MD10G1204200.v1.1

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
30330399 .. 30336657
6259 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1204200.v1.1.491

Sequence Viewer

Length: 1764 bp
ATGGCTAGTTCTTCCCCTGCTGAATCCACTCCTCATAGCGTGAATGATGGAAGTACCCATAAAGACATTCAGGACAGGATAGAGGAAGGATCCTATTGGTACTTCTTTAGAAAGGAAATTGAAGAAAATTCTCCATCTAGACGAGACGGCATTGACTTGAAGAAGGAGACACCCCAGTTGACGATTGCAACATCCATAATTTTCTGTCATCGATTCTTTCTTCGTCAATCACACGCAAAGAATGATAGAAGGACAATCGCGACAGTGTGTATGTTTCTTGCTGGGAAGGTTGAAGAAACTCCACGGCCACTAAAAGATGTTATCCTTGTGTCTTATGAAATTATGCACAAGAAAGATCCTAAAGCAGTACAAAGGATCAAGCAAAAGGAGGTATATGAACAGCAGAAGGAATTAATTTTACTTGGTGAGAGGGTTGTTCTTGGGACGCTTGGCTTTGATCTTAATGTACTCCATCCATATAAACCCCTCGTTGAAGCGATAAAGAGATTCAAAGTAGCTCAAAATGCCCTTGCTCAAGTTGCATGGAATTTTGTTAATGATGGACTTCGGACATCTCTATGTTTGCAATTTAAACCCCAGCACATTGCAGCTGGTGCCATTTTTCTTGCTGCCAAGTTCTTAAGAGTCAAGCTCCCGTCAGATGGCGAGACAATCTGGTGGCAAGAGTTTGACATCACCCCACGCCAATTGGAGGAAGTTAGCAATCAAATGTTGGAACTGTATGAACAAAATCGAGTTCCAGCTTCCAATCAAGTGGCAGGAAGTGGAGGCGCTCATCGGATTCCAGCCAAAGGTACAGCTAGCAATGAAGAACATGCTACAAGCAACTGTCATTTACAGGCTGGAGGTGCGAGGCCTGAAACCTTGAAACCTGCATCAGCTACACCAGCACCTGAGCAGTCAGATGTTGGAAATGATGATGGATCTCCTAGAACTAATCAATGTCAAAATAATGCCTACAGAAGTACAGAAGTAAAAAATGCTCTGGACCAGAATGTTGATGTAGAATTCAAAGATAATCAACACGCTGCACCATTGTCGTCCGATCAGGAGAAGATTGGAGATGCTCAAAACGTATCAGAATTTCAGTCAGCGGGATGTGGTGAAGAAGGTCTAGAAGATAATGGGAAACTTGATACAATAGAAGCCGAGAAATTGAAGGACAAACAATTAGGTCAAAGCCTGGAAAATGGGCAAGGTTCACTTGGCCAGTCACCCCAGGATGTTATAAAGAAGATTGACAGAAACAAGGTGAAGGCAGCACTGGAAAAACGACGGAAGAGCCAAGGGGATATGAGTCAAAAAAAGGATCTGATGGATGAGGATGATCTTATTGAGAGGGAACTCGAAGATGGTATTGAACTGGCTTCTTGGAGTGAGAAAGTAAAGGGAGATGGGAGTCAAAGCATGCCGAAGCCCTCAAGTACGCCAGAAAATGAGAACCTGCATCTAGGAAATCATCATGAGGGTGTCCGTGATGATGGAACTGATCTAAATAATGCCAAAGGTGAGGGGTCTGCACTTGCTGATGGTGGCCAAGGATCACCCATTTTCAGTGACCAGAAGAGAAAAGCAGTAAGCCCTCCTCCACTCGATGATGCAGAGAAGAAGCAGCGGCATGATTATGAACCTGGAACCCTGAACCATAATCAGTTTGATAATACAGAAGATCACATTATGGCGGGCCTGGTTGGACACAGCGATATGGATCACATAAGGCCAGTACAGGAAAATCCTGTCTGA

