Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002840

Physical Location & Seq

Genomic Coordinates Forward (+)

29790712 .. 29792078

Gene Structure 1367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033632

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGAGTGGGGAGATCCCTCGAGATTCCACCCTGGGTGCCAGAGTGAAGGTCCGCAGCTTCATGGTGGCGAGCAAAGGAGAGAAGACGGTGGCGGAACCACTACAACACCCCTCGATGGCGGCGCTTTCTCCGATGGAGACGGTGATGCACCTGTGATCGGTTTTCACCGATTTGGGTTGGGCCCCCTGTTTAAGTTCTTGTTTGGTTTTGGGTTCATGGTTTGGGCCCTCTGTTTTATGTTTGCTACCAAAGTGATCGTAGCACCTTCAATTGCTCAAACCACCGGCCTGAATACCAGCACCGACGAGGCTGCAAGCGTAGTCGCTGACTTCAACGCCGGAGTCGCTGACTTAAACGCTAGAGCCCAACACCGAAACAGTCGCCAATCTCTGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

13.98

Weight (kDa)

5.15

Isoelectric Point (pI)

31.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16510 AT4G16510
fragaria_vesca	FvH4_2g25460 FvH4_3g26313 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g26851 FvH4_5g38900 FvH4_6g19840 FvH4_6g26281 FvH4_7g10800
malus_domestica	MD00G1115100.v1.1 MD06G1061300.v1.1
prunus_persica	Prupe.5G072600_v2.0.a1
pyrus_communis	pycom06g05140
rosa_chinensis	RchiOBHm_Chr1g0333271 RchiOBHm_Chr2g0095921 RchiOBHm_Chr2g0099411 RchiOBHm_Chr7g0202881 RchiOBHm_Chr7g0233531
rosa_laevigata	RLG00000003567 RLG00000033632
rosa_multiflora	Rmu_sc0003729.1_g000007 Rmu_sc0033032.1_g000002
rosa_roxburghii	Rroxscaffold_1G00038270 Rroxscaffold_2G00110700 Rroxscaffold_3G00254210
rosa_rugosa	Rorug07G0073500
rosa_samantha	Rh2DG104700 Rh2DG133400 Rh7AG201300 Rh7BG201700 Rh7CG212800 Rh7DG208300
rosa_wichuraiana	Rw7G017610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	36
AccB7I	CCANNNNNTGG	1 cut(s)	391
AciI	CCGC	3 cut(s)	53, 93, 120
AclWI	GGATC	1 cut(s)	8
AfiI	CCNNNNNNNGG	3 cut(s)	116, 158, 391
AgsI	TTSAA	2 cut(s)	270, 334
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	1 cut(s)	58
AluI	AGCT	1 cut(s)	58
Alw26I	GTCTC	1 cut(s)	132
AlwI	GGATC	1 cut(s)	8
Ama87I	CYCGRG	1 cut(s)	19
AoxI	GGCC	4 cut(s)	181, 225, 286, 393
ApaI	GGGCCC	2 cut(s)	185, 229
ApeKI	GCWGC	2 cut(s)	55, 311
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	5 cut(s)	50, 181, 182, 225, 226
AsuHPI	GGTGA	2 cut(s)	155, 158
AvaI	CYCGRG	1 cut(s)	19
AvaII	GGWCC	1 cut(s)	50
BaeGI	GKGCMC	2 cut(s)	185, 229
BanI	GGYRCC	1 cut(s)	36
BanII	GRGCYC	3 cut(s)	185, 229, 367
BbsI	GAAGAC	1 cut(s)	90
BbvI	GCAGC	2 cut(s)	67, 298
BccI	CCATC	2 cut(s)	110, 128
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BciT130I	CCWGG	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	132
BfaI	CTAG	1 cut(s)	360
BfoI	RGCGCY	1 cut(s)	126
BisI	GCNGC	3 cut(s)	56, 121, 312
