MD10G1204100.v1.1

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
30316448 .. 30321832
5385 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1204100.v1.1.491

Sequence Viewer

Length: 1746 bp
ATGGCTTCTTTCTTGTCTGGTGATTCCTCTAATTATGGAATGAGTGAAGGTGGTTCCTATAAACACACTCATGACATATCAGATGAAGGAGCCAATTGGTACTTTTCCAGGAAGGAAATTGAAGAAAACTCTCCATCTAAACGAGATGGCATTGACTTAAAAAAAGAGGCATATCTGCGCAAGTCATACTGTACTTTTTTACAAGACCTGGGGATGAGACTTAAAGTACCTCAGGTAACAATTGCGACAGCCATAATTTTCTGCCACCGATTCTTCCTTTGCCAATCCCATGCAAAGAATGATAGATGGACCATCGCAACGGTGTGTATGTTTCTTGCTGGGAAGGTTGAAGAAACTCCCAGGCCGCTGAAAGATGTTATTCTTGTCTCATATGAAATTATTTATAAAAAGGATCCTGCAGCAGTTCATAGAATCAAGCAAAAGGAGGTATATGAACAGCAGAAAGAATTAATTTTACTCGGAGAGAGGGTTGTTCTTGGAACCCTTGCTTTCGATTTTAATGTACACCATCCATATAAACCCCTGGTTGAGGCAATAAAGAAATTCAAAGTAGCTCAAAATGCCCTTGCCCAAGTTGCATGGAATTTTGTAAATGATGGACTTCGGACATCACTTTGCTTGCAATTTAAGCCCCACCACATTGCGGCTGGTGCCATTTTTCTTGCTGCTAAGTTCCTCAAAGTAAAGCTTCCATCAGATGGCGAGAAGGTCTGGTGGCAAGAGTTTGATGTCACCCCACGCCAATTGGAGGAGGTTAGCAATCAAATGCTGGAACTATATGAACAAAATCGGTTACTGCCTTCCAGTGACGTTGAAGGAAGTTCAGTGAGTGGTGCTATTCATCAGGCTTCTGCAAAACCTACGACCAGCAATGATGAACAAGCAACAGGCAACAGTCATTTGCATGCTGGAGTTACAAGACCTGGGACCTCAAAGCTAGCATCGAGGCAAGGGGGTGAGCAGTCATATGCTGAGAATGGTGGACCTGCTAGAACAACCCAAAGTCAAAATAATGACTACAGAAATGCTGAATTGAAAAGTGCCGCAGAGCAGAATATGGATGCTGAACTTCAACCCCCTGAAGCGCCACTGCACCAGGAGAAGGTGGGTGAAGCTCATGTATCAAGGTTTGTATCAGAGGGACATAGTGAAGATGGTCAAGAAAGAGAGAGCAATGTCGGGAAAGGTGAAACAAGGGAAGGACGGGAACCAAAGGACAAACATTTTGGCCGAAATCTGGATAATAGGCAAAGTGCACATGGCCGATCACCTCAGGAAGCTATAAAAAAAATTGACAAGGACAAGGTAAGGGCAGCACTTGAGAAACGAAGGAAAGCTGTTGCCGATGTCACTCGAAAGACAGATTTTCTGAATGAGGATGATTTGATTGAGAAAGAACTGGAAGATGGTATTGAACTGGCTTCAGGGAGTGAGAAAAACAAGCGGGACCGGAGGCAAAGCTGGCCGAAGCCCTCAAATAGACCAGAACATGGAGATGGACCACATTTAAACAATATAGAAGAAGGTGAGGTATCGGCACTTGATTCAGGGCAAGTATTTCATTCACCCAAGTCAAGCAGTCGCAAGAGAAAGGCAGGAAGCCCACCAGATGATCACCGTAATCACCGCAATCACAGTGATTATACAGATGATCGTAACAGAGTGGGCCGGGTTGGACACACAGAAAGAGATAACAAAAGGCATTCACAGGAGAATCATGTGTGA

Protein Analysis

582

Amino Acids

65.47

Weight (kDa)

7.16

Isoelectric Point (pI)