Protein Analysis

588

Amino Acids

65.15

Weight (kDa)

5.4

Isoelectric Point (pI)

51.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 58 - 155 1.6e-11 Cyclin, N-terminal domain
CycT2-like_C PF21797 158 - 245 2.2e-06 Cyclin-T2-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1250
Acc36I ACCTGC 2 cut(s) 901, 1473
AccB1I GGYRCC 1 cut(s) 614
AccII CGCG 1 cut(s) 260
AciI CCGC 3 cut(s) 1115, 1636, 1703
AclWI GGATC 8 cut(s) 84, 97, 350, 383, 952, 1338, 1570, 1737
AcoI YGGCCR 3 cut(s) 305, 1228, 1555
AcsI RAATTY 4 cut(s) 127, 547, 1028, 1103
AfaI GTAC 8 cut(s) 55, 101, 369, 468, 817, 988, 1447, 1746
AfiI CCNNNNNNNGG 3 cut(s) 662, 712, 812
AflII CTTAAG 1 cut(s) 640
AgsI TTSAA 9 cut(s) 122, 160, 293, 494, 511, 889, 1033, 1180, 1382
AjnI CCWGG 4 cut(s) 1203, 1239, 1651, 1707
AluBI AGCT 6 cut(s) 518, 611, 652, 764, 821, 902
AluI AGCT 6 cut(s) 518, 611, 652, 764, 821, 902
Alw26I GTCTC 3 cut(s) 138, 161, 662
AlwI GGATC 8 cut(s) 84, 97, 350, 383, 952, 1338, 1570, 1737
AlwNI CAGNNNCTG 1 cut(s) 914
AoxI GGCC 6 cut(s) 305, 875, 1228, 1555, 1705, 1739
ApeKI GCWGC 5 cut(s) 608, 629, 1049, 1280, 1633
ApoI RAATTY 4 cut(s) 127, 547, 1028, 1103
AseI ATTAAT 1 cut(s) 413
AspLEI GCGC 1 cut(s) 794
AspS9I GGNCC 2 cut(s) 1009, 1705
AsuHPI GGTGA 7 cut(s) 437, 688, 1136, 1227, 1285, 1541, 1557
AsuNHI GCTAGC 1 cut(s) 821
AvaII GGWCC 1 cut(s) 1009
BalI TGGCCA 2 cut(s) 1230, 1557
BamHI GGATCC 1 cut(s) 89
BanI GGYRCC 1 cut(s) 614
BbvI GCAGC 5 cut(s) 616, 620, 1036, 1292, 1645
BceAI ACGGC 2 cut(s) 163, 320
BcgI CGANNNNNNTGC 2 cut(s) 1041, 1075
BciT130I CCWGG 4 cut(s) 1205, 1241, 1653, 1709
BcoDI GTCTC 3 cut(s) 138, 161, 662
BfaI CTAG 6 cut(s) 6, 138, 822, 951, 1136, 1472
BfmI CTRYAG 1 cut(s) 979
BfoI RGCGCY 1 cut(s) 795
BfrI CTTAAG 1 cut(s) 640
BfuAI ACCTGC 2 cut(s) 901, 1473
BisI GCNGC 6 cut(s) 609, 630, 1050, 1281, 1634, 1637
BlsI GCNGC 6 cut(s) 610, 631, 1051, 1282, 1635, 1638
Bme1390I CCNGG 4 cut(s) 1205, 1241, 1653, 1709
Bme18I GGWCC 1 cut(s) 1009
BmgT120I GGNCC 2 cut(s) 1009, 1705
BmiI GGNNCC 3 cut(s) 91, 616, 1657
BmrFI CCNGG 4 cut(s) 1205, 1241, 1653, 1709
BmrI ACTGGG 1 cut(s) 169
BmsI GCATC 4 cut(s) 905, 1075, 1477, 1609
BmtI GCTAGC 1 cut(s) 825