BlsI	GCNGC	3 cut(s)	57, 122, 313
Bme1390I	CCNGG	1 cut(s)	33
Bme18I	GGWCC	1 cut(s)	50
BmeT110I	CYCGRG	1 cut(s)	19
BmgT120I	GGNCC	5 cut(s)	50, 181, 182, 225, 226
BmiI	GGNNCC	5 cut(s)	38, 97, 183, 184, 227
BmrFI	CCNGG	1 cut(s)	33
BmsI	GCATC	1 cut(s)	136
BpiI	GAAGAC	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	31, 32
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 158, 391
Bse118I	RCCGGY	1 cut(s)	284
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	2 cut(s)	31, 32
BseLI	CCNNNNNNNGG	3 cut(s)	116, 158, 391
BseSI	GKGCMC	2 cut(s)	185, 229
BseXI	GCAGC	2 cut(s)	67, 298
BshFI	GGCC	4 cut(s)	183, 227, 288, 395
BshNI	GGYRCC	1 cut(s)	36
BsiHKCI	CYCGRG	1 cut(s)	19
BsiSI	CCGG	2 cut(s)	285, 339
BslI	CCNNNNNNNGG	3 cut(s)	116, 158, 391
BsmAI	GTCTC	1 cut(s)	132
BsmBI	CGTCTC	1 cut(s)	132
BsnI	GGCC	4 cut(s)	183, 227, 288, 395
BsoBI	CYCGRG	1 cut(s)	19
Bsp120I	GGGCCC	2 cut(s)	181, 225
Bsp1286I	GDGCHC	3 cut(s)	185, 229, 367
Bsp143I	GATC	3 cut(s)	13, 156, 255
BspACI	CCGC	3 cut(s)	53, 93, 120
BspANI	GGCC	4 cut(s)	183, 227, 288, 395
BspLI	GGNNCC	5 cut(s)	38, 97, 183, 184, 227
BspPI	GGATC	1 cut(s)	8
BspT107I	GGYRCC	1 cut(s)	36
BsrFI	RCCGGY	1 cut(s)	284
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	2 cut(s)	31, 32
BssMI	GATC	3 cut(s)	13, 156, 255
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	3 cut(s)	89, 143, 380
BstC8I	GCNNGC	2 cut(s)	71, 316
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	3 cut(s)	16, 159, 258
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	3 cut(s)	13, 156, 255
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstNI	CCWGG	1 cut(s)	33
BstSCI	CCNGG	1 cut(s)	31
BstSLI	GKGCMC	2 cut(s)	185, 229
BstV1I	GCAGC	2 cut(s)	67, 298
BstV2I	GAAGAC	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BsuRI	GGCC	4 cut(s)	183, 227, 288, 395
Cac8I	GCNNGC	2 cut(s)	71, 316
CfoI	GCGC	1 cut(s)	125
Cfr10I	RCCGGY	1 cut(s)	284
Cfr13I	GGNCC	5 cut(s)	50, 181, 182, 225, 226
CviAII	CATG	2 cut(s)	62, 217
CviJI	RGCY	7 cut(s)	58, 183, 227, 288, 311, 365, 395
CviKI_1	RGCY	7 cut(s)	58, 183, 227, 288, 311, 365, 395
DpnI	GATC	3 cut(s)	15, 158, 257
DpnII	GATC	3 cut(s)	13, 156, 255
EciI	GGCGGA	1 cut(s)	108
Eco24I	GRGCYC	3 cut(s)	185, 229, 367
Eco47I	GGWCC	1 cut(s)	50
Eco88I	CYCGRG	1 cut(s)	19
EcoO109I	RGGNCCY	2 cut(s)	182, 226
EcoRII	CCWGG	1 cut(s)	31
EcoT38I	GRGCYC	3 cut(s)	185, 229, 367
Esp3I	CGTCTC	1 cut(s)	132
FaeI	CATG	2 cut(s)	65, 220
FaiI	YATR	3 cut(s)	63, 218, 239
FatI	CATG	2 cut(s)	61, 216
Fnu4HI	GCNGC	3 cut(s)	56, 121, 312
FriOI	GRGCYC	3 cut(s)	185, 229, 367
Fsp4HI	GCNGC	3 cut(s)	56, 121, 312
FspBI	CTAG	1 cut(s)	360
