Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002840

Physical Location & Seq

Genomic Coordinates Forward (+)

19888545 .. 19892919

Gene Structure 4375 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG208300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGGAGACTCGCACTCCCTAGCAGAGCTGGAGCGAATCCAAACCCAAATCCTCCAACGCATTTCAAGCCTCGAGATCTCCTCCGCCTCTCTTCTTCCCCAACCCATCCCCACCCCCACCCCGACTCAAAACGACGCCGTCCACGACGACACCGAAGCTCGCCTCTCCGCGATTCTCAAATCCAAAGGCGTCAACGACTTCTCCTTCAAGACAGTCGCCTCCGATTACTACGACTGGCCTCTCGAAGCCCGACGCGACGCCGTCGGAGCCGCCTCCATCCACCATCTCTGCAAAACCATTGTTCTGGTTAACACTCAAGCTCCACCTAGTGTGGTTGATTGTAGTGACCGCAACAATTCAAAGTATTATCTTGTGGTAGTTCAGTATACTGCTCGGTTTAATGCCGAAGCTGTTAAGAACTTCTTGTATACCCTCAACGAAGGCAAAATCGCCAAAAAGAAGTTCAACTTGAGGCTTGCACCTGAGGAGACTTCAACACAATTGACTGGGTTTGAGCACAATGCAGTTACATGTGTTGGCATGAAAACAGAAATTCCGGTGAAGACTTGTTTCTTGTTGTTATTTACTTTATATTTGATATGCTTTGCTCCTGGAATTACTTTTGATAATCTCATCGAACCAGAATCATTTTTGCTTGATATGACATCGAAGATTCCCTGCTTTATATTGGCTTTTATGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_edit

Protein Analysis

234

Amino Acids

26.06

Weight (kDa)

5.74

Isoelectric Point (pI)

