AT4G19600

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
10672765 .. 10676929
4165 bp
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UTR
Exon/CDS
Intron
AT4G19600.1

Sequence Viewer

Length: 1626 bp
ATGGCTGGAGTATTAGCTGGGGATTGTTCATTCGGTGAGAGTGGTGTTTCATCTTACTCCAGGAATTCCAATGAAAAGCAGGACGAGGTTGCCCGCTGGTATTTTGGAAGAAAAGAAATTGAAGAAAATTCACCTTCAAGGTTGGATAGTATTGACTTAAAGAAGGAAACATACCTCCGCAAGTCATACTGTACATTTTTGCAGGATTTAGGCATGAGATTAAAAGTTCCTCAGGTTACAATAGCTACCGCAATTATCTTCTGTCATCGATTCTTCATTCGCCAGTCACATGCTAGGAATGACAGAAGGACGATTGCTACAGTCTGCATGTTCCTTGCGGGAAAAGTGGAAGAAACTCCTAGGCCGTTAAAAGATGTTATTGTTGTCTCCTATGAGATAATACACAAGAAGGATCCTACTACTGCACAGAAAATCAAGCAAAAGGAAGTATATGAGCAACAAAAAGAGCTTATACTAAATGGAGAAAAGATTGTACTTTCTACGCTGGGATTTGACTTCAATGTTTATCATCCTTATAAGCCTCTTGTAGAAGCGATAAAGAAATTTAAGGTCGCACAGAATGCTCTGGCCCAAGTTGCATGGAATTTTGTTAACGATGGTCTGCGGACGTCACTCTGCCTGCAATTTAAGCCTCACCACATTGCGGCGGGAGCAATTTTTCTTGCTGCGAAGTTCCTTAAAGTGAAATTACCATCAGATGGAGAGAAGGTCTGGTGGCAAGAATTTGATGTCACACCTCGACAACTAGAGGATGTTAGCAACCAAATGCTTGAGCTCTATGAGCAAAACCGTGTTCCTGCATCTCAAGTAAGCGAAGTCGAAAGTAGTGTAGGTGGAGGATCAGCTCATCATGTTGGGTCTAGGCCATCAGCACGTCTAACTCATGAACATTCAAATTCTGATAATCTCGGGGGCTCGACAAAAGCTACACAAAACCGGAGCAATGATAATGGGAGTGGTGAGGCAGGTAGTGTCATCACCGAGCAGAAGGGGGAAAGAGATACAGAAACGAAAGATAGCATGCATACTGAAAGTCATCCAGCCCATAAGTCTAGATCGGGAGTTGAGGCACCTGGGGAGGATAAAATAGAGAAAGCAGGTGCACATTTTCCAGAAGATGATAAATCTAGAATTGTTGGTACAGCTGATGTCACGGTCAGCCAATCCCCAAAAGACATAAAAATGTTTAGAGATAAGGTGAAGGCCAAACTAGAGGCGAAGAAGGTCCAAGGTGAAAAGACGAGAAAGAAGGATTTGGTGGATGAGGATGATTTGATAGAAAGAGAACTGGAAGACGTGGAATTAGCTGTTGAGGATGACAAAGATATACAAAACAAAAGCTCCATGGGTACAGAACATGGCGAGATTCTTGATGGAAACAACTTGGTGGTCAATACCGAGGAAGGTGAAATGATAGATGATGTTTCTTCAACAATGCCTAGCCGGAAGAGAAAAATGGAAAGTCCTTGTGAAAAACAGTTAGGAGAAGGAAAGAGACGACACGACAACAGTGAGAATGTGGAAGAAGGTCAGAAGACAAACCCAGGAGGAAGTAGTCATAGTTATGGTGACAGAGAGCCAAGAAGACACTCCCAAGAGAGGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

541

Amino Acids

60.71

Weight (kDa)

6.11

Isoelectric Point (pI)

48.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 41 - 173 1.1e-16 Cyclin, N-terminal domain