47.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 39 - 173 3.2e-15 Cyclin, N-terminal domain
CycT2-like_C PF21797 177 - 264 2.3e-07 Cyclin-T2-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 405
Acc16I TGCGCA 1 cut(s) 179
Acc36I ACCTGC 1 cut(s) 1015
AccB1I GGYRCC 1 cut(s) 671
AccB7I CCANNNNNTGG 2 cut(s) 719, 1511
AciI CCGC 5 cut(s) 365, 665, 1065, 1465, 1648
AclWI GGATC 2 cut(s) 407, 420
AcoI YGGCCR 3 cut(s) 1249, 1282, 1484
AcsI RAATTY 2 cut(s) 563, 604
AcuI CTGAAG 2 cut(s) 1122, 1428
AfaI GTAC 4 cut(s) 101, 193, 228, 525
AfiI CCNNNNNNNGG 7 cut(s) 550, 664, 719, 769, 1123, 1258, 1511
AgsI TTSAA 7 cut(s) 122, 350, 568, 836, 1057, 1094, 1436
AjnI CCWGG 6 cut(s) 107, 207, 359, 543, 943, 1116
AluBI AGCT 7 cut(s) 575, 709, 958, 1136, 1301, 1358, 1482
AluI AGCT 7 cut(s) 575, 709, 958, 1136, 1301, 1358, 1482
Alw21I GWGCWC 1 cut(s) 1279
Alw26I GTCTC 2 cut(s) 211, 391
Alw44I GTGCAC 1 cut(s) 1275
AlwI GGATC 2 cut(s) 407, 420
AoxI GGCC 5 cut(s) 362, 1249, 1282, 1484, 1687
ApaLI GTGCAC 1 cut(s) 1275
ApeKI GCWGC 3 cut(s) 419, 686, 1334
ApoI RAATTY 2 cut(s) 563, 604
ArsI GACNNNNNNTTYG 2 cut(s) 1229, 1261
AseI ATTAAT 1 cut(s) 470
AspLEI GCGC 2 cut(s) 180, 1108
AspS9I GGNCC 6 cut(s) 309, 948, 1004, 1468, 1520, 1687
AsuC2I CCSGG 1 cut(s) 1691
AsuNHI GCTAGC 1 cut(s) 958
AvaII GGWCC 5 cut(s) 309, 948, 1004, 1468, 1520
AxyI CCTNAGG 2 cut(s) 231, 1293
BaeGI GKGCMC 1 cut(s) 1279
BamHI GGATCC 1 cut(s) 412
BanI GGYRCC 1 cut(s) 671
Bbv12I GWGCWC 1 cut(s) 1279
BbvI GCAGC 3 cut(s) 431, 673, 1346
BciT130I CCWGG 6 cut(s) 109, 209, 361, 545, 945, 1118
BclI TGATCA 1 cut(s) 1633
BcnI CCSGG 1 cut(s) 1691
BcoDI GTCTC 2 cut(s) 211, 391
BfaI CTAG 2 cut(s) 959, 1011
BfmI CTRYAG 2 cut(s) 417, 1039
BfoI RGCGCY 1 cut(s) 1109
BfuAI ACCTGC 1 cut(s) 1015
BisI GCNGC 6 cut(s) 365, 420, 666, 687, 1065, 1335
BlsI GCNGC 6 cut(s) 366, 421, 667, 688, 1066, 1336
Bme1390I CCNGG 7 cut(s) 109, 209, 361, 545, 945, 1118, 1691
Bme18I GGWCC 5 cut(s) 309, 948, 1004, 1468, 1520
BmgT120I GGNCC 6 cut(s) 309, 948, 1004, 1468, 1520, 1687
BmiI GGNNCC 8 cut(s) 55, 91, 414, 502, 673, 949, 1230, 1469
BmrFI CCNGG 7 cut(s) 109, 209, 361, 545, 945, 1118, 1691
BmsI GCATC 2 cut(s) 971, 1072
