Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002840

Physical Location & Seq

Genomic Coordinates Reverse (-)

8725210 .. 8729839

Gene Structure 4630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G072600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGAAAAATCACTAGCAGAGCTGGAGCGATTCCAAACCCAAATCCTAGAACGCATATCAAAGTTCGAGCTCGCCTCCTCTGCCTCTCTTCCCCAACACAGCTCTACCCCCATCCCTACCTCGACTCAAAACGACGCCATCGGCGCCACAGAAGCTCGTCTCTCCGCCATTCTCCGCGCCAATGGCGTGAAAGACTTCGCCTTCAAGAGGGTACCTGCCGATTACTACGATTGGTCTCTCGATGACCGGCGCGACGTTCTCGGCGCCGCCTCCGTCCACCATCTCTGCAAAAGCATTGTCTTGGTTAACACTCAAGCCCAATCTAGTGTGGTTGATTGTAGTGACCGCAACAATTCAAAGTATTATGTTGTGGTCGTTCAGTATACTGCTCGGTTTAATGCTGAAGCTGTAAAGAACTTCTTGTATTCGCTCAACGAGGGGAAGATAGCCAAGAAAAAGTTCAACTTGAGGCTTGCACCTGAGGAAACTTCAGTAGAATTGACTGGATTTGAGCACAACGGAGTTACATGTGTTGGCATGAAAACAGGCATTCCGGTGATCTTGGATGAAGCAATTCAGAAACTTAGTCCTGATTTCTTCTGGTTGGGGGGTGGCGAGATCGATCTGAAGCTGGGCATCAGAACCTCTGAATTTATAAACTTCGTTAAACCTTTTATTGTCAGCTGCAGCAGTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_edit

Protein Analysis

233

Amino Acids

25.72

Weight (kDa)

6.44

Isoelectric Point (pI)