CycT2-like_C PF21797 177 - 264 4.7e-07 Cyclin-T2-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 537
AarI CACCTGC 1 cut(s) 1109
AatII GACGTC 1 cut(s) 632
Acc36I ACCTGC 2 cut(s) 977, 1109
AccB1I GGYRCC 1 cut(s) 1090
AccB7I CCANNNNNTGG 1 cut(s) 719
AciI CCGC 7 cut(s) 94, 178, 249, 338, 625, 665, 668
AclWI GGATC 3 cut(s) 407, 420, 868
AcsI RAATTY 6 cut(s) 64, 127, 563, 604, 743, 916
AcyI GRCGYC 1 cut(s) 629
AfaI GTAC 4 cut(s) 193, 495, 1162, 1372
AfiI CCNNNNNNNGG 3 cut(s) 664, 719, 1620
AgsI TTSAA 5 cut(s) 122, 138, 520, 915, 1452
AjiI CACGTC 2 cut(s) 896, 1318
AjnI CCWGG 3 cut(s) 59, 1093, 1564
AluBI AGCT 9 cut(s) 17, 245, 469, 796, 866, 947, 1166, 1328, 1362
AluI AGCT 9 cut(s) 17, 245, 469, 796, 866, 947, 1166, 1328, 1362
Alw21I GWGCWC 2 cut(s) 798, 1126
Alw26I GTCTC 2 cut(s) 391, 1510
Alw44I GTGCAC 1 cut(s) 1122
AlwI GGATC 3 cut(s) 407, 420, 868
Ama87I CYCGRG 1 cut(s) 929
AoxI GGCC 4 cut(s) 362, 588, 884, 1224
ApaLI GTGCAC 1 cut(s) 1122
ApeKI GCWGC 1 cut(s) 686
ApoI RAATTY 6 cut(s) 64, 127, 563, 604, 743, 916
AspA2I CCTAGG 1 cut(s) 359
AspS9I GGNCC 2 cut(s) 589, 1246
AsuHPI GGTGA 9 cut(s) 47, 123, 647, 991, 992, 1231, 1265, 1439, 1601
AvaI CYCGRG 1 cut(s) 929
AvaII GGWCC 1 cut(s) 1246
AvrII CCTAGG 1 cut(s) 359
AxyI CCTNAGG 1 cut(s) 231
BaeGI GKGCMC 1 cut(s) 1126
BamHI GGATCC 1 cut(s) 412
BanI GGYRCC 1 cut(s) 1090
BanII GRGCYC 2 cut(s) 798, 938
BarI GAAGNNNNNNTAC 2 cut(s) 155, 187
BbsI GAAGAC 3 cut(s) 1320, 1562, 1612
Bbv12I GWGCWC 2 cut(s) 798, 1126
BbvI GCAGC 1 cut(s) 673
BccI CCATC 5 cut(s) 611, 713, 721, 895, 1388
BceAI ACGGC 1 cut(s) 349
BciT130I CCWGG 3 cut(s) 61, 1095, 1566
BcoDI GTCTC 2 cut(s) 391, 1510
BfaI CTAG 8 cut(s) 294, 360, 767, 882, 1074, 1149, 1232, 1461
BfmI CTRYAG 1 cut(s) 318
BfuAI ACCTGC 2 cut(s) 977, 1109
BisI GCNGC 2 cut(s) 666, 687
BlnI CCTAGG 1 cut(s) 359
BlsI GCNGC 2 cut(s) 667, 688
Bme1390I CCNGG 3 cut(s) 61, 1095, 1566
Bme18I GGWCC 1 cut(s) 1246
BmeT110I CYCGRG 1 cut(s) 929
BmgBI CACGTC 2 cut(s) 896, 1318
BmgT120I GGNCC 2 cut(s) 589, 1246
BmiI GGNNCC 2 cut(s) 414, 1092
BmrFI CCNGG 3 cut(s) 61, 1095, 1566
BmsI GCATC 1 cut(s) 830
BpiI GAAGAC 3 cut(s) 1320, 1562, 1612
