Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002840

Physical Location & Seq

Genomic Coordinates Reverse (-)

19300330 .. 19300921

Gene Structure 592 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g26313.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAGTAAAAATAGGGTCTTGTGTCACATATATCCCTTCCATCACGGCTTGGATCTCCAAGGACACGCGTCATCTCAACTAAGCAAAGGCTTGTCCTCTGCCTCTCGCTGGATTGATTCAGCAATCAAGGATGAAAATATTCCACGGACAATTCATCAAAAACTCCTTCAAACTAAGTCTAAAGACGAAGTCTCGAATGGAGGAGAATCGGTGTCTAGGACATTGAAGAAGGCCATCAAAGTTGGTGGTTTAGAGTTTATGGTTGTTGTGCTCGATGGTGGAGGGCGAATAGCTGAGTCATGGGAGAAGATGTTCCACTTGCTAATGCCGGAGATTATTGTGCCGGCAAAGGAAGTTTGGCTGCCGTCGGGAAACATGGCTATTGGCAAGGAAGAAGAAGACCGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

15.14

Weight (kDa)

7.93

Isoelectric Point (pI)

62.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16510 AT4G16510
fragaria_vesca	FvH4_2g25460 FvH4_3g26313 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g26851 FvH4_5g38900 FvH4_6g19840 FvH4_6g26281 FvH4_7g10800
malus_domestica	MD00G1115100.v1.1 MD06G1061300.v1.1
prunus_persica	Prupe.5G072600_v2.0.a1
pyrus_communis	pycom06g05140
rosa_chinensis	RchiOBHm_Chr1g0333271 RchiOBHm_Chr2g0095921 RchiOBHm_Chr2g0099411 RchiOBHm_Chr7g0202881 RchiOBHm_Chr7g0233531
rosa_laevigata	RLG00000003567 RLG00000033632
rosa_multiflora	Rmu_sc0003729.1_g000007 Rmu_sc0033032.1_g000002
rosa_roxburghii	Rroxscaffold_1G00038270 Rroxscaffold_2G00110700 Rroxscaffold_3G00254210
rosa_rugosa	Rorug07G0073500
rosa_samantha	Rh2DG104700 Rh2DG133400 Rh7AG201300 Rh7BG201700 Rh7CG212800 Rh7DG208300
rosa_wichuraiana	Rw7G017610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	68
AclWI	GGATC	1 cut(s)	60
AfiI	CCNNNNNNNGG	1 cut(s)	108
AflIII	ACRYGT	1 cut(s)	66
AgsI	TTSAA	2 cut(s)	170, 226
AloI	GAACNNNNNNTCC	2 cut(s)	296, 328
AluBI	AGCT	1 cut(s)	293
AluI	AGCT	1 cut(s)	293
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	1 cut(s)	196
AlwI	GGATC	1 cut(s)	60
AoxI	GGCC	1 cut(s)	231
ApeKI	GCWGC	1 cut(s)	361
Asp700I	GAANNNNTTC	2 cut(s)	138, 311
BbsI	GAAGAC	1 cut(s)	405
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	1 cut(s)	348
BccI	CCATC	3 cut(s)	48, 242, 269
BceAI	ACGGC	2 cut(s)	61, 349
BcoDI	GTCTC	1 cut(s)	196
BfaI	CTAG	1 cut(s)	216
BisI	GCNGC	1 cut(s)	362
BlsI	GCNGC	1 cut(s)	363
BoxI	GACNNNNGTC	1 cut(s)	67
BpiI	GAAGAC	1 cut(s)	405
BsaJI	CCNNGG	2 cut(s)	58, 143
BsaXI	ACNNNNNCTCC	4 cut(s)	195, 225, 296, 326
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse118I	RCCGGY	1 cut(s)	343
BseDI	CCNNGG	2 cut(s)	58, 143
BseGI	GGATG	1 cut(s)	136
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMII	CTCAG	1 cut(s)	285
BseRI	GAGGAG	1 cut(s)	216
BseXI	GCAGC	1 cut(s)	348
Bsh1236I	CGCG	1 cut(s)	68
BshFI	GGCC	1 cut(s)	233
BsiHKAI	GWGCWC	1 cut(s)	273
BsiSI	CCGG	2 cut(s)	329, 344
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	1 cut(s)	196
BsnI	GGCC	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	1 cut(s)	52
BspANI	GGCC	1 cut(s)	233
BspCNI	CTCAG	1 cut(s)	286
BspFNI	CGCG	1 cut(s)	68
BspPI	GGATC	1 cut(s)	60
BsrFI	RCCGGY	1 cut(s)	343
BssAI	RCCGGY	1 cut(s)	343
BssECI	CCNNGG	2 cut(s)	58, 143