BmtI GCTAGC 1 cut(s) 962
BpmI CTGGAG 1 cut(s) 951
BpuEI CTTGAG 1 cut(s) 1361
BpuMI CCSGG 1 cut(s) 1691
BsaJI CCNNGG 4 cut(s) 208, 359, 543, 944
BsaWI WCCGGW 1 cut(s) 1470
BsaXI ACNNNNNCTCC 2 cut(s) 474, 504
Bsc4I CCNNNNNNNGG 7 cut(s) 550, 664, 719, 769, 1123, 1258, 1511
Bse1I ACTGG 3 cut(s) 825, 1425, 1443
Bse21I CCTNAGG 2 cut(s) 231, 1293
Bse3DI GCAATG 3 cut(s) 660, 898, 1201
BseBI CCWGG 6 cut(s) 109, 209, 361, 545, 945, 1118
BseDI CCNNGG 4 cut(s) 208, 359, 543, 944
BseGI GGATG 4 cut(s) 219, 529, 1087, 1405
BseLI CCNNNNNNNGG 7 cut(s) 550, 664, 719, 769, 1123, 1258, 1511
BseMI GCAATG 3 cut(s) 660, 898, 1201
BseMII CTCAG 3 cut(s) 245, 984, 1307
BseNI ACTGG 3 cut(s) 825, 1425, 1443
BseRI GAGGAG 1 cut(s) 785
BseSI GKGCMC 1 cut(s) 1279
BseXI GCAGC 3 cut(s) 431, 673, 1346
BseYI CCCAGC 1 cut(s) 338
BsgI GTGCAG 1 cut(s) 1097
BshFI GGCC 5 cut(s) 364, 1251, 1284, 1486, 1689
BshNI GGYRCC 1 cut(s) 671
BsiHKAI GWGCWC 1 cut(s) 1279
BsiSI CCGG 2 cut(s) 1471, 1690
BslFI GGGAC 3 cut(s) 961, 1176, 1481
BslI CCNNNNNNNGG 7 cut(s) 550, 664, 719, 769, 1123, 1258, 1511
BsmAI GTCTC 2 cut(s) 211, 391
BsmFI GGGAC 3 cut(s) 961, 1176, 1481
BsmI GAATGC 1 cut(s) 1723
BsnI GGCC 5 cut(s) 364, 1251, 1284, 1486, 1689
Bsp1286I GDGCHC 1 cut(s) 1279
Bsp1407I TGTACA 1 cut(s) 523
Bsp143I GATC 4 cut(s) 412, 1286, 1633, 1672
BspACI CCGC 5 cut(s) 365, 665, 1065, 1465, 1648
BspANI GGCC 5 cut(s) 364, 1251, 1284, 1486, 1689
BspCNI CTCAG 3 cut(s) 244, 985, 1306
BspHI TCATGA 1 cut(s) 70
BspLI GGNNCC 8 cut(s) 55, 91, 414, 502, 673, 949, 1230, 1469
BspMAI CTGCAG 1 cut(s) 421
BspMI ACCTGC 1 cut(s) 1015
BspOI GCTAGC 1 cut(s) 962
BspPI GGATC 2 cut(s) 407, 420
BspT107I GGYRCC 1 cut(s) 671
BsrDI GCAATG 3 cut(s) 660, 898, 1201
BsrGI TGTACA 1 cut(s) 523
BsrI ACTGG 3 cut(s) 825, 1425, 1443
BssECI CCNNGG 4 cut(s) 208, 359, 543, 944
BssMI GATC 4 cut(s) 412, 1286, 1633, 1672
Bst2UI CCWGG 6 cut(s) 109, 209, 361, 545, 945, 1118
Bst4CI ACNGT 5 cut(s) 191, 322, 917, 1640, 1658
BstAUI TGTACA 1 cut(s) 523
BstC8I GCNNGC 4 cut(s) 641, 927, 960, 1484
BstDEI CTNAG 4 cut(s) 231, 690, 993, 1293
BstENI CCTNNNNNAGG 1 cut(s) 548
BstF5I GGATG 4 cut(s) 219, 529, 1087, 1405
BstH2I RGCGCY 1 cut(s) 1109
BstHHI GCGC 2 cut(s) 180, 1108