BpmI CTGGAG 2 cut(s) 27, 43
BpuEI CTTGAG 2 cut(s) 810, 812
Bsa29I ATCGAT 1 cut(s) 268
BsaHI GRCGYC 1 cut(s) 629
BsaJI CCNNGG 6 cut(s) 359, 1094, 1249, 1365, 1419, 1564
BsaWI WCCGGW 1 cut(s) 957
BsaXI ACNNNNNCTCC 4 cut(s) 714, 744, 1346, 1376
Bsc4I CCNNNNNNNGG 3 cut(s) 664, 719, 1620
Bse1I ACTGG 2 cut(s) 283, 1314
Bse21I CCTNAGG 1 cut(s) 231
Bse3DI GCAATG 2 cut(s) 660, 970
BseBI CCWGG 3 cut(s) 61, 1095, 1566
BseCI ATCGAT 1 cut(s) 268
BseDI CCNNGG 6 cut(s) 359, 1094, 1249, 1365, 1419, 1564
BseGI GGATG 6 cut(s) 529, 778, 1057, 1288, 1294, 1342
BseLI CCNNNNNNNGG 3 cut(s) 664, 719, 1620
BseMI GCAATG 2 cut(s) 660, 970
BseMII CTCAG 1 cut(s) 245
BseNI ACTGG 2 cut(s) 283, 1314
BseSI GKGCMC 1 cut(s) 1126
BseXI GCAGC 1 cut(s) 673
BseYI CCCAGC 2 cut(s) 17, 505
BsgI GTGCAG 1 cut(s) 408
BshFI GGCC 4 cut(s) 364, 590, 886, 1226
BshNI GGYRCC 1 cut(s) 1090
BshVI ATCGAT 1 cut(s) 268
BsiHKAI GWGCWC 2 cut(s) 798, 1126
BsiHKCI CYCGRG 1 cut(s) 929
BsiSI CCGG 2 cut(s) 958, 1465
BslI CCNNNNNNNGG 3 cut(s) 664, 719, 1620
BsmAI GTCTC 2 cut(s) 391, 1510
BsmBI CGTCTC 1 cut(s) 1510
BsmI GAATGC 1 cut(s) 586
BsnI GGCC 4 cut(s) 364, 590, 886, 1226
BsoBI CYCGRG 1 cut(s) 929
Bsp1286I GDGCHC 3 cut(s) 798, 938, 1126
Bsp1407I TGTACA 1 cut(s) 191
Bsp143I GATC 3 cut(s) 412, 860, 1076
Bsp19I CCATGG 1 cut(s) 1365
BspACI CCGC 7 cut(s) 94, 178, 249, 338, 625, 665, 668
BspANI GGCC 4 cut(s) 364, 590, 886, 1226
BspCNI CTCAG 1 cut(s) 244
BspDI ATCGAT 1 cut(s) 268
BspHI TCATGA 1 cut(s) 904
BspLI GGNNCC 2 cut(s) 414, 1092
BspMI ACCTGC 2 cut(s) 977, 1109
BspPI GGATC 3 cut(s) 407, 420, 868
BspT107I GGYRCC 1 cut(s) 1090
BsrDI GCAATG 2 cut(s) 660, 970
BsrGI TGTACA 1 cut(s) 191
BsrI ACTGG 2 cut(s) 283, 1314
BssECI CCNNGG 6 cut(s) 359, 1094, 1249, 1365, 1419, 1564
BssMI GATC 3 cut(s) 412, 860, 1076
BssNI GRCGYC 1 cut(s) 629
BssT1I CCWWGG 3 cut(s) 359, 1249, 1365
Bst2UI CCWGG 3 cut(s) 61, 1095, 1566
Bst4CI ACNGT 6 cut(s) 191, 322, 812, 1177, 1500, 1532
Bst6I CTCTTC 1 cut(s) 1463
BstACI GRCGYC 1 cut(s) 629
BstAPI GCANNNNNTGC 1 cut(s) 581
BstAUI TGTACA 1 cut(s) 191
BstC8I GCNNGC 3 cut(s) 94, 641, 1043
BstDEI CTNAG 1 cut(s) 231
