Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8230253.1

Orthogroup ID

OG0001562

Physical Location & Seq

Genomic Coordinates Reverse (-)

79 .. 727

Gene Structure 649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8230253.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgataatcgaggtatatgaacagcagaaagaactaattcttagtggagagagggttgttcttgcaactcttggttttgatcttaatttactgcatccttataaaccccttgttgaggcgataaagaaatttaaagtagctcaaaatgcccttgctcaagttgcatggaatttcgtcaatgatggacttcggacatctctttgcttgcaatttaaaccccaccacattgcagctggtgccattttcctcgctgccaaattcctcaaagtaaagctcccgtcagatggagagaaggtctggtggcaagagtttgacgtcaccccacgccagttggagggtgggtgtcctcattttaattcagtaggtgatgctacagagcaatcaacagtgtccgtttcccaccctttgttctccatcagtccagattttcctccattattttttctgcccttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

151

Amino Acids

16.94

Weight (kDa)

6.18

Isoelectric Point (pI)

32.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19600 AT5G45190 AT5G45190 AT5G45190
fragaria_vesca	FvH4_3g15520 FvH4_3g15520 FvH4_3g15520 FvH4_3g15521 FvH4_3g15521
malus_domestica	MD05G1222500.v1.1 MD05G1222600.v1.1 MD10G1204100.v1.1 MD10G1204200.v1.1
prunus_persica	Prupe.4G137700_v2.0.a1 Prupe.4G137800_v2.0.a1
pyrus_communis	pycom05g20520 pycom10g17480 pycom10g17490
rosa_chinensis	RchiOBHm_Chr5g0026141 RchiOBHm_Chr5g0026151
rosa_laevigata	RLG00000032906 RLG00000032907
rosa_multiflora	Rmu_co8230253.1_g000001 Rmu_co8464075.1_g000001 Rmu_sc0002806.1_g000001 Rmu_sc0002909.1_g000016 Rmu_sc0009679.1_g000001 Rmu_sc0009679.1_g000002 Rmu_sc0029141.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053050 Rroxscaffold_1G00053160 Rroxscaffold_1G00053170
rosa_rugosa	Rorug05G0091000.1
rosa_samantha	Rh2CG288400 Rh5AG183800 Rh5AG183900 Rh5AG184000 Rh5BG180600 Rh5BG180700 Rh5BG180800 Rh5CG199600 Rh5CG199700 Rh5CG199800 Rh5CG201400 Rh5DG182200 Rh5DG182300 Rh5DG182400
rosa_wichuraiana	Rw5G016640 Rw5G016650 Rw5G016810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	102
AatII	GACGTC	1 cut(s)	318
AccB1I	GGYRCC	1 cut(s)	236
AcsI	RAATTY	3 cut(s)	128, 169, 257
AcyI	GRCGYC	1 cut(s)	315
AfiI	CCNNNNNNNGG	3 cut(s)	115, 284, 334
AluBI	AGCT	3 cut(s)	140, 233, 274
AluI	AGCT	3 cut(s)	140, 233, 274
ApeKI	GCWGC	2 cut(s)	230, 251
ApoI	RAATTY	3 cut(s)	128, 169, 257
Asp700I	GAANNNNTTC	1 cut(s)	36
AsuHPI	GGTGA	2 cut(s)	310, 377
BanI	GGYRCC	1 cut(s)	236
BbvI	GCAGC	2 cut(s)	238, 242
BccI	CCATC	3 cut(s)	176, 278, 422
BfmI	CTRYAG	1 cut(s)	372
BisI	GCNGC	2 cut(s)	231, 252
BlsI	GCNGC	2 cut(s)	232, 253
BmiI	GGNNCC	1 cut(s)	238
BmsI	GCATC	2 cut(s)	103, 358
BpuEI	CTTGAG	1 cut(s)	141
BsaHI	GRCGYC	1 cut(s)	315
BsaXI	ACNNNNNCTCC	6 cut(s)	39, 69, 279, 309, 326, 356
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 284, 334
Bse1I	ACTGG	1 cut(s)	328
Bse3DI	GCAATG	1 cut(s)	225
BseGI	GGATG	1 cut(s)	94
BseLI	CCNNNNNNNGG	3 cut(s)	115, 284, 334
BseMI	GCAATG	1 cut(s)	225
BseNI	ACTGG	1 cut(s)	328
BseXI	GCAGC	2 cut(s)	238, 242
BshNI	GGYRCC	1 cut(s)	236
BslI	CCNNNNNNNGG	3 cut(s)	115, 284, 334
Bsp143I	GATC	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	238
BspT107I	GGYRCC	1 cut(s)	236