31.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16510 AT4G16510
fragaria_vesca	FvH4_2g25460 FvH4_3g26313 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g26851 FvH4_5g38900 FvH4_6g19840 FvH4_6g26281 FvH4_7g10800
malus_domestica	MD00G1115100.v1.1 MD06G1061300.v1.1
prunus_persica	Prupe.5G072600_v2.0.a1
pyrus_communis	pycom06g05140
rosa_chinensis	RchiOBHm_Chr1g0333271 RchiOBHm_Chr2g0095921 RchiOBHm_Chr2g0099411 RchiOBHm_Chr7g0202881 RchiOBHm_Chr7g0233531
rosa_laevigata	RLG00000003567 RLG00000033632
rosa_multiflora	Rmu_sc0003729.1_g000007 Rmu_sc0033032.1_g000002
rosa_roxburghii	Rroxscaffold_1G00038270 Rroxscaffold_2G00110700 Rroxscaffold_3G00254210
rosa_rugosa	Rorug07G0073500
rosa_samantha	Rh2DG104700 Rh2DG133400 Rh7AG201300 Rh7BG201700 Rh7CG212800 Rh7DG208300
rosa_wichuraiana	Rw7G017610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	386, 428
AccII	CGCG	2 cut(s)	170, 255
AciI	CCGC	4 cut(s)	84, 168, 270, 349
AcsI	RAATTY	1 cut(s)	552
AcyI	GRCGYC	3 cut(s)	135, 189, 258
AdeI	CACNNNGTG	1 cut(s)	329
AflIII	ACRYGT	1 cut(s)	530
AgsI	TTSAA	5 cut(s)	66, 208, 360, 466, 495
AjnI	CCWGG	1 cut(s)	610
AjuI	GAANNNNNNNTTGG	2 cut(s)	446, 478
AluBI	AGCT	4 cut(s)	28, 158, 320, 410
AluI	AGCT	4 cut(s)	28, 158, 320, 410
Alw21I	GWGCWC	1 cut(s)	519
Alw26I	GTCTC	1 cut(s)	482
Ama87I	CYCGRG	1 cut(s)	71
AoxI	GGCC	1 cut(s)	236
ApoI	RAATTY	1 cut(s)	552
AsuHPI	GGTGA	1 cut(s)	571
AvaI	CYCGRG	1 cut(s)	71
AxyI	CCTNAGG	1 cut(s)	483
BbsI	GAAGAC	1 cut(s)	569
Bbv12I	GWGCWC	1 cut(s)	519
BccI	CCATC	3 cut(s)	113, 284, 291
BceAI	ACGGC	2 cut(s)	122, 245
BciT130I	CCWGG	1 cut(s)	612
BcoDI	GTCTC	1 cut(s)	482
BfaI	CTAG	2 cut(s)	20, 327
BglII	AGATCT	1 cut(s)	75
BisI	GCNGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	271
Bme1390I	CCNGG	1 cut(s)	612
BmeT110I	CYCGRG	1 cut(s)	71
BmiI	GGNNCC	1 cut(s)	268
BmrFI	CCNGG	1 cut(s)	612
BmrI	ACTGGG	1 cut(s)	516
BmuI	ACTGGG	1 cut(s)	516
BpiI	GAAGAC	1 cut(s)	569
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
BpmI	CTGGAG	1 cut(s)	50
BpuEI	CTTGAG	2 cut(s)	300, 490
BsaHI	GRCGYC	3 cut(s)	135, 189, 258
BsaWI	WCCGGW	1 cut(s)	556
BsaXI	ACNNNNNCTCC	5 cut(s)	29, 185, 215, 304, 334
Bse1I	ACTGG	2 cut(s)	239, 511
Bse21I	CCTNAGG	1 cut(s)	483
BseBI	CCWGG	1 cut(s)	612
BseGI	GGATG	2 cut(s)	105, 276
BseMII	CTCAG	1 cut(s)	474
BseNI	ACTGG	2 cut(s)	239, 511
BseRI	GAGGAG	2 cut(s)	70, 500
Bsh1236I	CGCG	2 cut(s)	170, 255
BshFI	GGCC	1 cut(s)	238
BsiHKAI	GWGCWC	1 cut(s)	519
BsiHKCI	CYCGRG	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	557
BsmAI	GTCTC	1 cut(s)	482
BsnI	GGCC	1 cut(s)	238
BsoBI	CYCGRG	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	519
Bsp143I	GATC	1 cut(s)	75
BspACI	CCGC	4 cut(s)	84, 168, 270, 349
BspANI	GGCC	1 cut(s)	238
BspCNI	CTCAG	1 cut(s)	475
BspFNI	CGCG	2 cut(s)	170, 255
BspLI	GGNNCC	1 cut(s)	268
BsrI	ACTGG	2 cut(s)	239, 511
BssMI	GATC	1 cut(s)	75
BssNAI	GTATAC	2 cut(s)	387, 429
BssNI	GRCGYC	3 cut(s)	135, 189, 258
Bst1107I	GTATAC	2 cut(s)	387, 429
Bst2UI	CCWGG	1 cut(s)	612
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	1 cut(s)	96
BstACI	GRCGYC	3 cut(s)	135, 189, 258
BstC8I	GCNNGC	2 cut(s)	160, 477
BstDEI	CTNAG	1 cut(s)	483
BstF5I	GGATG	2 cut(s)	105, 276
BstFNI	CGCG	2 cut(s)	170, 255
BstKTI	GATC	1 cut(s)	78
BstMAI	GTCTC	1 cut(s)	482
BstMBI	GATC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 266
BstNI	CCWGG	1 cut(s)	612
BstNSI	RCATGY	1 cut(s)	534
BstSCI	CCNGG	1 cut(s)	610
BstUI	CGCG	2 cut(s)	170, 255
BstV2I	GAAGAC	1 cut(s)	569
BstX2I	RGATCY	1 cut(s)	75
BstXI	CCANNNNNNTGG	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	75
BstZ17I	GTATAC	2 cut(s)	387, 429
Bsu36I	CCTNAGG	1 cut(s)	483
BsuRI	GGCC	1 cut(s)	238
BtsCI	GGATG	2 cut(s)	105, 276
Cac8I	GCNNGC	2 cut(s)	160, 477