BstDSI CCRYGG 1 cut(s) 1365
BstF5I GGATG 6 cut(s) 529, 778, 1057, 1288, 1294, 1342
BstKTI GATC 3 cut(s) 415, 863, 1079
BstMAI GTCTC 2 cut(s) 391, 1510
BstMBI GATC 3 cut(s) 412, 860, 1076
BstMWI GCNNNNNNNGC 5 cut(s) 581, 596, 649, 671, 802
BstNI CCWGG 3 cut(s) 61, 1095, 1566
BstNSI RCATGY 3 cut(s) 293, 331, 1045
BstSCI CCNGG 3 cut(s) 59, 1093, 1564
BstSFI CTRYAG 1 cut(s) 318
BstSLI GKGCMC 1 cut(s) 1126
BstV1I GCAGC 1 cut(s) 673
BstV2I GAAGAC 3 cut(s) 1320, 1562, 1612
BstX2I RGATCY 1 cut(s) 412
BstYI RGATCY 1 cut(s) 412
Bsu15I ATCGAT 1 cut(s) 268
Bsu36I CCTNAGG 1 cut(s) 231
BsuRI GGCC 4 cut(s) 364, 590, 886, 1226
BsuTUI ATCGAT 1 cut(s) 268
BtgI CCRYGG 1 cut(s) 1365
BtrI CACGTC 2 cut(s) 896, 1318
BtsCI GGATG 6 cut(s) 529, 778, 1057, 1288, 1294, 1342
BtsIMutI CAGTG 1 cut(s) 1537
BveI ACCTGC 2 cut(s) 977, 1109
Cac8I GCNNGC 3 cut(s) 94, 641, 1043
CciI TCATGA 1 cut(s) 904
Cfr13I GGNCC 2 cut(s) 589, 1246
ClaI ATCGAT 1 cut(s) 268
Csp6I GTAC 4 cut(s) 192, 494, 1161, 1371
CviAII CATG 9 cut(s) 214, 290, 328, 600, 872, 905, 1042, 1366, 1379
CviQI GTAC 4 cut(s) 192, 494, 1161, 1371
DdeI CTNAG 1 cut(s) 231
DpnI GATC 3 cut(s) 414, 862, 1078
DpnII GATC 3 cut(s) 412, 860, 1076
Eam1104I CTCTTC 1 cut(s) 1463
EarI CTCTTC 1 cut(s) 1463
Ecl136II GAGCTC 1 cut(s) 796
Eco130I CCWWGG 3 cut(s) 359, 1249, 1365
Eco24I GRGCYC 2 cut(s) 798, 938
Eco47I GGWCC 1 cut(s) 1246
Eco53kI GAGCTC 1 cut(s) 796
Eco81I CCTNAGG 1 cut(s) 231
Eco88I CYCGRG 1 cut(s) 929
EcoICRI GAGCTC 1 cut(s) 796
EcoRI GAATTC 1 cut(s) 64
EcoRII CCWGG 3 cut(s) 59, 1093, 1564
EcoT14I CCWWGG 3 cut(s) 359, 1249, 1365
EcoT22I ATGCAT 1 cut(s) 1047
EcoT38I GRGCYC 2 cut(s) 798, 938
ErhI CCWWGG 3 cut(s) 359, 1249, 1365
Esp3I CGTCTC 1 cut(s) 1510
FaeI CATG 9 cut(s) 217, 293, 331, 603, 875, 908, 1045, 1369, 1382
FatI CATG 9 cut(s) 213, 289, 327, 599, 871, 904, 1041, 1365, 1378
FauI CCCGC 3 cut(s) 101, 331, 661
Fnu4HI GCNGC 2 cut(s) 666, 687
FokI GGATG 6 cut(s) 516, 785, 1044, 1295, 1301, 1349
FriOI GRGCYC 2 cut(s) 798, 938
Fsp4HI GCNGC 2 cut(s) 666, 687
FspBI CTAG 8 cut(s) 294, 360, 767, 882, 1074, 1149, 1232, 1461
GluI GCNGC 2 cut(s) 666, 687