BssMI	GATC	1 cut(s)	52
BssT1I	CCWWGG	1 cut(s)	58
Bst4CI	ACNGT	1 cut(s)	404
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	3 cut(s)	80, 174, 294
BstDSI	CCRYGG	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	136
BstFNI	CGCG	1 cut(s)	68
BstKTI	GATC	1 cut(s)	55
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	1 cut(s)	52
BstPAI	GACNNNNGTC	1 cut(s)	67
BstUI	CGCG	1 cut(s)	68
BstV1I	GCAGC	1 cut(s)	348
BstV2I	GAAGAC	1 cut(s)	405
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	233
BtgI	CCRYGG	1 cut(s)	143
BtsCI	GGATG	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	345
Cfr10I	RCCGGY	1 cut(s)	343
CseI	GACGC	1 cut(s)	57
CspCI	CAANNNNNGTGG	2 cut(s)	226, 261
CviAII	CATG	2 cut(s)	300, 376
CviJI	RGCY	6 cut(s)	48, 90, 233, 293, 361, 380
CviKI_1	RGCY	6 cut(s)	48, 90, 233, 293, 361, 380
DdeI	CTNAG	3 cut(s)	80, 174, 294
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	58
EcoT14I	CCWWGG	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	58
FaeI	CATG	2 cut(s)	303, 379
FaiI	YATR	5 cut(s)	29, 31, 260, 301, 377
FatI	CATG	2 cut(s)	299, 375
Fnu4HI	GCNGC	1 cut(s)	362
FokI	GGATG	1 cut(s)	143
Fsp4HI	GCNGC	1 cut(s)	362
FspBI	CTAG	1 cut(s)	216
GluI	GCNGC	1 cut(s)	362
HaeIII	GGCC	1 cut(s)	233
HapII	CCGG	2 cut(s)	329, 344
HgaI	GACGC	1 cut(s)	57
Hin1II	CATG	2 cut(s)	303, 379
HinfI	GANTC	3 cut(s)	116, 206, 296
HpaII	CCGG	2 cut(s)	329, 344
Hpy188III	TCNNGA	2 cut(s)	193, 369
Hpy99I	CGWCG	1 cut(s)	370
HpyAV	CCTTC	3 cut(s)	46, 176, 223
HpyCH4III	ACNGT	1 cut(s)	404
HpyF3I	CTNAG	3 cut(s)	80, 174, 294
Hsp92II	CATG	2 cut(s)	303, 379
KroI	GCCGGC	1 cut(s)	343
KroNI	GCCGGC	1 cut(s)	345
Kzo9I	GATC	1 cut(s)	52
LpnPI	CCDG	3 cut(s)	94, 342, 357
Lsp1109I	GCAGC	1 cut(s)	348
MaeI	CTAG	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MboII	GAAGA	5 cut(s)	238, 319, 404, 407, 410
MflI	RGATCY	1 cut(s)	52
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	1 cut(s)	150
MluI	ACGCGT	1 cut(s)	66
MlyI	GAGTC	1 cut(s)	305
MnlI	CCTC	4 cut(s)	106, 112, 194, 275
MroNI	GCCGGC	1 cut(s)	343
MroXI	GAANNNNTTC	2 cut(s)	138, 311
MspI	CCGG	2 cut(s)	329, 344
MvnI	CGCG	1 cut(s)	68
NaeI	GCCGGC	1 cut(s)	345
NdeII	GATC	1 cut(s)	52
NgoMIV	GCCGGC	1 cut(s)	343
NlaIII	CATG	2 cut(s)	303, 379
NmuCI	GTSAC	1 cut(s)	23
PdiI	GCCGGC	1 cut(s)	345
PdmI	GAANNNNTTC	2 cut(s)	138, 311
PfeI	GAWTC	2 cut(s)	116, 206
PflFI	GACNNNGTC	1 cut(s)	188
PkrI	GCNGC	1 cut(s)	363
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
PshAI	GACNNNNGTC	1 cut(s)	67
PsuI	RGATCY	1 cut(s)	52
PsyI	GACNNNGTC	1 cut(s)	188
SatI	GCNGC	1 cut(s)	362
Sau3AI	GATC	1 cut(s)	52
SchI	GAGTC	1 cut(s)	305
SduI	GDGCHC	1 cut(s)	273
SetI	ASST	1 cut(s)	295
Sse9I	AATT	1 cut(s)	150
SspI	AATATT	1 cut(s)	139
SspMI	CTAG	1 cut(s)	216
StyI	CCWWGG	1 cut(s)	58
TaaI	ACNGT	1 cut(s)	404
TaqI	TCGA	2 cut(s)	194, 273
TasI	AATT	1 cut(s)	150
TfiI	GAWTC	2 cut(s)	116, 206
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	1 cut(s)	361
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	2 cut(s)	143, 147
TspGWI	ACGGA	1 cut(s)	160
Tth111I	GACNNNGTC	1 cut(s)	188
XmnI	GAANNNNTTC	2 cut(s)	138, 311
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.