Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002840

Physical Location & Seq

Genomic Coordinates Reverse (-)

50092149 .. 50095458

Gene Structure 3310 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003567

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGGAGACTCGCACTCCCTAGCAGAGCTGGAGCGAATCCAGACCCAAATCCTCCAACGCATTTCAAGTCTCGAGATCTCCTCCGCCTCTCTTCTTCCCCAAGCCACCCCCACTCAAAACGACGCCGTCCCCGCCGACACCGAAGCTCGCCTCTCCGCGATTCTCAAATCCAAAGGCGTCAACGACTTCTCGTTCAAGACAGTCGCCCCCGATTACTACGATTGGCCTCTCGAAGCCCGACGCGACGCCGTCGGAGCCGCCTCCGTCCACCATCTCTGCAAAACCATTGTTCTGGTTAACACTCAAGCTCCACCTAGTGTGGTTGATTGTAGTGACCGCAACAATTCAAAGTATTATCTTGGGGTAGTTCAGTATACTGCTCGGTTTAATGCCGAAGCTGTTAAGAACTTATTGTATACCCTCAACGAAGGCAAAATCGCCAAAAAGAAGTTCAACTTGAGGCTTGCACCTGAGGAGACTTCAACACAATTGACTGGGTTTGAGCACAATGCAGTTACATGTGTTGGCCTGAAAACAGAAATTCCGGTGAAGACTTGTTCCTTGTTGTTATTTACTTTATATTTGATATGCTTTGCTCCTGGAATTACTTTTGATAATCTCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_edit

Protein Analysis

209

Amino Acids

22.88

Weight (kDa)

6.42

Isoelectric Point (pI)