GsaI CCCAGC 2 cut(s) 21, 509
GsuI CTGGAG 2 cut(s) 27, 43
HaeIII GGCC 4 cut(s) 364, 590, 886, 1226
HapII CCGG 2 cut(s) 958, 1465
Hin1I GRCGYC 1 cut(s) 629
Hin1II CATG 9 cut(s) 217, 293, 331, 603, 875, 908, 1045, 1369, 1382
HincII GTYRAC 1 cut(s) 613
HindII GTYRAC 1 cut(s) 613
HinfI GANTC 2 cut(s) 270, 1387
HpaI GTTAAC 1 cut(s) 613
HpaII CCGG 2 cut(s) 958, 1465
HphI GGTGA 9 cut(s) 47, 123, 647, 991, 992, 1231, 1265, 1439, 1601
Hpy166II GTNNAC 2 cut(s) 613, 1124
Hpy188I TCNGA 3 cut(s) 718, 922, 1554
Hpy188III TCNNGA 6 cut(s) 905, 1074, 1080, 1133, 1149, 1391
Hpy8I GTNNAC 2 cut(s) 613, 1124
HpyCH4III ACNGT 6 cut(s) 191, 322, 812, 1177, 1500, 1532
HpyCH4IV ACGT 3 cut(s) 629, 895, 1317
HpyCH4V TGCA 8 cut(s) 202, 327, 425, 599, 643, 821, 1045, 1124
HpyF10VI GCNNNNNNNGC 5 cut(s) 581, 596, 649, 671, 802
HpyF3I CTNAG 1 cut(s) 231
HpySE526I ACGT 3 cut(s) 629, 895, 1317
Hsp92I GRCGYC 1 cut(s) 629
Hsp92II CATG 9 cut(s) 217, 293, 331, 603, 875, 908, 1045, 1369, 1382
KspAI GTTAAC 1 cut(s) 613
Kzo9I GATC 3 cut(s) 412, 860, 1076
LmnI GCTCC 3 cut(s) 671, 960, 1367
Lsp1109I GCAGC 1 cut(s) 673
LweI GCATC 1 cut(s) 830
MaeI CTAG 8 cut(s) 294, 360, 767, 882, 1074, 1149, 1232, 1461
MaeII ACGT 3 cut(s) 629, 895, 1317
MaeIII GTNAC 6 cut(s) 235, 285, 630, 751, 1171, 1589
MalI GATC 3 cut(s) 414, 862, 1078
MboI GATC 3 cut(s) 412, 860, 1076
MflI RGATCY 1 cut(s) 412
MhlI GDGCHC 3 cut(s) 798, 938, 1126
MmeI TCCRAC 1 cut(s) 123
Mph1103I ATGCAT 1 cut(s) 1047
MseI TTAA 7 cut(s) 158, 221, 368, 567, 612, 648, 699
MslI CAYNNNNRTG 2 cut(s) 1202, 1584
MspA1I CMGCKG 2 cut(s) 96, 1166
MspI CCGG 2 cut(s) 958, 1465
MspR9I CCNGG 3 cut(s) 61, 1095, 1566
Mva1269I GAATGC 1 cut(s) 586
MvaI CCWGG 3 cut(s) 61, 1095, 1566
MwoI GCNNNNNNNGC 5 cut(s) 581, 596, 649, 671, 802
NcoI CCATGG 1 cut(s) 1365
NdeII GATC 3 cut(s) 412, 860, 1076
NlaIII CATG 9 cut(s) 217, 293, 331, 603, 875, 908, 1045, 1369, 1382
NlaIV GGNNCC 2 cut(s) 414, 1092
NmuCI GTSAC 5 cut(s) 285, 630, 751, 1171, 1589
NsiI ATGCAT 1 cut(s) 1047
NspI RCATGY 3 cut(s) 293, 331, 1045
PaeI GCATGC 1 cut(s) 1045
PagI TCATGA 1 cut(s) 904
PaqCI CACCTGC 1 cut(s) 1109
PctI GAATGC 1 cut(s) 586