BmuI ACTGGG 1 cut(s) 169
BplI GAGNNNNNCTC 2 cut(s) 636, 668
BpmI CTGGAG 1 cut(s) 885
Bpu10I CCTNAGC 1 cut(s) 915
BpuEI CTTGAG 2 cut(s) 519, 1426
Bsa29I ATCGAT 1 cut(s) 211
BsaBI GATNNNNATC 1 cut(s) 1728
BsaJI CCNNGG 4 cut(s) 302, 1239, 1306, 1558
Bsc4I CCNNNNNNNGG 3 cut(s) 662, 712, 812
Bse1I ACTGG 5 cut(s) 175, 1231, 1290, 1389, 1742
Bse3DI GCAATG 2 cut(s) 603, 832
Bse8I GATNNNNATC 1 cut(s) 1728
BseBI CCWGG 4 cut(s) 1205, 1241, 1653, 1709
BseCI ATCGAT 1 cut(s) 211
BseDI CCNNGG 4 cut(s) 302, 1239, 1306, 1558
BseGI GGATG 6 cut(s) 191, 472, 1124, 1249, 1345, 1351
BseJI GATNNNNATC 1 cut(s) 1728
BseLI CCNNNNNNNGG 3 cut(s) 662, 712, 812
BseMI GCAATG 2 cut(s) 603, 832
BseMII CTCAG 1 cut(s) 906
BseNI ACTGG 5 cut(s) 175, 1231, 1290, 1389, 1742
BseRI GAGGAG 2 cut(s) 21, 1596
BseXI GCAGC 5 cut(s) 616, 620, 1036, 1292, 1645
BseYI CCCAGC 2 cut(s) 281, 597
BsgI GTGCAG 2 cut(s) 1035, 1524
Bsh1236I CGCG 1 cut(s) 260
BshFI GGCC 6 cut(s) 307, 877, 1230, 1557, 1707, 1741
BshNI GGYRCC 1 cut(s) 614
BshVI ATCGAT 1 cut(s) 211
BslFI GGGAC 1 cut(s) 457
BslI CCNNNNNNNGG 3 cut(s) 662, 712, 812
BsmAI GTCTC 3 cut(s) 138, 161, 662
BsmBI CGTCTC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 457
BsnI GGCC 6 cut(s) 307, 877, 1230, 1557, 1707, 1741
Bsp68I TCGCGA 1 cut(s) 260
BspACI CCGC 3 cut(s) 1115, 1636, 1703
BspANI GGCC 6 cut(s) 307, 877, 1230, 1557, 1707, 1741
BspCNI CTCAG 1 cut(s) 907
BspDI ATCGAT 1 cut(s) 211
BspFNI CGCG 1 cut(s) 260
BspHI TCATGA 1 cut(s) 1483
BspLI GGNNCC 3 cut(s) 91, 616, 1657
BspMI ACCTGC 2 cut(s) 901, 1473
BspOI GCTAGC 1 cut(s) 825
BspPI GGATC 8 cut(s) 84, 97, 350, 383, 952, 1338, 1570, 1737
BspQI GCTCTTC 1 cut(s) 1295
BspT107I GGYRCC 1 cut(s) 614
BspTI CTTAAG 1 cut(s) 640
BsrDI GCAATG 2 cut(s) 603, 832
BsrI ACTGG 5 cut(s) 175, 1231, 1290, 1389, 1742
BssECI CCNNGG 4 cut(s) 302, 1239, 1306, 1558
BssT1I CCWWGG 2 cut(s) 1306, 1558
Bst2UI CCWGG 4 cut(s) 1205, 1241, 1653, 1709
Bst4CI ACNGT 3 cut(s) 265, 741, 851
Bst6I CTCTTC 2 cut(s) 1295, 1580
BstAFI CTTAAG 1 cut(s) 640
BstAPI GCANNNNNTGC 1 cut(s) 614
BstC8I GCNNGC 3 cut(s) 823, 1430, 1705
BstDEI CTNAG 1 cut(s) 915
BstDSI CCRYGG 1 cut(s) 302
BstF5I GGATG 6 cut(s) 191, 472, 1124, 1249, 1345, 1351
