RchiOBHm_Chr7g0233531

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002840
Physical Location & Seq
Forward (+)
57992683 .. 57993238
556 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20934

Sequence Viewer

Length: 219 bp
ATGGACTCTAGAATGACCCAGTCCCTTCGAGGGACAAGTGTGTGGGGAGATCAGCTGAGATTCCACCATGGGTGTCGGATAGAAAGCTTGCAGCTTCATGCTACTAAGCACGGGATGGAAGATGGCGAAGGATCCATATCAACCTCTTCGACGGCGGCGTGTTCCCCAATGGTGAAGACGCGTTCTGTGTGGTTTTCGGTTACCACCAACCTGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

7.9

Weight (kDa)

7.9

Isoelectric Point (pI)

49.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 181
AciI CCGC 1 cut(s) 155
AclWI GGATC 2 cut(s) 126, 139
AfiI CCNNNNNNNGG 1 cut(s) 30
AflIII ACRYGT 1 cut(s) 179
AjnI CCWGG 1 cut(s) 210
AluBI AGCT 3 cut(s) 55, 87, 94
AluI AGCT 3 cut(s) 55, 87, 94
AlwI GGATC 2 cut(s) 126, 139
ApeKI GCWGC 1 cut(s) 91
AsuHPI GGTGA 1 cut(s) 184
BamHI GGATCC 1 cut(s) 131
BbsI GAAGAC 1 cut(s) 182
BbvI GCAGC 1 cut(s) 103
BccI CCATC 2 cut(s) 109, 116
BceAI ACGGC 1 cut(s) 168
BciT130I CCWGG 1 cut(s) 212
BfaI CTAG 1 cut(s) 9
BisI GCNGC 2 cut(s) 92, 156
BlsI GCNGC 2 cut(s) 93, 157
Bme1390I CCNGG 1 cut(s) 212
BmiI GGNNCC 1 cut(s) 133
BmrFI CCNGG 1 cut(s) 212
BmrI ACTGGG 1 cut(s) 13
BmuI ACTGGG 1 cut(s) 13
BpiI GAAGAC 1 cut(s) 182
BsaBI GATNNNNATC 1 cut(s) 136
BsaJI CCNNGG 2 cut(s) 67, 211
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse1I ACTGG 1 cut(s) 19
Bse8I GATNNNNATC 1 cut(s) 136
BseBI CCWGG 1 cut(s) 212
BseDI CCNNGG 2 cut(s) 67, 211
BseGI GGATG 1 cut(s) 120
BseJI GATNNNNATC 1 cut(s) 136
BseLI CCNNNNNNNGG 1 cut(s) 30
BseMII CTCAG 1 cut(s) 47
BseNI ACTGG 1 cut(s) 19
BseXI GCAGC 1 cut(s) 103
Bsh1236I CGCG 1 cut(s) 181
BslFI GGGAC 2 cut(s) 7, 46
BslI CCNNNNNNNGG 1 cut(s) 30
BsmFI GGGAC 2 cut(s) 7, 46
Bsp143I GATC 2 cut(s) 49, 131
Bsp19I CCATGG 1 cut(s) 67
BspACI CCGC 1 cut(s) 155
BspCNI CTCAG 1 cut(s) 48
BspFNI CGCG 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 133
BspPI GGATC 2 cut(s) 126, 139
BsrI ACTGG 1 cut(s) 19
BssECI CCNNGG 2 cut(s) 67, 211
BssMI GATC 2 cut(s) 49, 131
BssT1I CCWWGG 1 cut(s) 67
Bst2UI CCWGG 1 cut(s) 212
Bst6I CTCTTC 1 cut(s) 151
BstC8I GCNNGC 1 cut(s) 89
BstDEI CTNAG 2 cut(s) 56, 105
BstDSI CCRYGG 1 cut(s) 67
BstEII GGTNACC 1 cut(s) 199
BstF5I GGATG 1 cut(s) 120
BstFNI CGCG 1 cut(s) 181
BstKTI GATC 2 cut(s) 52, 134
BstMBI GATC 2 cut(s) 49, 131
BstNI CCWGG 1 cut(s) 212
BstPI GGTNACC 1 cut(s) 199
BstSCI CCNGG 1 cut(s) 210
BstUI CGCG 1 cut(s) 181
BstV1I GCAGC 1 cut(s) 103
BstV2I GAAGAC 1 cut(s) 182