PfeI GAWTC 2 cut(s) 270, 1387
PflMI CCANNNNNTGG 1 cut(s) 719
PfoI TCCNGGA 1 cut(s) 59
PkrI GCNGC 2 cut(s) 667, 688
PsiI TTATAA 1 cut(s) 537
Psp124BI GAGCTC 1 cut(s) 798
Psp6I CCWGG 3 cut(s) 59, 1093, 1564
PspFI CCCAGC 2 cut(s) 17, 505
PspGI CCWGG 3 cut(s) 59, 1093, 1564
PspN4I GGNNCC 2 cut(s) 414, 1092
PspPI GGNCC 2 cut(s) 589, 1246
PsuI RGATCY 1 cut(s) 412
PvuII CAGCTG 1 cut(s) 1166
RsaI GTAC 4 cut(s) 193, 495, 1162, 1372
RsaNI GTAC 4 cut(s) 192, 494, 1161, 1371
RseI CAYNNNNRTG 2 cut(s) 1202, 1584
SacI GAGCTC 1 cut(s) 798
SaqAI TTAA 7 cut(s) 158, 221, 368, 567, 612, 648, 699
SatI GCNGC 2 cut(s) 666, 687
Sau3AI GATC 3 cut(s) 412, 860, 1076
Sau96I GGNCC 2 cut(s) 589, 1246
ScrFI CCNGG 3 cut(s) 61, 1095, 1566
SduI GDGCHC 3 cut(s) 798, 938, 1126
SfaNI GCATC 1 cut(s) 830
SfcI CTRYAG 1 cut(s) 318
SinI GGWCC 1 cut(s) 1246
SmiMI CAYNNNNRTG 2 cut(s) 1202, 1584
SmlI CTYRAG 2 cut(s) 791, 825
SmoI CTYRAG 2 cut(s) 791, 825
SphI GCATGC 1 cut(s) 1045
SsiI CCGC 7 cut(s) 94, 178, 249, 338, 625, 665, 668
SspMI CTAG 8 cut(s) 294, 360, 767, 882, 1074, 1149, 1232, 1461
SstI GAGCTC 1 cut(s) 798
StyD4I CCNGG 3 cut(s) 59, 1093, 1564
StyI CCWWGG 3 cut(s) 359, 1249, 1365
TaaI ACNGT 6 cut(s) 191, 322, 812, 1177, 1500, 1532
TaiI ACGT 3 cut(s) 632, 898, 1320
TaqI TCGA 4 cut(s) 268, 760, 840, 938
TatI WGTACW 2 cut(s) 191, 493
TauI GCSGC 1 cut(s) 668
TfiI GAWTC 2 cut(s) 270, 1387
Tru1I TTAA 7 cut(s) 158, 221, 368, 567, 612, 648, 699
Tru9I TTAA 7 cut(s) 158, 221, 368, 567, 612, 648, 699
TscAI CASTG 1 cut(s) 1537
TseFI GTSAC 5 cut(s) 285, 630, 751, 1171, 1589
TseI GCWGC 1 cut(s) 686
Tsp45I GTSAC 5 cut(s) 285, 630, 751, 1171, 1589
TspDTI ATGAA 5 cut(s) 18, 39, 87, 265, 921
TspRI CASTG 1 cut(s) 1537
Van91I CCANNNNNTGG 1 cut(s) 719
VneI GTGCAC 1 cut(s) 1122
VpaK11BI GGWCC 1 cut(s) 1246
XapI RAATTY 6 cut(s) 64, 127, 563, 604, 743, 916
XbaI TCTAGA 2 cut(s) 1073, 1148
XceI RCATGY 3 cut(s) 293, 331, 1045
XmaJI CCTAGG 1 cut(s) 359
XspI CTAG 8 cut(s) 294, 360, 767, 882, 1074, 1149, 1232, 1461
ZraI GACGTC 1 cut(s) 630
Zsp2I ATGCAT 1 cut(s) 1047
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.