BsrDI	GCAATG	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	328
BssMI	GATC	1 cut(s)	79
BssNI	GRCGYC	1 cut(s)	315
Bst4CI	ACNGT	1 cut(s)	388
BstACI	GRCGYC	1 cut(s)	315
BstAPI	GCANNNNNTGC	1 cut(s)	236
BstC8I	GCNNGC	1 cut(s)	206
BstDEI	CTNAG	1 cut(s)	41
BstENI	CCTNNNNNAGG	1 cut(s)	113
BstF5I	GGATG	1 cut(s)	94
BstKTI	GATC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	79
BstMWI	GCNNNNNNNGC	3 cut(s)	146, 161, 236
BstSFI	CTRYAG	1 cut(s)	372
BstV1I	GCAGC	2 cut(s)	238, 242
BtsCI	GGATG	1 cut(s)	94
BtsIMutI	CAGTG	1 cut(s)	393
Cac8I	GCNNGC	1 cut(s)	206
CspCI	CAANNNNNGTGG	2 cut(s)	312, 347
CviAII	CATG	1 cut(s)	165
CviJI	RGCY	3 cut(s)	140, 233, 274
CviKI_1	RGCY	3 cut(s)	140, 233, 274
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
DraI	TTTAAA	2 cut(s)	133, 214
EcoNI	CCTNNNNNAGG	1 cut(s)	113
FaeI	CATG	1 cut(s)	168
FaiI	YATR	4 cut(s)	16, 18, 102, 166
FatI	CATG	1 cut(s)	164
Fnu4HI	GCNGC	2 cut(s)	231, 252
FokI	GGATG	1 cut(s)	81
Fsp4HI	GCNGC	2 cut(s)	231, 252
GluI	GCNGC	2 cut(s)	231, 252
Hin1I	GRCGYC	1 cut(s)	315
Hin1II	CATG	1 cut(s)	168
HphI	GGTGA	2 cut(s)	310, 377
Hpy188I	TCNGA	2 cut(s)	192, 283
Hpy188III	TCNNGA	1 cut(s)	422
HpyAV	CCTTC	1 cut(s)	286
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	5 cut(s)	65, 94, 164, 208, 230
HpyF10VI	GCNNNNNNNGC	3 cut(s)	146, 161, 236
HpyF3I	CTNAG	1 cut(s)	41
HpySE526I	ACGT	1 cut(s)	315
Hsp92I	GRCGYC	1 cut(s)	315
Hsp92II	CATG	1 cut(s)	168
Kzo9I	GATC	1 cut(s)	79
LmnI	GCTCC	1 cut(s)	279
LpnPI	CCDG	4 cut(s)	219, 283, 341, 435
Lsp1109I	GCAGC	2 cut(s)	238, 242
LweI	GCATC	2 cut(s)	103, 358
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MluCI	AATT	7 cut(s)	36, 85, 128, 169, 209, 257, 355
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	8 cut(s)	4, 45, 109, 257, 272, 328, 357, 441
MroXI	GAANNNNTTC	1 cut(s)	36
MseI	TTAA	4 cut(s)	84, 132, 213, 354
MspA1I	CMGCKG	1 cut(s)	233
MwoI	GCNNNNNNNGC	3 cut(s)	146, 161, 236
NdeII	GATC	1 cut(s)	79
NlaIII	CATG	1 cut(s)	168
NlaIV	GGNNCC	1 cut(s)	238
NmuCI	GTSAC	1 cut(s)	316
PdmI	GAANNNNTTC	1 cut(s)	36
PkrI	GCNGC	2 cut(s)	232, 253
PsiI	TTATAA	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	238
PvuII	CAGCTG	1 cut(s)	233
SaqAI	TTAA	4 cut(s)	84, 132, 213, 354
SatI	GCNGC	2 cut(s)	231, 252
Sau3AI	GATC	1 cut(s)	79
SetI	ASST	7 cut(s)	15, 142, 235, 276, 297, 318, 367
SfaNI	GCATC	2 cut(s)	103, 358
SfcI	CTRYAG	1 cut(s)	372
SmlI	CTYRAG	1 cut(s)	156
SmoI	CTYRAG	1 cut(s)	156
Sse9I	AATT	7 cut(s)	36, 85, 128, 169, 209, 257, 355
TaaI	ACNGT	1 cut(s)	388
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	1 cut(s)	9
TasI	AATT	7 cut(s)	36, 85, 128, 169, 209, 257, 355
Tru1I	TTAA	4 cut(s)	84, 132, 213, 354
Tru9I	TTAA	4 cut(s)	84, 132, 213, 354
TscAI	CASTG	1 cut(s)	393
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	2 cut(s)	230, 251
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	1 cut(s)	33
TspGWI	ACGGA	1 cut(s)	382
TspRI	CASTG	1 cut(s)	393
XagI	CCTNNNNNAGG	1 cut(s)	113
XapI	RAATTY	3 cut(s)	128, 169, 257
XcmI	CCANNNNNNNNNTGG	2 cut(s)	230, 335
XmnI	GAANNNNTTC	1 cut(s)	36
ZraI	GACGTC	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.