28.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16510 AT4G16510
fragaria_vesca	FvH4_2g25460 FvH4_3g26313 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g26851 FvH4_5g38900 FvH4_6g19840 FvH4_6g26281 FvH4_7g10800
malus_domestica	MD00G1115100.v1.1 MD06G1061300.v1.1
prunus_persica	Prupe.5G072600_v2.0.a1
pyrus_communis	pycom06g05140
rosa_chinensis	RchiOBHm_Chr1g0333271 RchiOBHm_Chr2g0095921 RchiOBHm_Chr2g0099411 RchiOBHm_Chr7g0202881 RchiOBHm_Chr7g0233531
rosa_laevigata	RLG00000003567 RLG00000033632
rosa_multiflora	Rmu_sc0003729.1_g000007 Rmu_sc0033032.1_g000002
rosa_roxburghii	Rroxscaffold_1G00038270 Rroxscaffold_2G00110700 Rroxscaffold_3G00254210
rosa_rugosa	Rorug07G0073500
rosa_samantha	Rh2DG104700 Rh2DG133400 Rh7AG201300 Rh7BG201700 Rh7CG212800 Rh7DG208300
rosa_wichuraiana	Rw7G017610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	374, 416
AccII	CGCG	2 cut(s)	158, 243
AciI	CCGC	5 cut(s)	84, 132, 156, 258, 337
AcsI	RAATTY	1 cut(s)	540
AcyI	GRCGYC	3 cut(s)	123, 177, 246
AdeI	CACNNNGTG	1 cut(s)	317
AflIII	ACRYGT	1 cut(s)	518
AgsI	TTSAA	5 cut(s)	66, 196, 348, 454, 483
AjnI	CCWGG	1 cut(s)	598
AjuI	GAANNNNNNNTTGG	2 cut(s)	434, 466
AluBI	AGCT	4 cut(s)	28, 146, 308, 398
AluI	AGCT	4 cut(s)	28, 146, 308, 398
Alw21I	GWGCWC	1 cut(s)	507
Alw26I	GTCTC	2 cut(s)	74, 470
Ama87I	CYCGRG	1 cut(s)	71
AoxI	GGCC	2 cut(s)	224, 526
ApoI	RAATTY	1 cut(s)	540
AsuHPI	GGTGA	1 cut(s)	559
AvaI	CYCGRG	1 cut(s)	71
AxyI	CCTNAGG	1 cut(s)	471
BbsI	GAAGAC	1 cut(s)	557
Bbv12I	GWGCWC	1 cut(s)	507
BccI	CCATC	1 cut(s)	279
BceAI	ACGGC	2 cut(s)	110, 233
BciT130I	CCWGG	1 cut(s)	600
BcoDI	GTCTC	2 cut(s)	74, 470
BfaI	CTAG	2 cut(s)	20, 315
BglII	AGATCT	1 cut(s)	75
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
Bme1390I	CCNGG	1 cut(s)	600
BmeT110I	CYCGRG	1 cut(s)	71
BmiI	GGNNCC	1 cut(s)	256
BmrFI	CCNGG	1 cut(s)	600
BmrI	ACTGGG	1 cut(s)	504
BmuI	ACTGGG	1 cut(s)	504
BpiI	GAAGAC	1 cut(s)	557
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
BpmI	CTGGAG	1 cut(s)	50
BpuEI	CTTGAG	2 cut(s)	288, 478
BsaHI	GRCGYC	3 cut(s)	123, 177, 246
BsaWI	WCCGGW	1 cut(s)	544
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 292, 322
Bse1I	ACTGG	1 cut(s)	499
Bse21I	CCTNAGG	1 cut(s)	471
BseBI	CCWGG	1 cut(s)	600
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	1 cut(s)	499
BseRI	GAGGAG	2 cut(s)	70, 488
Bsh1236I	CGCG	2 cut(s)	158, 243
BshFI	GGCC	2 cut(s)	226, 528
BsiHKAI	GWGCWC	1 cut(s)	507
BsiHKCI	CYCGRG	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	545
BslFI	GGGAC	1 cut(s)	113
BsmAI	GTCTC	2 cut(s)	74, 470
BsmFI	GGGAC	1 cut(s)	113
BsnI	GGCC	2 cut(s)	226, 528
BsoBI	CYCGRG	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	507
Bsp143I	GATC	1 cut(s)	75
BspACI	CCGC	5 cut(s)	84, 132, 156, 258, 337
BspANI	GGCC	2 cut(s)	226, 528
BspCNI	CTCAG	1 cut(s)	463
BspFNI	CGCG	2 cut(s)	158, 243
BspLI	GGNNCC	1 cut(s)	256
BsrI	ACTGG	1 cut(s)	499
BssMI	GATC	1 cut(s)	75
BssNAI	GTATAC	2 cut(s)	375, 417
BssNI	GRCGYC	3 cut(s)	123, 177, 246
Bst1107I	GTATAC	2 cut(s)	375, 417
Bst2UI	CCWGG	1 cut(s)	600
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	1 cut(s)	96
BstACI	GRCGYC	3 cut(s)	123, 177, 246
BstC8I	GCNNGC	2 cut(s)	148, 465
BstDEI	CTNAG	1 cut(s)	471
BstFNI	CGCG	2 cut(s)	158, 243
BstKTI	GATC	1 cut(s)	78
BstMAI	GTCTC	2 cut(s)	74, 470
BstMBI	GATC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 254
BstNI	CCWGG	1 cut(s)	600
BstNSI	RCATGY	1 cut(s)	522
BstSCI	CCNGG	1 cut(s)	598
BstUI	CGCG	2 cut(s)	158, 243
BstV2I	GAAGAC	1 cut(s)	557
BstX2I	RGATCY	1 cut(s)	75
BstXI	CCANNNNNNTGG	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	75
BstZ17I	GTATAC	2 cut(s)	375, 417
Bsu36I	CCTNAGG	1 cut(s)	471
BsuRI	GGCC	2 cut(s)	226, 528
Cac8I	GCNNGC	2 cut(s)	148, 465