BstFNI CGCG 1 cut(s) 260
BstH2I RGCGCY 1 cut(s) 795
BstHHI GCGC 1 cut(s) 794
BstMAI GTCTC 3 cut(s) 138, 161, 662
BstMWI GCNNNNNNNGC 5 cut(s) 524, 539, 614, 869, 908
BstNI CCWGG 4 cut(s) 1205, 1241, 1653, 1709
BstNSI RCATGY 2 cut(s) 839, 1432
BstSCI CCNGG 4 cut(s) 1203, 1239, 1651, 1707
BstSFI CTRYAG 1 cut(s) 979
BstUI CGCG 1 cut(s) 260
BstV1I GCAGC 5 cut(s) 616, 620, 1036, 1292, 1645
BstX2I RGATCY 4 cut(s) 89, 355, 944, 1330
BstXI CCANNNNNNTGG 1 cut(s) 775
BstYI RGATCY 4 cut(s) 89, 355, 944, 1330
Bsu15I ATCGAT 1 cut(s) 211
BsuRI GGCC 6 cut(s) 307, 877, 1230, 1557, 1707, 1741
BsuTUI ATCGAT 1 cut(s) 211
BtgI CCRYGG 1 cut(s) 302
BtsCI GGATG 6 cut(s) 191, 472, 1124, 1249, 1345, 1351
BtsIMutI CAGTG 3 cut(s) 270, 1283, 1582
BtuMI TCGCGA 1 cut(s) 260
BveI ACCTGC 2 cut(s) 901, 1473
Cac8I GCNNGC 3 cut(s) 823, 1430, 1705
CaiI CAGNNNCTG 1 cut(s) 914
CciI TCATGA 1 cut(s) 1483
CfoI GCGC 1 cut(s) 794
Cfr13I GGNCC 2 cut(s) 1009, 1705
ClaI ATCGAT 1 cut(s) 211
CseI GACGC 1 cut(s) 454
Csp6I GTAC 8 cut(s) 54, 100, 368, 467, 816, 987, 1446, 1745
CspCI CAANNNNNGTGG 2 cut(s) 690, 725
CviAII CATG 5 cut(s) 543, 836, 1429, 1484, 1640
CviQI GTAC 8 cut(s) 54, 100, 368, 467, 816, 987, 1446, 1745
DdeI CTNAG 1 cut(s) 915
DraI TTTAAA 1 cut(s) 592
EaeI YGGCCR 3 cut(s) 305, 1228, 1555
Eam1104I CTCTTC 2 cut(s) 1295, 1580
EarI CTCTTC 2 cut(s) 1295, 1580
Eco130I CCWWGG 2 cut(s) 1306, 1558
Eco147I AGGCCT 1 cut(s) 877
Eco47I GGWCC 1 cut(s) 1009
EcoRI GAATTC 1 cut(s) 1028
EcoRII CCWGG 4 cut(s) 1203, 1239, 1651, 1707
EcoT14I CCWWGG 2 cut(s) 1306, 1558
ErhI CCWWGG 2 cut(s) 1306, 1558
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 5 cut(s) 546, 839, 1432, 1487, 1643
FalI AAGNNNNNCTT 2 cut(s) 1209, 1241
FaqI GGGAC 1 cut(s) 457
FatI CATG 5 cut(s) 542, 835, 1428, 1483, 1639
FauI CCCGC 2 cut(s) 1108, 1696
Fnu4HI GCNGC 6 cut(s) 609, 630, 1050, 1281, 1634, 1637
FokI GGATG 6 cut(s) 178, 459, 1131, 1256, 1352, 1358
Fsp4HI GCNGC 6 cut(s) 609, 630, 1050, 1281, 1634, 1637
FspBI CTAG 6 cut(s) 6, 138, 822, 951, 1136, 1472
GlaI GCGC 1 cut(s) 793
GluI GCNGC 6 cut(s) 609, 630, 1050, 1281, 1634, 1637
GsaI CCCAGC 2 cut(s) 285, 601
GsuI CTGGAG 1 cut(s) 885
HaeII RGCGCY 1 cut(s) 795
