Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002840

Physical Location & Seq

Genomic Coordinates Reverse (-)

11247846 .. 11248163

Gene Structure 318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG133400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGACTTTAGAATGACCCAGTCCCTTCGAGGGACAAGTGTGTGGGGAGATCGGCAGAGATTCCACCATGGGTGCCGGATAGAAGGCTTGCAGCCTCATGCTACCGAGCAGGGGAAGGAAGACGGCGAAGGATCTATCTCGACCTCTACGAAGGCGGCGTCTTTCCTAATGGCGAAGATGTGTTCTATGTGGTTCTCGGTTACCACCGACCTGGGCTGGGCCCTTGTATTTCTAGGTTGTTTATTGGGCCATGTTTGGACCCATTGTTTCTGTTGTATGTGTATCCCTTATGGATTTGTTTGTATCTCTCTGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

105

Amino Acids

11.76

Weight (kDa)

6.48

Isoelectric Point (pI)

30.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16510 AT4G16510
fragaria_vesca	FvH4_2g25460 FvH4_3g26313 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g26851 FvH4_5g38900 FvH4_6g19840 FvH4_6g26281 FvH4_7g10800
malus_domestica	MD00G1115100.v1.1 MD06G1061300.v1.1
prunus_persica	Prupe.5G072600_v2.0.a1
pyrus_communis	pycom06g05140
rosa_chinensis	RchiOBHm_Chr1g0333271 RchiOBHm_Chr2g0095921 RchiOBHm_Chr2g0099411 RchiOBHm_Chr7g0202881 RchiOBHm_Chr7g0233531
rosa_laevigata	RLG00000003567 RLG00000033632
rosa_multiflora	Rmu_sc0003729.1_g000007 Rmu_sc0033032.1_g000002
rosa_roxburghii	Rroxscaffold_1G00038270 Rroxscaffold_2G00110700 Rroxscaffold_3G00254210
rosa_rugosa	Rorug07G0073500
rosa_samantha	Rh2DG104700 Rh2DG133400 Rh7AG201300 Rh7BG201700 Rh7CG212800 Rh7DG208300
rosa_wichuraiana	Rw7G017610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	72
AciI	CCGC	1 cut(s)	155
AclWI	GGATC	1 cut(s)	139
AcyI	GRCGYC	1 cut(s)	158
AfiI	CCNNNNNNNGG	3 cut(s)	30, 111, 217
AjnI	CCWGG	1 cut(s)	210
AlwI	GGATC	1 cut(s)	139
AoxI	GGCC	2 cut(s)	219, 247
ApaI	GGGCCC	1 cut(s)	223
ApeKI	GCWGC	1 cut(s)	91
ArsI	GACNNNNNNTTYG	2 cut(s)	143, 175
AspS9I	GGNCC	4 cut(s)	219, 220, 247, 258
AvaII	GGWCC	1 cut(s)	258
BaeGI	GKGCMC	1 cut(s)	223
BanI	GGYRCC	1 cut(s)	72
BanII	GRGCYC	1 cut(s)	223
BbsI	GAAGAC	1 cut(s)	126
BbvI	GCAGC	1 cut(s)	103
BceAI	ACGGC	1 cut(s)	139
BciT130I	CCWGG	1 cut(s)	212
BciVI	GTATCC	1 cut(s)	293
BfaI	CTAG	2 cut(s)	233, 316
BfuI	GTATCC	1 cut(s)	293
BisI	GCNGC	2 cut(s)	92, 156