BstKTI GATC 4 cut(s) 415, 1289, 1636, 1675
BstMAI GTCTC 2 cut(s) 211, 391
BstMBI GATC 4 cut(s) 412, 1286, 1633, 1672
BstMWI GCNNNNNNNGC 5 cut(s) 581, 596, 649, 671, 1483
BstNI CCWGG 6 cut(s) 109, 209, 361, 545, 945, 1118
BstNSI RCATGY 1 cut(s) 929
BstSCI CCNGG 7 cut(s) 107, 207, 359, 543, 943, 1116, 1689
BstSFI CTRYAG 2 cut(s) 417, 1039
BstSLI GKGCMC 1 cut(s) 1279
BstV1I GCAGC 3 cut(s) 431, 673, 1346
BstX2I RGATCY 1 cut(s) 412
BstYI RGATCY 1 cut(s) 412
Bsu36I CCTNAGG 2 cut(s) 231, 1293
BsuRI GGCC 5 cut(s) 364, 1251, 1284, 1486, 1689
BtgZI GCGATG 1 cut(s) 298
BtsCI GGATG 4 cut(s) 219, 529, 1087, 1405
BtsI GCAGTG 1 cut(s) 1109
BtsIMutI CAGTG 4 cut(s) 832, 852, 1109, 1663
BveI ACCTGC 1 cut(s) 1015
Cac8I GCNNGC 4 cut(s) 641, 927, 960, 1484
CciI TCATGA 1 cut(s) 70
CfoI GCGC 2 cut(s) 180, 1108
Cfr13I GGNCC 6 cut(s) 309, 948, 1004, 1468, 1520, 1687
Csp6I GTAC 4 cut(s) 100, 192, 227, 524
CspCI CAANNNNNGTGG 2 cut(s) 747, 782
CviAII CATG 8 cut(s) 71, 290, 600, 926, 1139, 1280, 1511, 1739
CviQI GTAC 4 cut(s) 100, 192, 227, 524
DdeI CTNAG 4 cut(s) 231, 690, 993, 1293
DpnI GATC 4 cut(s) 414, 1288, 1635, 1674
DpnII GATC 4 cut(s) 412, 1286, 1633, 1672
DraI TTTAAA 1 cut(s) 1530
EaeI YGGCCR 3 cut(s) 1249, 1282, 1484
Eco47I GGWCC 5 cut(s) 309, 948, 1004, 1468, 1520
Eco57I CTGAAG 2 cut(s) 1122, 1428
Eco81I CCTNAGG 2 cut(s) 231, 1293
EcoNI CCTNNNNNAGG 1 cut(s) 548
EcoO109I RGGNCCY 1 cut(s) 948
EcoRII CCWGG 6 cut(s) 107, 207, 359, 543, 943, 1116
FaeI CATG 8 cut(s) 74, 293, 603, 929, 1142, 1283, 1514, 1742
FalI AAGNNNNNCTT 2 cut(s) 693, 725
FaqI GGGAC 3 cut(s) 961, 1176, 1481
FatI CATG 8 cut(s) 70, 289, 599, 925, 1138, 1279, 1510, 1738
FauI CCCGC 1 cut(s) 1458
FauNDI CATATG 2 cut(s) 391, 988
FbaI TGATCA 1 cut(s) 1633
Fnu4HI GCNGC 6 cut(s) 365, 420, 666, 687, 1065, 1335
FokI GGATG 4 cut(s) 226, 516, 1094, 1412
Fsp4HI GCNGC 6 cut(s) 365, 420, 666, 687, 1065, 1335
FspBI CTAG 2 cut(s) 959, 1011
FspI TGCGCA 1 cut(s) 179
GlaI GCGC 2 cut(s) 179, 1107
GluI GCNGC 6 cut(s) 365, 420, 666, 687, 1065, 1335
GsaI CCCAGC 1 cut(s) 342
GsuI CTGGAG 1 cut(s) 951
HaeII RGCGCY 1 cut(s) 1109
HaeIII GGCC 5 cut(s) 364, 1251, 1284, 1486, 1689
HapII CCGG 2 cut(s) 1471, 1690
