FvH4_7g10800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002840
Physical Location & Seq
Forward (+)
10135555 .. 10136522
968 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g10800.t1

Sequence Viewer

Length: 561 bp
ATGGCTGCCAAAGTCCCCATTTCAGGCCTCCTCCCATCTCTTCTCTTCAACCCATCTCATCTCAATCTCCAAAACCTTCCTCTCTCCTCTGCTAATTGTAGTAAGCTCCACCCCTCCGTTGCCGCTAGGAAAATGTCCTCGGAACCGGCTCTAAACGGTGTTTTGGACGCTAGAACGACCCTGTCTTTTTCAAAGACAAATGAGTGGGGAGATCCCTCGAGATTCCACCATGGGTGCCGGTGCGAAGGTCTGCAACTTCATGGCAACGAGCAAAGGAAAAAGGACGGCGATGGATCCACTGCAAATCCCCCCAACGGCGGCGGCTGCTTTTCCAACAGTGCACCACCATCATCGGCGTCACCTACCTACGACTGCGGTGTAGTGCTCGGCGCCGACTCTCGAACCACATGTGTCTATGTTGCGAATCGTGCTCAGCAGTCATTGAGGCCCCTTTTGGGATTGGAGGGTCTCCAGTTTATGGATTCTTGGCCAAGCATGAAGAGAAGGAATGAGCTAACAGCAAGCAGAGGCGTTGGTTGTGAAAAGAAATTTCTACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

19.88

Weight (kDa)

9.08

Isoelectric Point (pI)

