RchiOBHm_Chr1g0333271

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
25274670 .. 25276645
1976 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56208

Sequence Viewer

Length: 186 bp
ATGTCATCTGCAGCCGAAGTTATCAGCCCTATCCTCCTTCCATCTCTTCTCTTCTATTTTTTCCTCAACCCACCTCATCTCAATCCACAAACCCCTCTCTCCTTTGCTAATTGTAGTAAGCTCCACCCCTTTGATGCCACTAGAGTAACGTCCCCGAGACCAGATCCATCCCCTGGACATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

61

Amino Acids

6.69

Weight (kDa)

6.22

Isoelectric Point (pI)

67.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 173
AclWI GGATC 1 cut(s) 158
AfiI CCNNNNNNNGG 1 cut(s) 173
AjnI CCWGG 1 cut(s) 172
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
Alw26I GTCTC 1 cut(s) 151
AlwI GGATC 1 cut(s) 158
Ama87I CYCGRG 1 cut(s) 154
ApeKI GCWGC 1 cut(s) 11
AvaI CYCGRG 1 cut(s) 154
BbvI GCAGC 1 cut(s) 23
BccI CCATC 2 cut(s) 49, 175
BciT130I CCWGG 1 cut(s) 174
BcoDI GTCTC 1 cut(s) 151
BfaI CTAG 1 cut(s) 141
BfmI CTRYAG 1 cut(s) 9
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
Bme1390I CCNGG 1 cut(s) 174
BmeT110I CYCGRG 1 cut(s) 154
BmrFI CCNGG 1 cut(s) 174
BmsI GCATC 1 cut(s) 124
BsaI GGTCTC 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 172
Bsc4I CCNNNNNNNGG 1 cut(s) 173
BseBI CCWGG 1 cut(s) 174
BseDI CCNNGG 1 cut(s) 172
BseGI GGATG 1 cut(s) 167
BseLI CCNNNNNNNGG 1 cut(s) 173
BseXI GCAGC 1 cut(s) 23
BsiHKCI CYCGRG 1 cut(s) 154
BslFI GGGAC 1 cut(s) 136
BslI CCNNNNNNNGG 1 cut(s) 173
BsmAI GTCTC 1 cut(s) 151
BsmFI GGGAC 1 cut(s) 136
Bso31I GGTCTC 1 cut(s) 151
BsoBI CYCGRG 1 cut(s) 154
Bsp143I GATC 1 cut(s) 163
BspMAI CTGCAG 1 cut(s) 13
BspPI GGATC 1 cut(s) 158
BspTNI GGTCTC 1 cut(s) 151
BssECI CCNNGG 1 cut(s) 172
BssMI GATC 1 cut(s) 163
Bst2UI CCWGG 1 cut(s) 174
Bst6I CTCTTC 2 cut(s) 51, 56
BstF5I GGATG 1 cut(s) 167
BstKTI GATC 1 cut(s) 166
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 1 cut(s) 163
BstNI CCWGG 1 cut(s) 174
BstSCI CCNGG 1 cut(s) 172
BstSFI CTRYAG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 23
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
BtsCI GGATG 1 cut(s) 167
CviAII CATG 1 cut(s) 179
CviJI RGCY 3 cut(s) 14, 27, 121
CviKI_1 RGCY 3 cut(s) 14, 27, 121
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
Eam1104I CTCTTC 2 cut(s) 51, 56
EarI CTCTTC 2 cut(s) 51, 56
Eco31I GGTCTC 1 cut(s) 151
Eco88I CYCGRG 1 cut(s) 154
EcoRII CCWGG 1 cut(s) 172
FaeI CATG 1 cut(s) 182
FaiI YATR 1 cut(s) 180
FaqI GGGAC 1 cut(s) 136
FatI CATG 1 cut(s) 178
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 1 cut(s) 154
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 1 cut(s) 141
GluI GCNGC 1 cut(s) 12
Hin1II CATG 1 cut(s) 182
HpyAV CCTTC 1 cut(s) 47
HpyCH4IV ACGT 1 cut(s) 149
HpyCH4V TGCA 1 cut(s) 11
HpySE526I ACGT 1 cut(s) 149
Hsp92II CATG 1 cut(s) 182
Kzo9I GATC 1 cut(s) 163
LmnI GCTCC 1 cut(s) 126
LpnPI CCDG 2 cut(s) 159, 174
Lsp1109I GCAGC 1 cut(s) 23
LweI GCATC 1 cut(s) 124
MaeI CTAG 1 cut(s) 141
MaeII ACGT 1 cut(s) 149
MaeIII GTNAC 1 cut(s) 145
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 2 cut(s) 38, 43
MflI RGATCY 1 cut(s) 163
MluCI AATT 1 cut(s) 109
MnlI CCTC 4 cut(s) 44, 74, 84, 105
MseI TTAA 1 cut(s) 184
MspR9I CCNGG 1 cut(s) 174
MvaI CCWGG 1 cut(s) 174
NdeII GATC 1 cut(s) 163
NlaIII CATG 1 cut(s) 182
PflMI CCANNNNNTGG 1 cut(s) 173
PkrI GCNGC 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 172
PstI CTGCAG 1 cut(s) 13
PsuI RGATCY 1 cut(s) 163
SaqAI TTAA 1 cut(s) 184
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 1 cut(s) 163
ScrFI CCNGG 1 cut(s) 174
SetI ASST 3 cut(s) 76, 123, 152
SfaNI GCATC 1 cut(s) 124
SfcI CTRYAG 1 cut(s) 9
SgeI CNNG 4 cut(s) 153, 166, 168, 173
Sse9I AATT 1 cut(s) 109
SspMI CTAG 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 172
TaiI ACGT 1 cut(s) 152
TasI AATT 1 cut(s) 109
Tru1I TTAA 1 cut(s) 184
Tru9I TTAA 1 cut(s) 184
TseI GCWGC 1 cut(s) 11
Van91I CCANNNNNTGG 1 cut(s) 173
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.