Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002840

Physical Location & Seq

Genomic Coordinates Forward (+)

5646146 .. 5648607

Gene Structure 2462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0073500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGAAGACGGCAACCCCAACCCCAATAACGCCATAATCTCCCGGGAGACGATTGACTCGGTCGCCGGCTGGGTCAGCGCCACCGTCTCCTCCGCCTTCTTCTCCTCCCTCGAGCGCTTCTCCTGCGTCAACGTCGCCACCACGGAGGACGACGATGACGACGACGAGGCCGCCCACCGCCCCCTCGCTCTCACCGATCTCACCCACCCCGATCAACAGCACCACCACGCAAACGACGTCGCTCAGCTCCCCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_edit

Protein Analysis

85

Amino Acids

9.23

Weight (kDa)

4.18

Isoelectric Point (pI)

34.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16510 AT4G16510
fragaria_vesca	FvH4_2g25460 FvH4_3g26313 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g00080 FvH4_5g26851 FvH4_5g38900 FvH4_6g19840 FvH4_6g26281 FvH4_7g10800
malus_domestica	MD00G1115100.v1.1 MD06G1061300.v1.1
prunus_persica	Prupe.5G072600_v2.0.a1
pyrus_communis	pycom06g05140
rosa_chinensis	RchiOBHm_Chr1g0333271 RchiOBHm_Chr2g0095921 RchiOBHm_Chr2g0099411 RchiOBHm_Chr7g0202881 RchiOBHm_Chr7g0233531
rosa_laevigata	RLG00000003567 RLG00000033632
rosa_multiflora	Rmu_sc0003729.1_g000007 Rmu_sc0033032.1_g000002
rosa_roxburghii	Rroxscaffold_1G00038270 Rroxscaffold_2G00110700 Rroxscaffold_3G00254210
rosa_rugosa	Rorug07G0073500
rosa_samantha	Rh2DG104700 Rh2DG133400 Rh7AG201300 Rh7BG201700 Rh7CG212800 Rh7DG208300
rosa_wichuraiana	Rw7G017610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	240
AciI	CCGC	3 cut(s)	93, 171, 178
AcyI	GRCGYC	1 cut(s)	237
AfeI	AGCGCT	1 cut(s)	116
AluBI	AGCT	1 cut(s)	247
AluI	AGCT	1 cut(s)	247
Alw26I	GTCTC	2 cut(s)	41, 91
Ama87I	CYCGRG	2 cut(s)	42, 110
Aor51HI	AGCGCT	1 cut(s)	116
AoxI	GGCC	1 cut(s)	168
AspLEI	GCGC	2 cut(s)	80, 117
AsuC2I	CCSGG	2 cut(s)	43, 44
AsuHPI	GGTGA	2 cut(s)	184, 193
AvaI	CYCGRG	2 cut(s)	42, 110
BbsI	GAAGAC	1 cut(s)	12
BceAI	ACGGC	1 cut(s)	25
BcnI	CCSGG	2 cut(s)	43, 44
BcoDI	GTCTC	2 cut(s)	41, 91
BfoI	RGCGCY	2 cut(s)	81, 118
BisI	GCNGC	1 cut(s)	171
BlpI	GCTNAGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	172
Bme1390I	CCNGG	2 cut(s)	43, 44
BmeT110I	CYCGRG	2 cut(s)	42, 110
BmrFI	CCNGG	2 cut(s)	43, 44
BpiI	GAAGAC	1 cut(s)	12
BplI	GAGNNNNNCTC	2 cut(s)	104, 136
Bpu1102I	GCTNAGC	1 cut(s)	243
BpuMI	CCSGG	2 cut(s)	43, 44
BsaHI	GRCGYC	1 cut(s)	237
BsaJI	CCNNGG	2 cut(s)	42, 141
Bse118I	RCCGGY	1 cut(s)	65
BseDI	CCNNGG	2 cut(s)	42, 141
BseMII	CTCAG	1 cut(s)	257
BseRI	GAGGAG	2 cut(s)	79, 94
BseYI	CCCAGC	1 cut(s)	69
Bsh1285I	CGRYCG	1 cut(s)	63
BshFI	GGCC	1 cut(s)	170
BsiEI	CGRYCG	1 cut(s)	63
BsiHKCI	CYCGRG	2 cut(s)	42, 110
BsiSI	CCGG	2 cut(s)	43, 66
BsmAI	GTCTC	2 cut(s)	41, 91
BsmBI	CGTCTC	2 cut(s)	41, 91
BsnI	GGCC	1 cut(s)	170
BsoBI	CYCGRG	2 cut(s)	42, 110
Bsp143I	GATC	2 cut(s)	196, 211
Bsp1720I	GCTNAGC	1 cut(s)	243
BspACI	CCGC	3 cut(s)	93, 171, 178
BspANI	GGCC	1 cut(s)	170
BspCNI	CTCAG	1 cut(s)	256
BsrFI	RCCGGY	1 cut(s)	65
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	2 cut(s)	42, 141
BssMI	GATC	2 cut(s)	196, 211
BssNI	GRCGYC	1 cut(s)	237
Bst4CI	ACNGT	1 cut(s)	85
BstACI	GRCGYC	1 cut(s)	237
BstC8I	GCNNGC	1 cut(s)	67
BstDEI	CTNAG	1 cut(s)	243
BstDSI	CCRYGG	1 cut(s)	141