26.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16510 AT4G16510
fragaria_vesca	FvH4_2g25460 FvH4_3g26313 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g26851 FvH4_5g38900 FvH4_6g19840 FvH4_6g26281 FvH4_7g10800
malus_domestica	MD00G1115100.v1.1 MD06G1061300.v1.1
prunus_persica	Prupe.5G072600_v2.0.a1
pyrus_communis	pycom06g05140
rosa_chinensis	RchiOBHm_Chr1g0333271 RchiOBHm_Chr2g0095921 RchiOBHm_Chr2g0099411 RchiOBHm_Chr7g0202881 RchiOBHm_Chr7g0233531
rosa_laevigata	RLG00000003567 RLG00000033632
rosa_multiflora	Rmu_sc0003729.1_g000007 Rmu_sc0033032.1_g000002
rosa_roxburghii	Rroxscaffold_1G00038270 Rroxscaffold_2G00110700 Rroxscaffold_3G00254210
rosa_rugosa	Rorug07G0073500
rosa_samantha	Rh2DG104700 Rh2DG133400 Rh7AG201300 Rh7BG201700 Rh7CG212800 Rh7DG208300
rosa_wichuraiana	Rw7G017610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	656
Acc36I	ACCTGC	1 cut(s)	223
Acc65I	GGTACC	1 cut(s)	211
AccB1I	GGYRCC	3 cut(s)	143, 211, 263
AccI	GTMKAC	1 cut(s)	383
AccII	CGCG	2 cut(s)	177, 252
AciI	CCGC	4 cut(s)	165, 175, 267, 346
AcsI	RAATTY	1 cut(s)	650
AcuI	CTGAAG	3 cut(s)	423, 474, 647
AcyI	GRCGYC	3 cut(s)	135, 144, 264
AfaI	GTAC	2 cut(s)	213, 694
AfiI	CCNNNNNNNGG	1 cut(s)	207
AflIII	ACRYGT	1 cut(s)	527
AgsI	TTSAA	3 cut(s)	205, 357, 463
AjuI	GAANNNNNNNTTGG	2 cut(s)	443, 475
AluBI	AGCT	7 cut(s)	22, 70, 102, 155, 407, 631, 684
AluI	AGCT	7 cut(s)	22, 70, 102, 155, 407, 631, 684
Alw21I	GWGCWC	2 cut(s)	72, 516
Alw26I	GTCTC	2 cut(s)	164, 240
ApeKI	GCWGC	2 cut(s)	684, 687
ApoI	RAATTY	1 cut(s)	650
ArsI	GACNNNNNNTTYG	2 cut(s)	282, 314
Asp700I	GAANNNNTTC	3 cut(s)	194, 458, 573
Asp718I	GGTACC	1 cut(s)	211
AspLEI	GCGC	4 cut(s)	146, 179, 252, 266
AsuHPI	GGTGA	1 cut(s)	568
AxyI	CCTNAGG	1 cut(s)	480
BanI	GGYRCC	3 cut(s)	143, 211, 263
BanII	GRGCYC	1 cut(s)	72
Bbv12I	GWGCWC	2 cut(s)	72, 516
BbvI	GCAGC	1 cut(s)	671
BccI	CCATC	3 cut(s)	119, 146, 288
BcoDI	GTCTC	2 cut(s)	164, 240
BfaI	CTAG	3 cut(s)	14, 47, 324
BfmI	CTRYAG	1 cut(s)	685
BfoI	RGCGCY	2 cut(s)	147, 267
BfuAI	ACCTGC	1 cut(s)	223
BisI	GCNGC	3 cut(s)	267, 685, 688
BlsI	GCNGC	3 cut(s)	268, 686, 689
BmcAI	AGTACT	1 cut(s)	694
BmiI	GGNNCC	3 cut(s)	145, 213, 265
BmsI	GCATC	1 cut(s)	645
BplI	GAGNNNNNCTC	2 cut(s)	59, 91
BpmI	CTGGAG	1 cut(s)	44
BpuEI	CTTGAG	2 cut(s)	297, 487
Bsa29I	ATCGAT	1 cut(s)	621
BsaHI	GRCGYC	3 cut(s)	135, 144, 264
BsaI	GGTCTC	1 cut(s)	240
BsaWI	WCCGGW	1 cut(s)	553
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse118I	RCCGGY	1 cut(s)	246
Bse1I	ACTGG	1 cut(s)	508
Bse21I	CCTNAGG	1 cut(s)	480
BseCI	ATCGAT	1 cut(s)	621
BseGI	GGATG	2 cut(s)	111, 571
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMII	CTCAG	1 cut(s)	471
BseNI	ACTGG	1 cut(s)	508
BseRI	GAGGAG	1 cut(s)	67
BseXI	GCAGC	1 cut(s)	671
BseYI	CCCAGC	1 cut(s)	631
Bsh1236I	CGCG	2 cut(s)	177, 252
BshNI	GGYRCC	3 cut(s)	143, 211, 263
BshVI	ATCGAT	1 cut(s)	621
BsiHKAI	GWGCWC	2 cut(s)	72, 516
BsiSI	CCGG	2 cut(s)	247, 554
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmAI	GTCTC	2 cut(s)	164, 240
BsmBI	CGTCTC	1 cut(s)	164
BsmI	GAATGC	1 cut(s)	549
Bso31I	GGTCTC	1 cut(s)	240
Bsp1286I	GDGCHC	2 cut(s)	72, 516