HaeIII GGCC 6 cut(s) 307, 877, 1230, 1557, 1707, 1741
HgaI GACGC 1 cut(s) 454
HhaI GCGC 1 cut(s) 794
Hin1II CATG 5 cut(s) 546, 839, 1432, 1487, 1643
Hin6I GCGC 1 cut(s) 792
HinP1I GCGC 1 cut(s) 792
HincII GTYRAC 1 cut(s) 180
HindII GTYRAC 1 cut(s) 180
HinfI GANTC 7 cut(s) 23, 213, 507, 645, 802, 1318, 1420
HphI GGTGA 7 cut(s) 437, 688, 1136, 1227, 1285, 1541, 1557
Hpy166II GTNNAC 2 cut(s) 180, 1223
Hpy188I TCNGA 8 cut(s) 570, 661, 801, 925, 1066, 1102, 1335, 1763
Hpy188III TCNNGA 7 cut(s) 71, 138, 259, 1007, 1070, 1136, 1484
Hpy8I GTNNAC 2 cut(s) 180, 1223
Hpy99I CGWCG 1 cut(s) 1299
HpyAV CCTTC 8 cut(s) 80, 157, 243, 280, 400, 1124, 1174, 1270
HpyCH4III ACNGT 3 cut(s) 265, 741, 851
HpyCH4IV ACGT 1 cut(s) 1095
HpyF10VI GCNNNNNNNGC 5 cut(s) 524, 539, 614, 869, 908
HpyF3I CTNAG 1 cut(s) 915
HpySE526I ACGT 1 cut(s) 1095
Hsp92II CATG 5 cut(s) 546, 839, 1432, 1487, 1643
HspAI GCGC 1 cut(s) 792
LguI GCTCTTC 1 cut(s) 1295
LmnI GCTCC 1 cut(s) 657
Lsp1109I GCAGC 5 cut(s) 616, 620, 1036, 1292, 1645
LweI GCATC 4 cut(s) 905, 1075, 1477, 1609
MaeI CTAG 6 cut(s) 6, 138, 822, 951, 1136, 1472
MaeII ACGT 1 cut(s) 1095
MaeIII GTNAC 2 cut(s) 1233, 1577
MfeI CAATTG 1 cut(s) 707
MflI RGATCY 4 cut(s) 89, 355, 944, 1330
MlsI TGGCCA 2 cut(s) 1230, 1557
MluNI TGGCCA 2 cut(s) 1230, 1557
MlyI GAGTC 3 cut(s) 654, 1327, 1429
MmeI TCCRAC 3 cut(s) 714, 910, 1693
Mox20I TGGCCA 2 cut(s) 1230, 1557
MscI TGGCCA 2 cut(s) 1230, 1557
MseI TTAA 5 cut(s) 413, 462, 555, 591, 641
MslI CAYNNNNRTG 3 cut(s) 577, 1488, 1644
Msp20I TGGCCA 2 cut(s) 1230, 1557
MspA1I CMGCKG 3 cut(s) 611, 1115, 1636
MspCI CTTAAG 1 cut(s) 640
MspR9I CCNGG 4 cut(s) 1205, 1241, 1653, 1709
MunI CAATTG 1 cut(s) 707
MvaI CCWGG 4 cut(s) 1205, 1241, 1653, 1709
MvnI CGCG 1 cut(s) 260
MwoI GCNNNNNNNGC 5 cut(s) 524, 539, 614, 869, 908
NheI GCTAGC 1 cut(s) 821
NlaIII CATG 5 cut(s) 546, 839, 1432, 1487, 1643
NlaIV GGNNCC 3 cut(s) 91, 616, 1657
NmeAIII GCCGAG 1 cut(s) 1195
NmuCI GTSAC 2 cut(s) 1233, 1577
NruI TCGCGA 1 cut(s) 260
NspI RCATGY 2 cut(s) 839, 1432
PaeI GCATGC 1 cut(s) 1432
PagI TCATGA 1 cut(s) 1483
PceI AGGCCT 1 cut(s) 877
PciSI GCTCTTC 1 cut(s) 1295
PfeI GAWTC 4 cut(s) 23, 213, 507, 802