51.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 234, 389
AccB7I CCANNNNNTGG 1 cut(s) 478
AciI CCGC 4 cut(s) 123, 318, 321, 375
AclWI GGATC 3 cut(s) 206, 288, 301
AcoI YGGCCR 1 cut(s) 488
AcsI RAATTY 1 cut(s) 548
AcyI GRCGYC 2 cut(s) 356, 390
AfiI CCNNNNNNNGG 5 cut(s) 23, 314, 317, 455, 478
AflIII ACRYGT 1 cut(s) 407
AgsI TTSAA 2 cut(s) 49, 192
AluBI AGCT 2 cut(s) 106, 514
AluI AGCT 2 cut(s) 106, 514
Alw21I GWGCWC 3 cut(s) 343, 387, 433
Alw26I GTCTC 1 cut(s) 473
Alw44I GTGCAC 1 cut(s) 339
AlwI GGATC 3 cut(s) 206, 288, 301
Ama87I CYCGRG 1 cut(s) 217
AoxI GGCC 3 cut(s) 25, 446, 488
ApaLI GTGCAC 1 cut(s) 339
ApeKI GCWGC 2 cut(s) 5, 324
ApoI RAATTY 1 cut(s) 548
AspLEI GCGC 1 cut(s) 392
AspS9I GGNCC 1 cut(s) 447
AsuHPI GGTGA 1 cut(s) 351
AvaI CYCGRG 1 cut(s) 217
BaeGI GKGCMC 1 cut(s) 343
BalI TGGCCA 1 cut(s) 490
BamHI GGATCC 1 cut(s) 293
BanI GGYRCC 2 cut(s) 234, 389
Bbv12I GWGCWC 3 cut(s) 343, 387, 433
BbvI GCAGC 1 cut(s) 311
BccI CCATC 4 cut(s) 43, 61, 284, 355
BceAI ACGGC 2 cut(s) 301, 331
BcoDI GTCTC 1 cut(s) 473
BfaI CTAG 2 cut(s) 126, 171
BfoI RGCGCY 1 cut(s) 393
BisI GCNGC 5 cut(s) 6, 123, 319, 322, 325
BlpI GCTNAGC 1 cut(s) 432
BlsI GCNGC 5 cut(s) 7, 124, 320, 323, 326
BmeT110I CYCGRG 1 cut(s) 217
BmgT120I GGNCC 1 cut(s) 447
BmiI GGNNCC 5 cut(s) 144, 236, 295, 391, 449
BpmI CTGGAG 1 cut(s) 455
Bpu1102I GCTNAGC 1 cut(s) 432
BsaHI GRCGYC 2 cut(s) 356, 390
BsaI GGTCTC 1 cut(s) 473
BsaJI CCNNGG 2 cut(s) 138, 229
Bsc4I CCNNNNNNNGG 5 cut(s) 23, 314, 317, 455, 478
Bse118I RCCGGY 2 cut(s) 145, 237
Bse1I ACTGG 1 cut(s) 472
BseDI CCNNGG 2 cut(s) 138, 229
BseLI CCNNNNNNNGG 5 cut(s) 23, 314, 317, 455, 478
BseMII CTCAG 1 cut(s) 446
BseNI ACTGG 1 cut(s) 472
BseRI GAGGAG 2 cut(s) 20, 76
BseSI GKGCMC 1 cut(s) 343
BseXI GCAGC 1 cut(s) 311
BshFI GGCC 3 cut(s) 27, 448, 490
BshNI GGYRCC 2 cut(s) 234, 389
BsiHKAI GWGCWC 3 cut(s) 343, 387, 433
BsiHKCI CYCGRG 1 cut(s) 217
BsiSI CCGG 2 cut(s) 146, 238
BslI CCNNNNNNNGG 5 cut(s) 23, 314, 317, 455, 478
BsmAI GTCTC 1 cut(s) 473
BsnI GGCC 3 cut(s) 27, 448, 490
Bso31I GGTCTC 1 cut(s) 473
BsoBI CYCGRG 1 cut(s) 217
Bsp1286I GDGCHC 3 cut(s) 343, 387, 433
Bsp143I GATC 2 cut(s) 211, 293
Bsp1720I GCTNAGC 1 cut(s) 432
Bsp19I CCATGG 1 cut(s) 229
BspACI CCGC 4 cut(s) 123, 318, 321, 375
BspANI GGCC 3 cut(s) 27, 448, 490
BspCNI CTCAG 1 cut(s) 445
BspLI GGNNCC 5 cut(s) 144, 236, 295, 391, 449
BspPI GGATC 3 cut(s) 206, 288, 301
BspT107I GGYRCC 2 cut(s) 234, 389
BspTNI GGTCTC 1 cut(s) 473
BsrFI RCCGGY 2 cut(s) 145, 237
BsrI ACTGG 1 cut(s) 472
BssAI RCCGGY 2 cut(s) 145, 237