HhaI GCGC 2 cut(s) 180, 1108
Hin1II CATG 8 cut(s) 74, 293, 603, 929, 1142, 1283, 1514, 1742
Hin6I GCGC 2 cut(s) 178, 1106
HinP1I GCGC 2 cut(s) 178, 1106
HindIII AAGCTT 1 cut(s) 707
HinfI GANTC 5 cut(s) 23, 270, 432, 1565, 1735
HpaII CCGG 2 cut(s) 1471, 1690
Hpy166II GTNNAC 3 cut(s) 526, 1004, 1277
Hpy188I TCNGA 6 cut(s) 82, 482, 627, 718, 1159, 1392
Hpy188III TCNNGA 5 cut(s) 71, 1181, 1201, 1259, 1295
Hpy8I GTNNAC 3 cut(s) 526, 1004, 1277
HpyCH4III ACNGT 5 cut(s) 191, 322, 917, 1640, 1658
HpyCH4IV ACGT 1 cut(s) 831
HpyCH4V TGCA 8 cut(s) 293, 419, 599, 643, 875, 925, 1114, 1277
HpyF10VI GCNNNNNNNGC 5 cut(s) 581, 596, 649, 671, 1483
HpyF3I CTNAG 4 cut(s) 231, 690, 993, 1293
HpySE526I ACGT 1 cut(s) 831
Hsp92II CATG 8 cut(s) 74, 293, 603, 929, 1142, 1283, 1514, 1742
HspAI GCGC 2 cut(s) 178, 1106
Ksp22I TGATCA 1 cut(s) 1633
Kzo9I GATC 4 cut(s) 412, 1286, 1633, 1672
LmnI GCTCC 1 cut(s) 89
Lsp1109I GCAGC 3 cut(s) 431, 673, 1346
LweI GCATC 2 cut(s) 971, 1072
MaeI CTAG 2 cut(s) 959, 1011
MaeII ACGT 1 cut(s) 831
MaeIII GTNAC 7 cut(s) 235, 751, 813, 827, 934, 1369, 1676
MalI GATC 4 cut(s) 414, 1288, 1635, 1674
MboI GATC 4 cut(s) 412, 1286, 1633, 1672
MboII GAAGA 6 cut(s) 134, 265, 362, 1184, 1436, 1553
MfeI CAATTG 3 cut(s) 94, 240, 764
MflI RGATCY 1 cut(s) 412
MhlI GDGCHC 1 cut(s) 1279
MmeI TCCRAC 1 cut(s) 1675
MseI TTAA 6 cut(s) 158, 222, 470, 519, 648, 1529
MslI CAYNNNNRTG 3 cut(s) 69, 924, 1515
MspA1I CMGCKG 1 cut(s) 367
MspI CCGG 2 cut(s) 1471, 1690
MspR9I CCNGG 7 cut(s) 109, 209, 361, 545, 945, 1118, 1691
MunI CAATTG 3 cut(s) 94, 240, 764
Mva1269I GAATGC 1 cut(s) 1723
MvaI CCWGG 6 cut(s) 109, 209, 361, 545, 945, 1118
MwoI GCNNNNNNNGC 5 cut(s) 581, 596, 649, 671, 1483
NciI CCSGG 1 cut(s) 1691
NdeI CATATG 2 cut(s) 391, 988
NdeII GATC 4 cut(s) 412, 1286, 1633, 1672
NheI GCTAGC 1 cut(s) 958
NlaIII CATG 8 cut(s) 74, 293, 603, 929, 1142, 1283, 1514, 1742
NlaIV GGNNCC 8 cut(s) 55, 91, 414, 502, 673, 949, 1230, 1469
NmuCI GTSAC 3 cut(s) 751, 827, 1369
NsbI TGCGCA 1 cut(s) 179
NspI RCATGY 1 cut(s) 929
PaeI GCATGC 1 cut(s) 929
PagI TCATGA 1 cut(s) 70
PctI GAATGC 1 cut(s) 1723
PfeI GAWTC 5 cut(s) 23, 270, 432, 1565, 1735
PflMI CCANNNNNTGG 2 cut(s) 719, 1511
