252
Hsp92II	CATG	2 cut(s)	528, 538
KspAI	GTTAAC	1 cut(s)	304
Kzo9I	GATC	1 cut(s)	75
LmnI	GCTCC	3 cut(s)	31, 260, 319
LpnPI	CCDG	7 cut(s)	14, 284, 486, 489, 564, 627, 664
LweI	GCATC	1 cut(s)	118
MaeI	CTAG	2 cut(s)	20, 321
MaeIII	GTNAC	2 cut(s)	338, 520
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	4 cut(s)	83, 86, 568, 655
MfeI	CAATTG	1 cut(s)	494
MflI	RGATCY	1 cut(s)	75
MhlI	GDGCHC	1 cut(s)	513
MluCI	AATT	2 cut(s)	494, 546
MlyI	GAGTC	2 cut(s)	2, 626
MmeI	TCCRAC	2 cut(s)	79, 238
MseI	TTAA	3 cut(s)	303, 393, 408
MspI	CCGG	1 cut(s)	551
MunI	CAATTG	1 cut(s)	494
MvnI	CGCG	2 cut(s)	164, 249
MwoI	GCNNNNNNNGC	2 cut(s)	66, 260
NdeII	GATC	1 cut(s)	75
NlaIII	CATG	2 cut(s)	528, 538
NlaIV	GGNNCC	1 cut(s)	262
NmuCI	GTSAC	1 cut(s)	338
NspI	RCATGY	1 cut(s)	528
PaeR7I	CTCGAG	1 cut(s)	71
PciI	ACATGT	1 cut(s)	524
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PfeI	GAWTC	3 cut(s)	36, 166, 646
PflFI	GACNNNGTC	1 cut(s)	254
PkrI	GCNGC	1 cut(s)	265
PleI	GAGTC	2 cut(s)	2, 625
PpsI	GAGTC	2 cut(s)	2, 625
PscI	ACATGT	1 cut(s)	524
PspN4I	GGNNCC	1 cut(s)	262
PsuI	RGATCY	1 cut(s)	75
PsyI	GACNNNGTC	1 cut(s)	254
SaqAI	TTAA	3 cut(s)	303, 393, 408
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	1 cut(s)	75
SchI	GAGTC	2 cut(s)	2, 626
SduI	GDGCHC	1 cut(s)	513
SetI	ASST	5 cut(s)	30, 154, 316, 406, 478
SfaNI	GCATC	1 cut(s)	118
Sfr274I	CTCGAG	1 cut(s)	71
SlaI	CTCGAG	1 cut(s)	71
SmlI	CTYRAG	3 cut(s)	71, 309, 463
SmoI	CTYRAG	3 cut(s)	71, 309, 463
Sse9I	AATT	2 cut(s)	494, 546
SsiI	CCGC	4 cut(s)	84, 162, 264, 343
SspMI	CTAG	2 cut(s)	20, 321
TaaI	ACNGT	1 cut(s)	208
TaqI	TCGA	3 cut(s)	72, 237, 609
TasI	AATT	2 cut(s)	494, 546
TauI	GCSGC	1 cut(s)	266
TfiI	GAWTC	3 cut(s)	36, 166, 646
Tru1I	TTAA	3 cut(s)	303, 393, 408
Tru9I	TTAA	3 cut(s)	303, 393, 408
TseFI	GTSAC	1 cut(s)	338
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	1 cut(s)	551
TspGWI	ACGGA	1 cut(s)	259
Tth111I	GACNNNGTC	1 cut(s)	254
XapI	RAATTY	1 cut(s)	546
XceI	RCATGY	1 cut(s)	528
XhoI	CTCGAG	1 cut(s)	71
XmiI	GTMKAC	2 cut(s)	380, 422
XspI	CTAG	2 cut(s)	20, 321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.