BssECI CCNNGG 2 cut(s) 138, 229
BssMI GATC 2 cut(s) 211, 293
BssNI GRCGYC 2 cut(s) 356, 390
BssT1I CCWWGG 1 cut(s) 229
Bst4CI ACNGT 2 cut(s) 158, 338
Bst6I CTCTTC 3 cut(s) 45, 50, 494
BstACI GRCGYC 2 cut(s) 356, 390
BstC8I GCNNGC 1 cut(s) 523
BstDEI CTNAG 1 cut(s) 432
BstDSI CCRYGG 1 cut(s) 229
BstH2I RGCGCY 1 cut(s) 393
BstHHI GCGC 1 cut(s) 392
BstKTI GATC 2 cut(s) 214, 296
BstMAI GTCTC 1 cut(s) 473
BstMBI GATC 2 cut(s) 211, 293
BstMWI GCNNNNNNNGC 2 cut(s) 324, 428
BstNSI RCATGY 1 cut(s) 411
BstSLI GKGCMC 1 cut(s) 343
BstV1I GCAGC 1 cut(s) 311
BstX2I RGATCY 2 cut(s) 211, 293
BstYI RGATCY 2 cut(s) 211, 293
BsuRI GGCC 3 cut(s) 27, 448, 490
BtgI CCRYGG 1 cut(s) 229
BtgZI GCGATG 1 cut(s) 303
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 2 cut(s) 297, 343
Cac8I GCNNGC 1 cut(s) 523
CfoI GCGC 1 cut(s) 392
Cfr10I RCCGGY 2 cut(s) 145, 237
Cfr13I GGNCC 1 cut(s) 447
CseI GACGC 2 cut(s) 176, 345
CviAII CATG 4 cut(s) 230, 260, 408, 496
CviJI RGCY 8 cut(s) 5, 27, 106, 149, 324, 448, 490, 514
CviKI_1 RGCY 8 cut(s) 5, 27, 106, 149, 324, 448, 490, 514
DdeI CTNAG 1 cut(s) 432
DinI GGCGCC 1 cut(s) 391
DpnI GATC 2 cut(s) 213, 295
DpnII GATC 2 cut(s) 211, 293
EaeI YGGCCR 1 cut(s) 488
Eam1104I CTCTTC 3 cut(s) 45, 50, 494
EarI CTCTTC 3 cut(s) 45, 50, 494
Eco130I CCWWGG 1 cut(s) 229
Eco147I AGGCCT 1 cut(s) 27
Eco31I GGTCTC 1 cut(s) 473
Eco88I CYCGRG 1 cut(s) 217
EcoO109I RGGNCCY 1 cut(s) 447
EcoT14I CCWWGG 1 cut(s) 229
EgeI GGCGCC 1 cut(s) 391
EheI GGCGCC 1 cut(s) 391
ErhI CCWWGG 1 cut(s) 229
FaeI CATG 4 cut(s) 233, 263, 411, 499
FaiI YATR 7 cut(s) 231, 261, 409, 417, 479, 497, 559
FatI CATG 4 cut(s) 229, 259, 407, 495
Fnu4HI GCNGC 5 cut(s) 6, 123, 319, 322, 325
Fsp4HI GCNGC 5 cut(s) 6, 123, 319, 322, 325
FspBI CTAG 2 cut(s) 126, 171
GlaI GCGC 1 cut(s) 391
GluI GCNGC 5 cut(s) 6, 123, 319, 322, 325
GsuI CTGGAG 1 cut(s) 455
HaeII RGCGCY 1 cut(s) 393
HaeIII GGCC 3 cut(s) 27, 448, 490
HapII CCGG 2 cut(s) 146, 238
HgaI GACGC 2 cut(s) 176, 345
HhaI GCGC 1 cut(s) 392
Hin1I GRCGYC 2 cut(s) 356, 390
Hin1II CATG 4 cut(s) 233, 263, 411, 499
Hin6I GCGC 1 cut(s) 390
HinP1I GCGC 1 cut(s) 390
HinfI GANTC 4 cut(s) 222, 395, 424, 482
HpaII CCGG 2 cut(s) 146, 238
HphI GGTGA 1 cut(s) 351
Hpy166II GTNNAC 1 cut(s) 341
Hpy188I TCNGA 1 cut(s) 142
Hpy188III TCNNGA 2 cut(s) 219, 399
Hpy8I GTNNAC 1 cut(s) 341
HpyAV CCTTC 3 cut(s) 86, 239, 498
HpyCH4III ACNGT 2 cut(s) 158, 338
HpyCH4V TGCA 3 cut(s) 253, 302, 341
HpyF10VI GCNNNNNNNGC 2 cut(s) 324, 428
HpyF3I CTNAG 1 cut(s) 432
Hsp92I GRCGYC 2 cut(s) 356, 390