PfoI TCCNGGA 1 cut(s) 107
PkrI GCNGC 6 cut(s) 366, 421, 667, 688, 1066, 1336
PpuMI RGGWCCY 1 cut(s) 948
PshBI ATTAAT 1 cut(s) 470
PsiI TTATAA 1 cut(s) 405
Psp5II RGGWCCY 1 cut(s) 948
Psp6I CCWGG 6 cut(s) 107, 207, 359, 543, 943, 1116
PspFI CCCAGC 1 cut(s) 338
PspGI CCWGG 6 cut(s) 107, 207, 359, 543, 943, 1116
PspN4I GGNNCC 8 cut(s) 55, 91, 414, 502, 673, 949, 1230, 1469
PspPI GGNCC 6 cut(s) 309, 948, 1004, 1468, 1520, 1687
PspPPI RGGWCCY 1 cut(s) 948
PstI CTGCAG 1 cut(s) 421
PsuI RGATCY 1 cut(s) 412
RsaI GTAC 4 cut(s) 101, 193, 228, 525
RsaNI GTAC 4 cut(s) 100, 192, 227, 524
RseI CAYNNNNRTG 3 cut(s) 69, 924, 1515
SaqAI TTAA 6 cut(s) 158, 222, 470, 519, 648, 1529
SatI GCNGC 6 cut(s) 365, 420, 666, 687, 1065, 1335
Sau3AI GATC 4 cut(s) 412, 1286, 1633, 1672
Sau96I GGNCC 6 cut(s) 309, 948, 1004, 1468, 1520, 1687
ScrFI CCNGG 7 cut(s) 109, 209, 361, 545, 945, 1118, 1691
SduI GDGCHC 1 cut(s) 1279
SfaNI GCATC 2 cut(s) 971, 1072
SfcI CTRYAG 2 cut(s) 417, 1039
SinI GGWCC 5 cut(s) 309, 948, 1004, 1468, 1520
SmiMI CAYNNNNRTG 3 cut(s) 69, 924, 1515
SmlI CTYRAG 1 cut(s) 1340
SmoI CTYRAG 1 cut(s) 1340
SphI GCATGC 1 cut(s) 929
SsiI CCGC 5 cut(s) 365, 665, 1065, 1465, 1648
SspMI CTAG 2 cut(s) 959, 1011
StyD4I CCNGG 7 cut(s) 107, 207, 359, 543, 943, 1116, 1689
TaaI ACNGT 5 cut(s) 191, 322, 917, 1640, 1658
TaiI ACGT 1 cut(s) 834
TaqI TCGA 3 cut(s) 513, 965, 1375
TatI WGTACW 2 cut(s) 191, 523
TauI GCSGC 3 cut(s) 367, 668, 1067
TfiI GAWTC 5 cut(s) 23, 270, 432, 1565, 1735
Tru1I TTAA 6 cut(s) 158, 222, 470, 519, 648, 1529
Tru9I TTAA 6 cut(s) 158, 222, 470, 519, 648, 1529
TscAI CASTG 4 cut(s) 832, 852, 1116, 1663
TseFI GTSAC 3 cut(s) 751, 827, 1369
TseI GCWGC 3 cut(s) 419, 686, 1334
Tsp45I GTSAC 3 cut(s) 751, 827, 1369
TspDTI ATGAA 8 cut(s) 99, 408, 416, 468, 816, 851, 912, 1571
TspRI CASTG 4 cut(s) 832, 852, 1116, 1663
Van91I CCANNNNNTGG 2 cut(s) 719, 1511
VneI GTGCAC 1 cut(s) 1275
VpaK11BI GGWCC 5 cut(s) 309, 948, 1004, 1468, 1520
VspI ATTAAT 1 cut(s) 470
XagI CCTNNNNNAGG 1 cut(s) 548
XapI RAATTY 2 cut(s) 563, 604
XceI RCATGY 1 cut(s) 929
XcmI CCANNNNNNNNNTGG 1 cut(s) 665
XspI CTAG 2 cut(s) 959, 1011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.