BstX2I RGATCY 1 cut(s) 131
BstXI CCANNNNNNTGG 1 cut(s) 211
BstYI RGATCY 1 cut(s) 131
BtgI CCRYGG 1 cut(s) 67
BtsCI GGATG 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 89
CseI GACGC 1 cut(s) 187
CviAII CATG 2 cut(s) 68, 98
CviJI RGCY 4 cut(s) 55, 87, 94, 216
CviKI_1 RGCY 4 cut(s) 55, 87, 94, 216
DdeI CTNAG 2 cut(s) 56, 105
DpnI GATC 2 cut(s) 51, 133
DpnII GATC 2 cut(s) 49, 131
Eam1104I CTCTTC 1 cut(s) 151
EarI CTCTTC 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 67
Eco91I GGTNACC 1 cut(s) 199
EcoO65I GGTNACC 1 cut(s) 199
EcoRII CCWGG 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 67
FaeI CATG 2 cut(s) 71, 101
FaiI YATR 3 cut(s) 69, 99, 137
FaqI GGGAC 2 cut(s) 7, 46
FatI CATG 2 cut(s) 67, 97
Fnu4HI GCNGC 2 cut(s) 92, 156
FokI GGATG 1 cut(s) 127
Fsp4HI GCNGC 2 cut(s) 92, 156
FspBI CTAG 1 cut(s) 9
GluI GCNGC 2 cut(s) 92, 156
HgaI GACGC 1 cut(s) 187
Hin1II CATG 2 cut(s) 71, 101
HindIII AAGCTT 1 cut(s) 85
HinfI GANTC 2 cut(s) 5, 60
HphI GGTGA 1 cut(s) 184
Hpy188I TCNGA 1 cut(s) 78
Hpy188III TCNNGA 1 cut(s) 9
Hpy99I CGWCG 1 cut(s) 154
HpyAV CCTTC 2 cut(s) 35, 122
HpyCH4V TGCA 1 cut(s) 91
HpyF3I CTNAG 2 cut(s) 56, 105
Hsp92II CATG 2 cut(s) 71, 101
Kzo9I GATC 2 cut(s) 49, 131
LpnPI CCDG 2 cut(s) 32, 197
Lsp1109I GCAGC 1 cut(s) 103
MaeI CTAG 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 199
MalI GATC 2 cut(s) 51, 133
MboI GATC 2 cut(s) 49, 131
MboII GAAGA 3 cut(s) 131, 138, 187
MflI RGATCY 1 cut(s) 131
MluI ACGCGT 1 cut(s) 179
MmeI TCCRAC 1 cut(s) 56
MnlI CCTC 2 cut(s) 23, 154
MspA1I CMGCKG 1 cut(s) 55
MspR9I CCNGG 1 cut(s) 212
MvaI CCWGG 1 cut(s) 212
MvnI CGCG 1 cut(s) 181
NcoI CCATGG 1 cut(s) 67
NdeII GATC 2 cut(s) 49, 131
NlaIII CATG 2 cut(s) 71, 101
NlaIV GGNNCC 1 cut(s) 133
PcsI WCGNNNNNNNCGW 1 cut(s) 155
PfeI GAWTC 1 cut(s) 60
PflFI GACNNNGTC 1 cut(s) 19
PkrI GCNGC 2 cut(s) 93, 157
Psp6I CCWGG 1 cut(s) 210
PspEI GGTNACC 1 cut(s) 199
PspGI CCWGG 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 133
PsuI RGATCY 1 cut(s) 131
PsyI GACNNNGTC 1 cut(s) 19
PvuII CAGCTG 1 cut(s) 55
SatI GCNGC 2 cut(s) 92, 156
Sau3AI GATC 2 cut(s) 49, 131
ScrFI CCNGG 1 cut(s) 212
SetI ASST 5 cut(s) 57, 89, 96, 146, 213
SsiI CCGC 1 cut(s) 155
SspMI CTAG 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 210
StyI CCWWGG 1 cut(s) 67
TaqI TCGA 2 cut(s) 28, 149
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 1 cut(s) 60
TseI GCWGC 1 cut(s) 91
TspDTI ATGAA 1 cut(s) 86
Tth111I GACNNNGTC 1 cut(s) 19
XbaI TCTAGA 1 cut(s) 8
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.