BlsI	GCNGC	2 cut(s)	93, 157
Bme1390I	CCNGG	1 cut(s)	212
Bme18I	GGWCC	1 cut(s)	258
BmgT120I	GGNCC	4 cut(s)	219, 220, 247, 258
BmiI	GGNNCC	3 cut(s)	74, 221, 260
BmrFI	CCNGG	1 cut(s)	212
BmrI	ACTGGG	1 cut(s)	13
BmuI	ACTGGG	1 cut(s)	13
BpiI	GAAGAC	1 cut(s)	126
BsaHI	GRCGYC	1 cut(s)	158
BsaJI	CCNNGG	2 cut(s)	67, 211
Bsc4I	CCNNNNNNNGG	3 cut(s)	30, 111, 217
Bse1I	ACTGG	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	2 cut(s)	67, 211
BseLI	CCNNNNNNNGG	3 cut(s)	30, 111, 217
BseNI	ACTGG	1 cut(s)	19
BseSI	GKGCMC	1 cut(s)	223
BseXI	GCAGC	1 cut(s)	103
BseYI	CCCAGC	1 cut(s)	216
BshFI	GGCC	2 cut(s)	221, 249
BshNI	GGYRCC	1 cut(s)	72
BsiSI	CCGG	1 cut(s)	76
BslFI	GGGAC	2 cut(s)	7, 46
BslI	CCNNNNNNNGG	3 cut(s)	30, 111, 217
BsmFI	GGGAC	2 cut(s)	7, 46
BsnI	GGCC	2 cut(s)	221, 249
Bsp120I	GGGCCC	1 cut(s)	219
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	2 cut(s)	49, 131
Bsp19I	CCATGG	1 cut(s)	67
BspACI	CCGC	1 cut(s)	155
BspANI	GGCC	2 cut(s)	221, 249
BspLI	GGNNCC	3 cut(s)	74, 221, 260
BspPI	GGATC	1 cut(s)	139
BspT107I	GGYRCC	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	19
BssECI	CCNNGG	2 cut(s)	67, 211
BssMI	GATC	2 cut(s)	49, 131
BssNI	GRCGYC	1 cut(s)	158
BssT1I	CCWWGG	1 cut(s)	67
Bst2UI	CCWGG	1 cut(s)	212
BstACI	GRCGYC	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	89
BstDSI	CCRYGG	1 cut(s)	67
BstEII	GGTNACC	1 cut(s)	199
BstKTI	GATC	2 cut(s)	52, 134
BstMBI	GATC	2 cut(s)	49, 131
BstNI	CCWGG	1 cut(s)	212
BstPI	GGTNACC	1 cut(s)	199
BstSCI	CCNGG	1 cut(s)	210
BstSLI	GKGCMC	1 cut(s)	223
BstV1I	GCAGC	1 cut(s)	103
BstV2I	GAAGAC	1 cut(s)	126
BstX2I	RGATCY	1 cut(s)	131
BstXI	CCANNNNNNTGG	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	131
BsuI	GTATCC	1 cut(s)	293
BsuRI	GGCC	2 cut(s)	221, 249
BtgI	CCRYGG	1 cut(s)	67
Cac8I	GCNNGC	1 cut(s)	89
Cfr13I	GGNCC	4 cut(s)	219, 220, 247, 258
CseI	GACGC	1 cut(s)	147
CviAII	CATG	3 cut(s)	68, 98, 251
CviJI	RGCY	5 cut(s)	87, 94, 216, 221, 249
CviKI_1	RGCY	5 cut(s)	87, 94, 216, 221, 249
DpnI	GATC	2 cut(s)	51, 133
DpnII	GATC	2 cut(s)	49, 131
Eco130I	CCWWGG	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	258
Eco91I	GGTNACC	1 cut(s)	199
EcoO109I	RGGNCCY	1 cut(s)	220
EcoO65I	GGTNACC	1 cut(s)	199
EcoRII	CCWGG	1 cut(s)	210