PkrI GCNGC 6 cut(s) 610, 631, 1051, 1282, 1635, 1638
PleI GAGTC 3 cut(s) 653, 1326, 1428
PpsI GAGTC 3 cut(s) 653, 1326, 1428
PshBI ATTAAT 1 cut(s) 413
PsiI TTATAA 1 cut(s) 1250
Psp6I CCWGG 4 cut(s) 1203, 1239, 1651, 1707
PspFI CCCAGC 2 cut(s) 281, 597
PspGI CCWGG 4 cut(s) 1203, 1239, 1651, 1707
PspN4I GGNNCC 3 cut(s) 91, 616, 1657
PspPI GGNCC 2 cut(s) 1009, 1705
PstNI CAGNNNCTG 1 cut(s) 914
PsuI RGATCY 4 cut(s) 89, 355, 944, 1330
PvuII CAGCTG 1 cut(s) 611
RruI TCGCGA 1 cut(s) 260
RsaI GTAC 8 cut(s) 55, 101, 369, 468, 817, 988, 1447, 1746
RsaNI GTAC 8 cut(s) 54, 100, 368, 467, 816, 987, 1446, 1745
RseI CAYNNNNRTG 3 cut(s) 577, 1488, 1644
SapI GCTCTTC 1 cut(s) 1295
SaqAI TTAA 5 cut(s) 413, 462, 555, 591, 641
SatI GCNGC 6 cut(s) 609, 630, 1050, 1281, 1634, 1637
Sau96I GGNCC 2 cut(s) 1009, 1705
SchI GAGTC 3 cut(s) 654, 1327, 1429
ScrFI CCNGG 4 cut(s) 1205, 1241, 1653, 1709
SfaNI GCATC 4 cut(s) 905, 1075, 1477, 1609
SfcI CTRYAG 1 cut(s) 979
SinI GGWCC 1 cut(s) 1009
SmiMI CAYNNNNRTG 3 cut(s) 577, 1488, 1644
SmlI CTYRAG 3 cut(s) 534, 640, 1441
SmoI CTYRAG 3 cut(s) 534, 640, 1441
SphI GCATGC 1 cut(s) 1432
SseBI AGGCCT 1 cut(s) 877
SsiI CCGC 3 cut(s) 1115, 1636, 1703
SspMI CTAG 6 cut(s) 6, 138, 822, 951, 1136, 1472
StuI AGGCCT 1 cut(s) 877
StyD4I CCNGG 4 cut(s) 1203, 1239, 1651, 1707
StyI CCWWGG 2 cut(s) 1306, 1558
TaaI ACNGT 3 cut(s) 265, 741, 851
TaiI ACGT 1 cut(s) 1098
TaqI TCGA 4 cut(s) 211, 754, 1368, 1614
TatI WGTACW 4 cut(s) 367, 466, 986, 1744
TauI GCSGC 1 cut(s) 1639
TfiI GAWTC 4 cut(s) 23, 213, 507, 802
Tru1I TTAA 5 cut(s) 413, 462, 555, 591, 641
Tru9I TTAA 5 cut(s) 413, 462, 555, 591, 641
TscAI CASTG 3 cut(s) 270, 1290, 1582
TseFI GTSAC 2 cut(s) 1233, 1577
TseI GCWGC 5 cut(s) 608, 629, 1049, 1280, 1633
Tsp45I GTSAC 2 cut(s) 1233, 1577
TspDTI ATGAA 5 cut(s) 351, 411, 759, 843, 1662
TspGWI ACGGA 2 cut(s) 1312, 1484
TspRI CASTG 3 cut(s) 270, 1290, 1582
Vha464I CTTAAG 1 cut(s) 640
VpaK11BI GGWCC 1 cut(s) 1009
VspI ATTAAT 1 cut(s) 413
XapI RAATTY 4 cut(s) 127, 547, 1028, 1103
XbaI TCTAGA 2 cut(s) 137, 1135
XceI RCATGY 2 cut(s) 839, 1432
XspI CTAG 6 cut(s) 6, 138, 822, 951, 1136, 1472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.