CseI	GACGC	4 cut(s)	143, 178, 261, 266
CviAII	CATG	2 cut(s)	531, 541
DdeI	CTNAG	1 cut(s)	483
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
DraIII	CACNNNGTG	1 cut(s)	329
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
EciI	GGCGGA	1 cut(s)	73
Eco81I	CCTNAGG	1 cut(s)	483
Eco88I	CYCGRG	1 cut(s)	71
EcoRII	CCWGG	1 cut(s)	610
FaeI	CATG	2 cut(s)	534, 544
FaiI	YATR	9 cut(s)	387, 429, 532, 542, 592, 601, 662, 686, 698
FalI	AAGNNNNNCTT	4 cut(s)	407, 439, 452, 484
FatI	CATG	2 cut(s)	530, 540
FblI	GTMKAC	2 cut(s)	386, 428
Fnu4HI	GCNGC	1 cut(s)	270
FokI	GGATG	2 cut(s)	92, 263
Fsp4HI	GCNGC	1 cut(s)	270
FspBI	CTAG	2 cut(s)	20, 327
GluI	GCNGC	1 cut(s)	270
GsuI	CTGGAG	1 cut(s)	50
HaeIII	GGCC	1 cut(s)	238
HapII	CCGG	1 cut(s)	557
HgaI	GACGC	4 cut(s)	143, 178, 261, 266
Hin1I	GRCGYC	3 cut(s)	135, 189, 258
Hin1II	CATG	2 cut(s)	534, 544
HincII	GTYRAC	2 cut(s)	193, 310
HindII	GTYRAC	2 cut(s)	193, 310
HinfI	GANTC	6 cut(s)	8, 36, 124, 172, 644, 673
HpaI	GTTAAC	1 cut(s)	310
HpaII	CCGG	1 cut(s)	557
HphI	GGTGA	1 cut(s)	571
Hpy166II	GTNNAC	5 cut(s)	142, 193, 310, 387, 429
Hpy188I	TCNGA	2 cut(s)	223, 266
Hpy188III	TCNNGA	4 cut(s)	73, 208, 242, 702
Hpy8I	GTNNAC	5 cut(s)	142, 193, 310, 387, 429
Hpy99I	CGWCG	5 cut(s)	137, 149, 255, 260, 266
HpyAV	CCTTC	2 cut(s)	214, 434
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4V	TGCA	3 cut(s)	291, 479, 524
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 266
HpyF3I	CTNAG	1 cut(s)	483
Hsp92I	GRCGYC	3 cut(s)	135, 189, 258
Hsp92II	CATG	2 cut(s)	534, 544
KspAI	GTTAAC	1 cut(s)	310
Kzo9I	GATC	1 cut(s)	75
LmnI	GCTCC	4 cut(s)	31, 266, 325, 613
MaeI	CTAG	2 cut(s)	20, 327
MaeIII	GTNAC	2 cut(s)	344, 526
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	4 cut(s)	83, 86, 574, 682
MfeI	CAATTG	1 cut(s)	500
MflI	RGATCY	1 cut(s)	75
MhlI	GDGCHC	1 cut(s)	519
MluCI	AATT	4 cut(s)	355, 500, 552, 615
MlyI	GAGTC	2 cut(s)	2, 118
MmeI	TCCRAC	2 cut(s)	79, 244
MseI	TTAA	3 cut(s)	309, 399, 414
MspI	CCGG	1 cut(s)	557
MspR9I	CCNGG	1 cut(s)	612
MunI	CAATTG	1 cut(s)	500
MvaI	CCWGG	1 cut(s)	612
MvnI	CGCG	2 cut(s)	170, 255
MwoI	GCNNNNNNNGC	2 cut(s)	66, 266
NdeII	GATC	1 cut(s)	75
NlaIII	CATG	2 cut(s)	534, 544
NlaIV	GGNNCC	1 cut(s)	268
NmuCI	GTSAC	1 cut(s)	344
NspI	RCATGY	1 cut(s)	534
PaeR7I	CTCGAG	1 cut(s)	71
PciI	ACATGT	1 cut(s)	530
PcsI	WCGNNNNNNNCGW	2 cut(s)	141, 150
PfeI	GAWTC	4 cut(s)	36, 172, 644, 673
PflFI	GACNNNGTC	2 cut(s)	137, 260
PfoI	TCCNGGA	1 cut(s)	610
PkrI	GCNGC	1 cut(s)	271
PleI	GAGTC	2 cut(s)	2, 118
PpsI	GAGTC	2 cut(s)	2, 118
PscI	ACATGT	1 cut(s)	530
Psp6I	CCWGG	1 cut(s)	610
PspGI	CCWGG	1 cut(s)	610
PspN4I	GGNNCC	1 cut(s)	268
PsuI	RGATCY	1 cut(s)	75
PsyI	GACNNNGTC	2 cut(s)	137, 260
SaqAI	TTAA	3 cut(s)	309, 399, 414
SatI	GCNGC	1 cut(s)	270
Sau3AI	GATC	1 cut(s)	75
SchI	GAGTC	2 cut(s)	2, 118
ScrFI	CCNGG	1 cut(s)	612
SduI	GDGCHC	1 cut(s)	519
SetI	ASST	6 cut(s)	30, 160, 322, 328, 412, 484
Sfr274I	CTCGAG	1 cut(s)	71
SlaI	CTCGAG	1 cut(s)	71
SmlI	CTYRAG	3 cut(s)	71, 315, 469
SmoI	CTYRAG	3 cut(s)	71, 315, 469
Sse9I	AATT	4 cut(s)	355, 500, 552, 615
SsiI	CCGC	4 cut(s)	84, 168, 270, 349
SspMI	CTAG	2 cut(s)	20, 327
StyD4I	CCNGG	1 cut(s)	610
TaaI	ACNGT	1 cut(s)	214
TaqI	TCGA	4 cut(s)	72, 243, 636, 668
TasI	AATT	4 cut(s)	355, 500, 552, 615
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	4 cut(s)	36, 172, 644, 673
Tru1I	TTAA	3 cut(s)	309, 399, 414
Tru9I	TTAA	3 cut(s)	309, 399, 414
TseFI	GTSAC	1 cut(s)	344
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	1 cut(s)	557
Tth111I	GACNNNGTC	2 cut(s)	137, 260
XapI	RAATTY	1 cut(s)	552
XceI	RCATGY	1 cut(s)	534
XhoI	CTCGAG	1 cut(s)	71
XmiI	GTMKAC	2 cut(s)	386, 428
XspI	CTAG	2 cut(s)	20, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.