Hsp92II CATG 4 cut(s) 233, 263, 411, 499
HspAI GCGC 1 cut(s) 390
KasI GGCGCC 1 cut(s) 389
Kzo9I GATC 2 cut(s) 211, 293
LmnI GCTCC 1 cut(s) 111
LpnPI CCDG 5 cut(s) 9, 159, 194, 251, 485
Lsp1109I GCAGC 1 cut(s) 311
MaeI CTAG 2 cut(s) 126, 171
MaeIII GTNAC 1 cut(s) 357
MalI GATC 2 cut(s) 213, 295
MboI GATC 2 cut(s) 211, 293
MboII GAAGA 3 cut(s) 32, 37, 511
MflI RGATCY 2 cut(s) 211, 293
MhlI GDGCHC 3 cut(s) 343, 387, 433
MlsI TGGCCA 1 cut(s) 490
MluCI AATT 2 cut(s) 94, 548
MluNI TGGCCA 1 cut(s) 490
Mly113I GGCGCC 1 cut(s) 390
MlyI GAGTC 1 cut(s) 389
MmeI TCCRAC 1 cut(s) 357
Mox20I TGGCCA 1 cut(s) 490
MscI TGGCCA 1 cut(s) 490
Msp20I TGGCCA 1 cut(s) 490
MspI CCGG 2 cut(s) 146, 238
MwoI GCNNNNNNNGC 2 cut(s) 324, 428
NarI GGCGCC 1 cut(s) 390
NcoI CCATGG 1 cut(s) 229
NdeII GATC 2 cut(s) 211, 293
NlaIII CATG 4 cut(s) 233, 263, 411, 499
NlaIV GGNNCC 5 cut(s) 144, 236, 295, 391, 449
NmeAIII GCCGAG 1 cut(s) 366
NmuCI GTSAC 1 cut(s) 357
NspI RCATGY 1 cut(s) 411
PaeR7I CTCGAG 1 cut(s) 217
PceI AGGCCT 1 cut(s) 27
PciI ACATGT 1 cut(s) 407
PfeI GAWTC 3 cut(s) 222, 424, 482
PflFI GACNNNGTC 1 cut(s) 181
PflMI CCANNNNNTGG 1 cut(s) 478
PkrI GCNGC 5 cut(s) 7, 124, 320, 323, 326
PleI GAGTC 1 cut(s) 389
PluTI GGCGCC 1 cut(s) 393
PpsI GAGTC 1 cut(s) 389
PscI ACATGT 1 cut(s) 407
PspN4I GGNNCC 5 cut(s) 144, 236, 295, 391, 449
PspPI GGNCC 1 cut(s) 447
PsuI RGATCY 2 cut(s) 211, 293
PsyI GACNNNGTC 1 cut(s) 181
SatI GCNGC 5 cut(s) 6, 123, 319, 322, 325
Sau3AI GATC 2 cut(s) 211, 293
Sau96I GGNCC 1 cut(s) 447
SchI GAGTC 1 cut(s) 389
SduI GDGCHC 3 cut(s) 343, 387, 433
SetI ASST 6 cut(s) 78, 108, 250, 364, 368, 516
SfoI GGCGCC 1 cut(s) 391
Sfr274I CTCGAG 1 cut(s) 217
SlaI CTCGAG 1 cut(s) 217
SmlI CTYRAG 1 cut(s) 217
SmoI CTYRAG 1 cut(s) 217
Sse9I AATT 2 cut(s) 94, 548
SseBI AGGCCT 1 cut(s) 27
SsiI CCGC 4 cut(s) 123, 318, 321, 375
SspDI GGCGCC 1 cut(s) 389
SspMI CTAG 2 cut(s) 126, 171
StuI AGGCCT 1 cut(s) 27
StyI CCWWGG 1 cut(s) 229
TaaI ACNGT 2 cut(s) 158, 338
TaqI TCGA 2 cut(s) 218, 400
TasI AATT 2 cut(s) 94, 548
TauI GCSGC 3 cut(s) 125, 321, 324
TfiI GAWTC 3 cut(s) 222, 424, 482
TscAI CASTG 2 cut(s) 304, 343
TseFI GTSAC 1 cut(s) 357
TseI GCWGC 2 cut(s) 5, 324
Tsp45I GTSAC 1 cut(s) 357
TspDTI ATGAA 2 cut(s) 248, 512
TspGWI ACGGA 1 cut(s) 106
TspRI CASTG 2 cut(s) 304, 343
Tth111I GACNNNGTC 1 cut(s) 181
Van91I CCANNNNNTGG 1 cut(s) 478
VneI GTGCAC 1 cut(s) 339
XapI RAATTY 1 cut(s) 548
XceI RCATGY 1 cut(s) 411
XhoI CTCGAG 1 cut(s) 217
XspI CTAG 2 cut(s) 126, 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.