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	3 cut(s)	56, 121, 312
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	4 cut(s)	183, 227, 288, 395
HapII	CCGG	2 cut(s)	285, 339
HhaI	GCGC	1 cut(s)	125
Hin1II	CATG	2 cut(s)	65, 220
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HinfI	GANTC	2 cut(s)	24, 342
HpaII	CCGG	2 cut(s)	285, 339
HphI	GGTGA	2 cut(s)	155, 158
Hpy188I	TCNGA	1 cut(s)	133
Hpy188III	TCNNGA	1 cut(s)	21
Hpy99I	CGWCG	1 cut(s)	308
HpyAV	CCTTC	2 cut(s)	41, 276
HpyCH4III	ACNGT	3 cut(s)	89, 143, 380
HpyCH4V	TGCA	2 cut(s)	149, 314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
Hsp92II	CATG	2 cut(s)	65, 220
HspAI	GCGC	1 cut(s)	123
Kzo9I	GATC	3 cut(s)	13, 156, 255
Lsp1109I	GCAGC	2 cut(s)	67, 298
LweI	GCATC	1 cut(s)	136
MaeI	CTAG	1 cut(s)	360
MalI	GATC	3 cut(s)	15, 158, 257
MboI	GATC	3 cut(s)	13, 156, 255
MboII	GAAGA	1 cut(s)	95
MfeI	CAATTG	1 cut(s)	270
MflI	RGATCY	1 cut(s)	13
MhlI	GDGCHC	3 cut(s)	185, 229, 367
MluCI	AATT	1 cut(s)	270
MlyI	GAGTC	1 cut(s)	351
MnlI	CCTC	4 cut(s)	28, 122, 239, 301
MseI	TTAA	2 cut(s)	192, 353
MspI	CCGG	2 cut(s)	285, 339
MspR9I	CCNGG	1 cut(s)	33
MunI	CAATTG	1 cut(s)	270
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	344
NdeII	GATC	3 cut(s)	13, 156, 255
NlaIII	CATG	2 cut(s)	65, 220
NlaIV	GGNNCC	5 cut(s)	38, 97, 183, 184, 227
PaeR7I	CTCGAG	1 cut(s)	19
PasI	CCCWGGG	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	24
PflMI	CCANNNNNTGG	1 cut(s)	391
PkrI	GCNGC	3 cut(s)	57, 122, 313
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	5 cut(s)	38, 97, 183, 184, 227
PspOMI	GGGCCC	2 cut(s)	181, 225
PspPI	GGNCC	5 cut(s)	50, 181, 182, 225, 226
PsuI	RGATCY	1 cut(s)	13
SaqAI	TTAA	2 cut(s)	192, 353
SatI	GCNGC	3 cut(s)	56, 121, 312
Sau3AI	GATC	3 cut(s)	13, 156, 255
Sau96I	GGNCC	5 cut(s)	50, 181, 182, 225, 226
SchI	GAGTC	1 cut(s)	351
ScrFI	CCNGG	1 cut(s)	33
SduI	GDGCHC	3 cut(s)	185, 229, 367
SetI	ASST	4 cut(s)	52, 60, 154, 268
SfaNI	GCATC	1 cut(s)	136
Sfr274I	CTCGAG	1 cut(s)	19
SinI	GGWCC	1 cut(s)	50
SlaI	CTCGAG	1 cut(s)	19
SmlI	CTYRAG	1 cut(s)	19
SmoI	CTYRAG	1 cut(s)	19
Sse9I	AATT	1 cut(s)	270
SsiI	CCGC	3 cut(s)	53, 93, 120
SspMI	CTAG	1 cut(s)	360
StyD4I	CCNGG	1 cut(s)	31
TaaI	ACNGT	3 cut(s)	89, 143, 380
TaqI	TCGA	2 cut(s)	20, 114
TasI	AATT	1 cut(s)	270
TauI	GCSGC	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	24
Tru1I	TTAA	2 cut(s)	192, 353
Tru9I	TTAA	2 cut(s)	192, 353
TseI	GCWGC	2 cut(s)	55, 311
TspDTI	ATGAA	2 cut(s)	50, 205
Van91I	CCANNNNNTGG	1 cut(s)	391
VpaK11BI	GGWCC	1 cut(s)	50
XhoI	CTCGAG	1 cut(s)	19
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.