BstH2I	RGCGCY	2 cut(s)	81, 118
BstHHI	GCGC	2 cut(s)	80, 117
BstKTI	GATC	2 cut(s)	199, 214
BstMAI	GTCTC	2 cut(s)	41, 91
BstMBI	GATC	2 cut(s)	196, 211
BstMCI	CGRYCG	1 cut(s)	63
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 123
BstSCI	CCNGG	2 cut(s)	41, 42
BstV2I	GAAGAC	1 cut(s)	12
BsuRI	GGCC	1 cut(s)	170
BtgI	CCRYGG	1 cut(s)	141
Cac8I	GCNNGC	1 cut(s)	67
CfoI	GCGC	2 cut(s)	80, 117
Cfr10I	RCCGGY	1 cut(s)	65
Cfr9I	CCCGGG	1 cut(s)	42
CseI	GACGC	1 cut(s)	115
CviJI	RGCY	3 cut(s)	69, 170, 247
CviKI_1	RGCY	3 cut(s)	69, 170, 247
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	2 cut(s)	198, 213
DpnII	GATC	2 cut(s)	196, 211
EciI	GGCGGA	1 cut(s)	82
Eco47III	AGCGCT	1 cut(s)	116
Eco88I	CYCGRG	2 cut(s)	42, 110
Esp3I	CGTCTC	2 cut(s)	41, 91
FaiI	YATR	1 cut(s)	35
Fnu4HI	GCNGC	1 cut(s)	171
Fsp4HI	GCNGC	1 cut(s)	171
GlaI	GCGC	2 cut(s)	79, 116
GluI	GCNGC	1 cut(s)	171
GsaI	CCCAGC	1 cut(s)	73
HaeII	RGCGCY	2 cut(s)	81, 118
HaeIII	GGCC	1 cut(s)	170
HapII	CCGG	2 cut(s)	43, 66
HgaI	GACGC	1 cut(s)	115
HhaI	GCGC	2 cut(s)	80, 117
Hin1I	GRCGYC	1 cut(s)	237
Hin6I	GCGC	2 cut(s)	78, 115
HinP1I	GCGC	2 cut(s)	78, 115
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	2 cut(s)	43, 66
HphI	GGTGA	2 cut(s)	184, 193
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	1 cut(s)	257
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	6 cut(s)	137, 155, 164, 167, 239, 242
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4IV	ACGT	2 cut(s)	132, 237
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 123
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	2 cut(s)	132, 237
Hsp92I	GRCGYC	1 cut(s)	237
HspAI	GCGC	2 cut(s)	78, 115
KroI	GCCGGC	1 cut(s)	65
KroNI	GCCGGC	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	196, 211
LmnI	GCTCC	1 cut(s)	252
LpnPI	CCDG	4 cut(s)	55, 56, 79, 136
MaeII	ACGT	2 cut(s)	132, 237
MalI	GATC	2 cut(s)	198, 213
MboI	GATC	2 cut(s)	196, 211
MboII	GAAGA	2 cut(s)	17, 91
MlyI	GAGTC	1 cut(s)	50
MnlI	CCTC	6 cut(s)	100, 115, 119, 139, 160, 194
MroNI	GCCGGC	1 cut(s)	65
MspI	CCGG	2 cut(s)	43, 66
MspR9I	CCNGG	2 cut(s)	43, 44
MwoI	GCNNNNNNNGC	2 cut(s)	75, 123
NaeI	GCCGGC	1 cut(s)	67
NciI	CCSGG	2 cut(s)	43, 44
NdeII	GATC	2 cut(s)	196, 211
NgoMIV	GCCGGC	1 cut(s)	65
PaeR7I	CTCGAG	1 cut(s)	110
PcsI	WCGNNNNNNNCGW	4 cut(s)	156, 159, 192, 234
PdiI	GCCGGC	1 cut(s)	67
PflFI	GACNNNGTC	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	172
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
PspFI	CCCAGC	1 cut(s)	69
PspXI	VCTCGAGB	1 cut(s)	110
PsyI	GACNNNGTC	1 cut(s)	59
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	2 cut(s)	196, 211
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	2 cut(s)	43, 44
SetI	ASST	3 cut(s)	135, 240, 249
Sfr274I	CTCGAG	1 cut(s)	110
SlaI	CTCGAG	1 cut(s)	110
SmaI	CCCGGG	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
SsiI	CCGC	3 cut(s)	93, 171, 178
StyD4I	CCNGG	2 cut(s)	41, 42
TaaI	ACNGT	1 cut(s)	85
TaiI	ACGT	2 cut(s)	135, 240
TaqI	TCGA	1 cut(s)	111
TaqII	GACCGA	1 cut(s)	49
TauI	GCSGC	1 cut(s)	173
TspGWI	ACGGA	1 cut(s)	158
TspMI	CCCGGG	1 cut(s)	42
Tth111I	GACNNNGTC	1 cut(s)	59
XhoI	CTCGAG	1 cut(s)	110
XmaI	CCCGGG	1 cut(s)	42
ZraI	GACGTC	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.