Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002840

Physical Location & Seq

Genomic Coordinates Reverse (-)

13317336 .. 13318077

Gene Structure 742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g19840.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCTGCCAAAGTCCCCATTTCAGGTCTCCTCCCATCTCTTCTCTTCAACCCATCTCATCTCAATCTCCAAAACATTCTTATTTCCTCTGCTAATTGTAGTAAGCTCCACCCCTCCGTTGCCGCTAGGAAAACGTCCCCGGAACCGGCTCTGAATGGTGTTTTGGACGCTAGAATGACCCTGTCTTTTTCAAAGACAAATGAGTGGGGAGATCCTTTGAGATTCCATCATGGGTGCCGGTGCGAAGGTCCGCAGCTTCATGGCAGCGAGCAAAGGAAAAAGGACGACGATGGATCCATTGCAAATCCCCCCGACGGCTGCTTTTCCAATAGTGTTGGCAATATCTTTATGTTATTAGGGTTTAGCCTTGTGTTTAGTTTTCCTACTATGTTGCCGTCGAAAAATGATCTCGGCGACACTCAGTTTTATCTTGCCGCTAGGAGGTTGCGACCGTTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

16.73

Weight (kDa)

8.43

Isoelectric Point (pI)

43.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16510 AT4G16510
fragaria_vesca	FvH4_2g25460 FvH4_3g26313 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g26851 FvH4_5g38900 FvH4_6g19840 FvH4_6g26281 FvH4_7g10800
malus_domestica	MD00G1115100.v1.1 MD06G1061300.v1.1
prunus_persica	Prupe.5G072600_v2.0.a1
pyrus_communis	pycom06g05140
rosa_chinensis	RchiOBHm_Chr1g0333271 RchiOBHm_Chr2g0095921 RchiOBHm_Chr2g0099411 RchiOBHm_Chr7g0202881 RchiOBHm_Chr7g0233531
rosa_laevigata	RLG00000003567 RLG00000033632
rosa_multiflora	Rmu_sc0003729.1_g000007 Rmu_sc0033032.1_g000002
rosa_roxburghii	Rroxscaffold_1G00038270 Rroxscaffold_2G00110700 Rroxscaffold_3G00254210
rosa_rugosa	Rorug07G0073500
rosa_samantha	Rh2DG104700 Rh2DG133400 Rh7AG201300 Rh7BG201700 Rh7CG212800 Rh7DG208300
rosa_wichuraiana	Rw7G017610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	234
AciI	CCGC	3 cut(s)	123, 251, 435
AclWI	GGATC	3 cut(s)	206, 288, 301
AfiI	CCNNNNNNNGG	4 cut(s)	23, 145, 314, 441
AgsI	TTSAA	2 cut(s)	49, 192
AjuI	GAANNNNNNNTTGG	2 cut(s)	146, 178
AluBI	AGCT	2 cut(s)	106, 256
AluI	AGCT	2 cut(s)	106, 256
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	3 cut(s)	206, 288, 301
ApeKI	GCWGC	4 cut(s)	5, 253, 264, 318
AspS9I	GGNCC	1 cut(s)	248
AsuC2I	CCSGG	1 cut(s)	140
AvaII	GGWCC	1 cut(s)	248
BamHI	GGATCC	1 cut(s)	293
BanI	GGYRCC	1 cut(s)	234
BbvI	GCAGC	3 cut(s)	265, 276, 305
BccI	CCATC	4 cut(s)	43, 61, 234, 284
BceAI	ACGGC	2 cut(s)	331, 379
BcnI	CCSGG	1 cut(s)	140
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	3 cut(s)	126, 171, 438
BisI	GCNGC	6 cut(s)	6, 123, 254, 265, 319, 435
BlsI	GCNGC	6 cut(s)	7, 124, 255, 266, 320, 436
Bme1390I	CCNGG	1 cut(s)	140
Bme18I	GGWCC	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	248
BmiI	GGNNCC	3 cut(s)	144, 236, 295
BmrFI	CCNGG	1 cut(s)	140
BpuMI	CCSGG	1 cut(s)	140
BsaI	GGTCTC	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	4 cut(s)	23, 145, 314, 441
Bse118I	RCCGGY	2 cut(s)	145, 237
Bse3DI	GCAATG	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	138
BseLI	CCNNNNNNNGG	4 cut(s)	23, 145, 314, 441
BseMI	GCAATG	1 cut(s)	297
BseMII	CTCAG	1 cut(s)	434
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	3 cut(s)	265, 276, 305
Bsh1285I	CGRYCG	1 cut(s)	452
BshNI	GGYRCC	1 cut(s)	234
BsiEI	CGRYCG	1 cut(s)	452
BsiSI	CCGG	3 cut(s)	140, 146, 238
BslFI	GGGAC	1 cut(s)	121
BslI	CCNNNNNNNGG	4 cut(s)	23, 145, 314, 441
BsmAI	GTCTC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	121
Bso31I	GGTCTC	1 cut(s)	32
Bsp143I	GATC	3 cut(s)	211, 293, 406
BspACI	CCGC	3 cut(s)	123, 251, 435
BspCNI	CTCAG	1 cut(s)	433