Bsp143I	GATC	3 cut(s)	558, 618, 622
BspACI	CCGC	4 cut(s)	165, 175, 267, 346
BspCNI	CTCAG	1 cut(s)	472
BspDI	ATCGAT	1 cut(s)	621
BspFNI	CGCG	2 cut(s)	177, 252
BspLI	GGNNCC	3 cut(s)	145, 213, 265
BspMAI	CTGCAG	1 cut(s)	689
BspMI	ACCTGC	1 cut(s)	223
BspT107I	GGYRCC	3 cut(s)	143, 211, 263
BspTNI	GGTCTC	1 cut(s)	240
BsrFI	RCCGGY	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	508
BssAI	RCCGGY	1 cut(s)	246
BssMI	GATC	3 cut(s)	558, 618, 622
BssNAI	GTATAC	1 cut(s)	384
BssNI	GRCGYC	3 cut(s)	135, 144, 264
Bst1107I	GTATAC	1 cut(s)	384
Bst6I	CTCTTC	1 cut(s)	93
BstACI	GRCGYC	3 cut(s)	135, 144, 264
BstC8I	GCNNGC	2 cut(s)	72, 474
BstDEI	CTNAG	2 cut(s)	480, 584
BstENI	CCTNNNNNAGG	1 cut(s)	205
BstF5I	GGATG	2 cut(s)	111, 571
BstFNI	CGCG	2 cut(s)	177, 252
BstH2I	RGCGCY	2 cut(s)	147, 267
BstHHI	GCGC	4 cut(s)	146, 179, 252, 266
BstKTI	GATC	3 cut(s)	561, 621, 625
BstMAI	GTCTC	2 cut(s)	164, 240
BstMBI	GATC	3 cut(s)	558, 618, 622
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 143, 152, 183
BstNSI	RCATGY	1 cut(s)	531
BstSFI	CTRYAG	1 cut(s)	685
BstUI	CGCG	2 cut(s)	177, 252
BstV1I	GCAGC	1 cut(s)	671
BstZ17I	GTATAC	1 cut(s)	384
Bsu15I	ATCGAT	1 cut(s)	621
Bsu36I	CCTNAGG	1 cut(s)	480
BsuTUI	ATCGAT	1 cut(s)	621
BtsCI	GGATG	2 cut(s)	111, 571
BveI	ACCTGC	1 cut(s)	223
Cac8I	GCNNGC	2 cut(s)	72, 474
CfoI	GCGC	4 cut(s)	146, 179, 252, 266
Cfr10I	RCCGGY	1 cut(s)	246
ClaI	ATCGAT	1 cut(s)	621
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	2 cut(s)	212, 693
CviAII	CATG	2 cut(s)	528, 538
CviQI	GTAC	2 cut(s)	212, 693
DdeI	CTNAG	2 cut(s)	480, 584
DinI	GGCGCC	2 cut(s)	145, 265
DpnI	GATC	3 cut(s)	560, 620, 624
DpnII	GATC	3 cut(s)	558, 618, 622
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
EciI	GGCGGA	1 cut(s)	154
Ecl136II	GAGCTC	1 cut(s)	70
Eco24I	GRGCYC	1 cut(s)	72
Eco31I	GGTCTC	1 cut(s)	240
Eco53kI	GAGCTC	1 cut(s)	70
Eco57I	CTGAAG	3 cut(s)	423, 474, 647
Eco81I	CCTNAGG	1 cut(s)	480
EcoICRI	GAGCTC	1 cut(s)	70
EcoNI	CCTNNNNNAGG	1 cut(s)	205
EcoT38I	GRGCYC	1 cut(s)	72
EgeI	GGCGCC	2 cut(s)	145, 265
EheI	GGCGCC	2 cut(s)	145, 265
Esp3I	CGTCTC	1 cut(s)	164
FaeI	CATG	2 cut(s)	531, 541
FaiI	YATR	6 cut(s)	56, 366, 384, 529, 539, 656
FalI	AAGNNNNNCTT	4 cut(s)	404, 436, 449, 481
FatI	CATG	2 cut(s)	527, 537
FblI	GTMKAC	1 cut(s)	383
Fnu4HI	GCNGC	3 cut(s)	267, 685, 688
FokI	GGATG	2 cut(s)	98, 578
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	3 cut(s)	267, 685, 688
FspBI	CTAG	3 cut(s)	14, 47, 324
GlaI	GCGC	4 cut(s)	145, 178, 251, 265
GluI	GCNGC	3 cut(s)	267, 685, 688
GsaI	CCCAGC	1 cut(s)	635
GsuI	CTGGAG	1 cut(s)	44
HaeII	RGCGCY	2 cut(s)	147, 267
HapII	CCGG	2 cut(s)	247, 554
HgaI	GACGC	1 cut(s)	143
HhaI	GCGC	4 cut(s)	146, 179, 252, 266
Hin1I	GRCGYC	3 cut(s)	135, 144, 264
Hin1II	CATG	2 cut(s)	531, 541
Hin6I	GCGC	4 cut(s)	144, 177, 250, 264
HinP1I	GCGC	4 cut(s)	144, 177, 250, 264
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	2 cut(s)	30, 124
HpaI	GTTAAC	1 cut(s)	307
HpaII	CCGG	2 cut(s)	247, 554
HphI	GGTGA	1 cut(s)	568
Hpy166II	GTNNAC	3 cut(s)	277, 307, 384
Hpy188I	TCNGA	4 cut(s)	579, 627, 641, 649
Hpy188III	TCNNGA	3 cut(s)	205, 239, 590
Hpy8I	GTNNAC	3 cut(s)	277, 307, 384