CseI	GACGC	4 cut(s)	131, 166, 249, 254
CviAII	CATG	1 cut(s)	519
DdeI	CTNAG	1 cut(s)	471
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
DraIII	CACNNNGTG	1 cut(s)	317
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
EciI	GGCGGA	1 cut(s)	73
Eco81I	CCTNAGG	1 cut(s)	471
Eco88I	CYCGRG	1 cut(s)	71
EcoRII	CCWGG	1 cut(s)	598
FaeI	CATG	1 cut(s)	522
FaiI	YATR	5 cut(s)	375, 417, 520, 580, 589
FalI	AAGNNNNNCTT	2 cut(s)	440, 472
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	1 cut(s)	518
FauI	CCCGC	1 cut(s)	139
FblI	GTMKAC	2 cut(s)	374, 416
Fnu4HI	GCNGC	1 cut(s)	258
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	2 cut(s)	20, 315
GluI	GCNGC	1 cut(s)	258
GsuI	CTGGAG	1 cut(s)	50
HaeIII	GGCC	2 cut(s)	226, 528
HapII	CCGG	1 cut(s)	545
HgaI	GACGC	4 cut(s)	131, 166, 249, 254
Hin1I	GRCGYC	3 cut(s)	123, 177, 246
Hin1II	CATG	1 cut(s)	522
HincII	GTYRAC	2 cut(s)	181, 298
HindII	GTYRAC	2 cut(s)	181, 298
HinfI	GANTC	3 cut(s)	8, 36, 160
HpaI	GTTAAC	1 cut(s)	298
HpaII	CCGG	1 cut(s)	545
HphI	GGTGA	1 cut(s)	559
Hpy166II	GTNNAC	5 cut(s)	181, 268, 298, 375, 417
Hpy188I	TCNGA	1 cut(s)	254
Hpy188III	TCNNGA	5 cut(s)	40, 71, 73, 196, 230
Hpy8I	GTNNAC	5 cut(s)	181, 268, 298, 375, 417
Hpy99I	CGWCG	4 cut(s)	125, 243, 248, 254
HpyAV	CCTTC	1 cut(s)	422
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4V	TGCA	3 cut(s)	279, 467, 512
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 254
HpyF3I	CTNAG	1 cut(s)	471
Hsp92I	GRCGYC	3 cut(s)	123, 177, 246
Hsp92II	CATG	1 cut(s)	522
KspAI	GTTAAC	1 cut(s)	298
Kzo9I	GATC	1 cut(s)	75
LmnI	GCTCC	4 cut(s)	31, 254, 313, 601
LpnPI	CCDG	9 cut(s)	14, 53, 278, 480, 483, 542, 558, 585, 612
MaeI	CTAG	2 cut(s)	20, 315
MaeIII	GTNAC	2 cut(s)	332, 514
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	3 cut(s)	83, 86, 562
MfeI	CAATTG	1 cut(s)	488
MflI	RGATCY	1 cut(s)	75
MhlI	GDGCHC	1 cut(s)	507
MluCI	AATT	4 cut(s)	343, 488, 540, 603
MlyI	GAGTC	1 cut(s)	2
MmeI	TCCRAC	2 cut(s)	79, 232
MnlI	CCTC	9 cut(s)	62, 91, 97, 161, 237, 271, 431, 453, 466
MseI	TTAA	3 cut(s)	297, 387, 402
MspI	CCGG	1 cut(s)	545
MspR9I	CCNGG	1 cut(s)	600
MunI	CAATTG	1 cut(s)	488
MvaI	CCWGG	1 cut(s)	600
MvnI	CGCG	2 cut(s)	158, 243
MwoI	GCNNNNNNNGC	2 cut(s)	131, 254
NdeII	GATC	1 cut(s)	75
NlaIII	CATG	1 cut(s)	522
NlaIV	GGNNCC	1 cut(s)	256
NmuCI	GTSAC	1 cut(s)	332
NspI	RCATGY	1 cut(s)	522
PaeR7I	CTCGAG	1 cut(s)	71
PciI	ACATGT	1 cut(s)	518
PfeI	GAWTC	2 cut(s)	36, 160
PflFI	GACNNNGTC	2 cut(s)	125, 248
PfoI	TCCNGGA	1 cut(s)	598
PkrI	GCNGC	1 cut(s)	259
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
PscI	ACATGT	1 cut(s)	518
Psp6I	CCWGG	1 cut(s)	598
PspGI	CCWGG	1 cut(s)	598
PspN4I	GGNNCC	1 cut(s)	256
PsuI	RGATCY	1 cut(s)	75
PsyI	GACNNNGTC	2 cut(s)	125, 248
SaqAI	TTAA	3 cut(s)	297, 387, 402
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	1 cut(s)	75
SchI	GAGTC	1 cut(s)	2
ScrFI	CCNGG	1 cut(s)	600
SduI	GDGCHC	1 cut(s)	507
SetI	ASST	6 cut(s)	30, 148, 310, 316, 400, 472
Sfr274I	CTCGAG	1 cut(s)	71
SlaI	CTCGAG	1 cut(s)	71
SmlI	CTYRAG	3 cut(s)	71, 303, 457
SmoI	CTYRAG	3 cut(s)	71, 303, 457
Sse9I	AATT	4 cut(s)	343, 488, 540, 603
SsiI	CCGC	5 cut(s)	84, 132, 156, 258, 337
SspMI	CTAG	2 cut(s)	20, 315
StyD4I	CCNGG	1 cut(s)	598
TaaI	ACNGT	1 cut(s)	202
TaqI	TCGA	2 cut(s)	72, 231
TasI	AATT	4 cut(s)	343, 488, 540, 603
TauI	GCSGC	1 cut(s)	260
TfiI	GAWTC	2 cut(s)	36, 160
Tru1I	TTAA	3 cut(s)	297, 387, 402
Tru9I	TTAA	3 cut(s)	297, 387, 402
TseFI	GTSAC	1 cut(s)	332
Tsp45I	GTSAC	1 cut(s)	332
TspGWI	ACGGA	1 cut(s)	253
Tth111I	GACNNNGTC	2 cut(s)	125, 248
XapI	RAATTY	1 cut(s)	540
XceI	RCATGY	1 cut(s)	522
XhoI	CTCGAG	1 cut(s)	71
XmiI	GTMKAC	2 cut(s)	374, 416
XspI	CTAG	2 cut(s)	20, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.