EcoT14I	CCWWGG	1 cut(s)	67
EcoT38I	GRGCYC	1 cut(s)	223
ErhI	CCWWGG	1 cut(s)	67
FaeI	CATG	3 cut(s)	71, 101, 254
FaiI	YATR	6 cut(s)	69, 99, 188, 252, 278, 291
FaqI	GGGAC	2 cut(s)	7, 46
FatI	CATG	3 cut(s)	67, 97, 250
Fnu4HI	GCNGC	2 cut(s)	92, 156
FriOI	GRGCYC	1 cut(s)	223
Fsp4HI	GCNGC	2 cut(s)	92, 156
FspBI	CTAG	2 cut(s)	233, 316
GluI	GCNGC	2 cut(s)	92, 156
GsaI	CCCAGC	1 cut(s)	220
HaeIII	GGCC	2 cut(s)	221, 249
HapII	CCGG	1 cut(s)	76
HgaI	GACGC	1 cut(s)	147
Hin1I	GRCGYC	1 cut(s)	158
Hin1II	CATG	3 cut(s)	71, 101, 254
HinfI	GANTC	1 cut(s)	60
HpaII	CCGG	1 cut(s)	76
Hpy188III	TCNNGA	2 cut(s)	139, 311
HpyAV	CCTTC	5 cut(s)	35, 77, 109, 122, 145
HpyCH4V	TGCA	1 cut(s)	91
Hsp92I	GRCGYC	1 cut(s)	158
Hsp92II	CATG	3 cut(s)	71, 101, 254
Kzo9I	GATC	2 cut(s)	49, 131
LpnPI	CCDG	7 cut(s)	32, 89, 95, 197, 202, 224, 296
Lsp1109I	GCAGC	1 cut(s)	103
MaeI	CTAG	2 cut(s)	233, 316
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	2 cut(s)	51, 133
MboI	GATC	2 cut(s)	49, 131
MboII	GAAGA	2 cut(s)	131, 187
MflI	RGATCY	1 cut(s)	131
MhlI	GDGCHC	1 cut(s)	223
MnlI	CCTC	3 cut(s)	23, 105, 154
MspI	CCGG	1 cut(s)	76
MspR9I	CCNGG	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	212
NcoI	CCATGG	1 cut(s)	67
NdeII	GATC	2 cut(s)	49, 131
NlaIII	CATG	3 cut(s)	71, 101, 254
NlaIV	GGNNCC	3 cut(s)	74, 221, 260
PcsI	WCGNNNNNNNCGW	2 cut(s)	146, 155
PfeI	GAWTC	1 cut(s)	60
PflFI	GACNNNGTC	1 cut(s)	19
PkrI	GCNGC	2 cut(s)	93, 157
Psp6I	CCWGG	1 cut(s)	210
PspEI	GGTNACC	1 cut(s)	199
PspFI	CCCAGC	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	3 cut(s)	74, 221, 260
PspOMI	GGGCCC	1 cut(s)	219
PspPI	GGNCC	4 cut(s)	219, 220, 247, 258
PsuI	RGATCY	1 cut(s)	131
PsyI	GACNNNGTC	1 cut(s)	19
SatI	GCNGC	2 cut(s)	92, 156
Sau3AI	GATC	2 cut(s)	49, 131
Sau96I	GGNCC	4 cut(s)	219, 220, 247, 258
ScrFI	CCNGG	1 cut(s)	212
SduI	GDGCHC	1 cut(s)	223
SetI	ASST	3 cut(s)	146, 213, 238
SinI	GGWCC	1 cut(s)	258
SsiI	CCGC	1 cut(s)	155
SspMI	CTAG	2 cut(s)	233, 316
StyD4I	CCNGG	1 cut(s)	210
StyI	CCWWGG	1 cut(s)	67
TaqI	TCGA	2 cut(s)	28, 140
TauI	GCSGC	1 cut(s)	158
TfiI	GAWTC	1 cut(s)	60
TseI	GCWGC	1 cut(s)	91
Tth111I	GACNNNGTC	1 cut(s)	19
VpaK11BI	GGWCC	1 cut(s)	258
XspI	CTAG	2 cut(s)	233, 316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.