Hpy99I	CGWCG	2 cut(s)	137, 257
HpyAV	CCTTC	1 cut(s)	211
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	3 cut(s)	288, 476, 687
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 143, 152, 183
HpyF3I	CTNAG	2 cut(s)	480, 584
HpySE526I	ACGT	1 cut(s)	255
Hsp92I	GRCGYC	3 cut(s)	135, 144, 264
Hsp92II	CATG	2 cut(s)	531, 541
HspAI	GCGC	4 cut(s)	144, 177, 250, 264
KasI	GGCGCC	2 cut(s)	143, 263
KpnI	GGTACC	1 cut(s)	215
KspAI	GTTAAC	1 cut(s)	307
Kzo9I	GATC	3 cut(s)	558, 618, 622
LmnI	GCTCC	1 cut(s)	25
Lsp1109I	GCAGC	1 cut(s)	671
LweI	GCATC	1 cut(s)	645
MaeI	CTAG	3 cut(s)	14, 47, 324
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	2 cut(s)	341, 523
MalI	GATC	3 cut(s)	560, 620, 624
MboI	GATC	3 cut(s)	558, 618, 622
MboII	GAAGA	3 cut(s)	80, 454, 589
MhlI	GDGCHC	2 cut(s)	72, 516
MluCI	AATT	4 cut(s)	352, 497, 573, 650
Mly113I	GGCGCC	2 cut(s)	144, 264
MlyI	GAGTC	1 cut(s)	118
MroXI	GAANNNNTTC	3 cut(s)	194, 458, 573
MseI	TTAA	3 cut(s)	306, 396, 666
MslI	CAYNNNNRTG	1 cut(s)	554
MspA1I	CMGCKG	1 cut(s)	684
MspI	CCGG	2 cut(s)	247, 554
Mva1269I	GAATGC	1 cut(s)	549
MvnI	CGCG	2 cut(s)	177, 252
MwoI	GCNNNNNNNGC	4 cut(s)	80, 143, 152, 183
NarI	GGCGCC	2 cut(s)	144, 264
NdeII	GATC	3 cut(s)	558, 618, 622
NlaIII	CATG	2 cut(s)	531, 541
NlaIV	GGNNCC	3 cut(s)	145, 213, 265
NmeAIII	GCCGAG	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	341
NspI	RCATGY	1 cut(s)	531
PciI	ACATGT	1 cut(s)	527
PctI	GAATGC	1 cut(s)	549
PdmI	GAANNNNTTC	3 cut(s)	194, 458, 573
PfeI	GAWTC	1 cut(s)	30
PkrI	GCNGC	3 cut(s)	268, 686, 689
PleI	GAGTC	1 cut(s)	118
PluTI	GGCGCC	2 cut(s)	147, 267
PpsI	GAGTC	1 cut(s)	118
PscI	ACATGT	1 cut(s)	527
PsiI	TTATAA	1 cut(s)	656
Psp124BI	GAGCTC	1 cut(s)	72
PspFI	CCCAGC	1 cut(s)	631
PspN4I	GGNNCC	3 cut(s)	145, 213, 265
PstI	CTGCAG	1 cut(s)	689
PvuII	CAGCTG	1 cut(s)	684
RsaI	GTAC	2 cut(s)	213, 694
RsaNI	GTAC	2 cut(s)	212, 693
RseI	CAYNNNNRTG	1 cut(s)	554
SacI	GAGCTC	1 cut(s)	72
SaqAI	TTAA	3 cut(s)	306, 396, 666
SatI	GCNGC	3 cut(s)	267, 685, 688
Sau3AI	GATC	3 cut(s)	558, 618, 622
ScaI	AGTACT	1 cut(s)	694
SchI	GAGTC	1 cut(s)	118
SduI	GDGCHC	2 cut(s)	72, 516
SfaNI	GCATC	1 cut(s)	645
SfcI	CTRYAG	1 cut(s)	685
SfoI	GGCGCC	2 cut(s)	145, 265
SmiMI	CAYNNNNRTG	1 cut(s)	554
SmlI	CTYRAG	2 cut(s)	312, 466
SmoI	CTYRAG	2 cut(s)	312, 466
Sse9I	AATT	4 cut(s)	352, 497, 573, 650
SsiI	CCGC	4 cut(s)	165, 175, 267, 346
SspDI	GGCGCC	2 cut(s)	143, 263
SspMI	CTAG	3 cut(s)	14, 47, 324
SstI	GAGCTC	1 cut(s)	72
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	4 cut(s)	66, 122, 240, 621
TasI	AATT	4 cut(s)	352, 497, 573, 650
TatI	WGTACW	1 cut(s)	692
TauI	GCSGC	1 cut(s)	269
TfiI	GAWTC	1 cut(s)	30
Tru1I	TTAA	3 cut(s)	306, 396, 666
Tru9I	TTAA	3 cut(s)	306, 396, 666
TseFI	GTSAC	1 cut(s)	341
TseI	GCWGC	2 cut(s)	684, 687
Tsp45I	GTSAC	1 cut(s)	341
TspDTI	ATGAA	2 cut(s)	554, 582
TspGWI	ACGGA	2 cut(s)	262, 534
XagI	CCTNNNNNAGG	1 cut(s)	205
XapI	RAATTY	1 cut(s)	650
XceI	RCATGY	1 cut(s)	531
XmiI	GTMKAC	1 cut(s)	383
XmnI	GAANNNNTTC	3 cut(s)	194, 458, 573
XspI	CTAG	3 cut(s)	14, 47, 324
ZrmI	AGTACT	1 cut(s)	694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.