BspLI	GGNNCC	3 cut(s)	144, 236, 295
BspPI	GGATC	3 cut(s)	206, 288, 301
BspT107I	GGYRCC	1 cut(s)	234
BspTNI	GGTCTC	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	297
BsrFI	RCCGGY	2 cut(s)	145, 237
BssAI	RCCGGY	2 cut(s)	145, 237
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	3 cut(s)	211, 293, 406
Bst4CI	ACNGT	1 cut(s)	453
Bst6I	CTCTTC	2 cut(s)	45, 50
BstC8I	GCNNGC	1 cut(s)	269
BstDEI	CTNAG	1 cut(s)	420
BstKTI	GATC	3 cut(s)	214, 296, 409
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	3 cut(s)	211, 293, 406
BstMCI	CGRYCG	1 cut(s)	452
BstSCI	CCNGG	1 cut(s)	138
BstV1I	GCAGC	3 cut(s)	265, 276, 305
BstX2I	RGATCY	2 cut(s)	211, 293
BstYI	RGATCY	2 cut(s)	211, 293
Cac8I	GCNNGC	1 cut(s)	269
Cfr10I	RCCGGY	2 cut(s)	145, 237
Cfr13I	GGNCC	1 cut(s)	248
CseI	GACGC	1 cut(s)	176
CviAII	CATG	2 cut(s)	230, 260
CviJI	RGCY	6 cut(s)	5, 106, 149, 256, 318, 366
CviKI_1	RGCY	6 cut(s)	5, 106, 149, 256, 318, 366
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	3 cut(s)	213, 295, 408
DpnII	GATC	3 cut(s)	211, 293, 406
Eam1104I	CTCTTC	2 cut(s)	45, 50
EarI	CTCTTC	2 cut(s)	45, 50
Eco31I	GGTCTC	1 cut(s)	32
Eco47I	GGWCC	1 cut(s)	248
FaeI	CATG	2 cut(s)	233, 263
FaiI	YATR	4 cut(s)	231, 261, 350, 389
FaqI	GGGAC	1 cut(s)	121
FatI	CATG	2 cut(s)	229, 259
Fnu4HI	GCNGC	6 cut(s)	6, 123, 254, 265, 319, 435
Fsp4HI	GCNGC	6 cut(s)	6, 123, 254, 265, 319, 435
FspBI	CTAG	3 cut(s)	126, 171, 438
GluI	GCNGC	6 cut(s)	6, 123, 254, 265, 319, 435
HapII	CCGG	3 cut(s)	140, 146, 238
HgaI	GACGC	1 cut(s)	176
Hin1II	CATG	2 cut(s)	233, 263
HinfI	GANTC	1 cut(s)	222
HpaII	CCGG	3 cut(s)	140, 146, 238
Hpy188I	TCNGA	1 cut(s)	153
Hpy99I	CGWCG	3 cut(s)	290, 317, 400
HpyAV	CCTTC	1 cut(s)	239
HpyCH4III	ACNGT	1 cut(s)	453
HpyCH4IV	ACGT	1 cut(s)	134
HpyCH4V	TGCA	1 cut(s)	302
HpyF3I	CTNAG	1 cut(s)	420
HpySE526I	ACGT	1 cut(s)	134
Hsp92II	CATG	2 cut(s)	233, 263
Kzo9I	GATC	3 cut(s)	211, 293, 406
LmnI	GCTCC	1 cut(s)	111
LpnPI	CCDG	5 cut(s)	9, 153, 159, 194, 251
Lsp1109I	GCAGC	3 cut(s)	265, 276, 305
MaeI	CTAG	3 cut(s)	126, 171, 438
MaeII	ACGT	1 cut(s)	134
MalI	GATC	3 cut(s)	213, 295, 408
MboI	GATC	3 cut(s)	211, 293, 406
MboII	GAAGA	2 cut(s)	32, 37
MflI	RGATCY	2 cut(s)	211, 293
MluCI	AATT	1 cut(s)	94
MnlI	CCTC	4 cut(s)	41, 97, 124, 435
MspI	CCGG	3 cut(s)	140, 146, 238
MspR9I	CCNGG	1 cut(s)	140
NciI	CCSGG	1 cut(s)	140
NdeII	GATC	3 cut(s)	211, 293, 406
NlaIII	CATG	2 cut(s)	233, 263
NlaIV	GGNNCC	3 cut(s)	144, 236, 295
NmeAIII	GCCGAG	1 cut(s)	390
PfeI	GAWTC	1 cut(s)	222
PflFI	GACNNNGTC	1 cut(s)	181
PkrI	GCNGC	6 cut(s)	7, 124, 255, 266, 320, 436
PspN4I	GGNNCC	3 cut(s)	144, 236, 295
PspPI	GGNCC	1 cut(s)	248
PsuI	RGATCY	2 cut(s)	211, 293
PsyI	GACNNNGTC	1 cut(s)	181
SatI	GCNGC	6 cut(s)	6, 123, 254, 265, 319, 435
Sau3AI	GATC	3 cut(s)	211, 293, 406
Sau96I	GGNCC	1 cut(s)	248
ScrFI	CCNGG	1 cut(s)	140
SetI	ASST	6 cut(s)	28, 108, 137, 250, 258, 446
SinI	GGWCC	1 cut(s)	248
Sse9I	AATT	1 cut(s)	94
SsiI	CCGC	3 cut(s)	123, 251, 435
SspMI	CTAG	3 cut(s)	126, 171, 438
StyD4I	CCNGG	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	453
TaiI	ACGT	1 cut(s)	137
TaqI	TCGA	1 cut(s)	398
TasI	AATT	1 cut(s)	94
TauI	GCSGC	2 cut(s)	125, 437
TfiI	GAWTC	1 cut(s)	222
TseI	GCWGC	4 cut(s)	5, 253, 264, 318
TspDTI	ATGAA	1 cut(s)	248
TspGWI	ACGGA	1 cut(s)	106
Tth111I	GACNNNGTC	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	248
XspI	CTAG	3 cut(s)	126, 171, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.