Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001562

Physical Location & Seq

Genomic Coordinates Reverse (-)

23306293 .. 23307150

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g20520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGCCAGCGCCTGAGCAGTCAGTTGTTGGAAATGATGACGGATCTCCTAGAACTACAAAATGTCGAAATAATGACTCCAGAAGTACTGAAACAAAATATGATCTGGACCAGAGTGTTGATTTAGAATCCAAAGATAATCAACACGCTGCACCGTTGTCATCCAGCCAGGAGAAGATTAGAGATGCTCAAATCGTATCAGAATTTCAGTCAGAGGGACGTGATGAAGAAGGTCAAGAAGATAATAGGAAACTTGATACAATAGAAACCCAGAAATTGAAGGACAAACAATTAGGTCAGAGCCTGGAAAATGGGCAAGGTTCACTTGGCCAGTCACCTCAAAATGTTATAAAGAAGATTGACAAAAACAAGGTGAAGGCAGCATTGGAAAAACGGCGGAAGAGCCAAGGGGATATGGATCGAAAAAAGGACTTGATGGATGAGGATGATCTGATTGAGAGGGAACTGGAAGATGGTATTGAACTGGGTTCTGGGAGTGAGAAAATCAAGGGAGATGGGAGTCAAAGCTTACCTAAGTCCTCAACTACACCAGAAAATGTGGACCTGCATCCAGGAAAACATCAAGAGGGTGTCTGGGATGATGGAACTGATCTAAATAATGTAGAAGGTGAGGTATCTGCACTCGCTGATGGTGGCCAAGGATCACCCATTTTAAGTGACCGCAAGAGAAAAGCAGTAACCCCTCCACTTGATGATGTAGAGAAGAAGCAGCGGCATGATTATGAACCTGGAACCCCGAACCATAATCAGTTTGATCATAAAGAAGATCACAGCAGGGCGGGCCTGGTCGGACACACTGATATGGATCACATAAGGCCAGTGCAGGAAAATGCTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

286

Amino Acids

31.57

Weight (kDa)

4.92

Isoelectric Point (pI)

57.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19600 AT5G45190 AT5G45190 AT5G45190
fragaria_vesca	FvH4_3g15520 FvH4_3g15520 FvH4_3g15520 FvH4_3g15521 FvH4_3g15521
malus_domestica	MD05G1222500.v1.1 MD05G1222600.v1.1 MD10G1204100.v1.1 MD10G1204200.v1.1
prunus_persica	Prupe.4G137700_v2.0.a1 Prupe.4G137800_v2.0.a1
pyrus_communis	pycom05g20520 pycom10g17480 pycom10g17490
rosa_chinensis	RchiOBHm_Chr5g0026141 RchiOBHm_Chr5g0026151
rosa_laevigata	RLG00000032906 RLG00000032907
rosa_multiflora	Rmu_co8230253.1_g000001 Rmu_co8464075.1_g000001 Rmu_sc0002806.1_g000001 Rmu_sc0002909.1_g000016 Rmu_sc0009679.1_g000001 Rmu_sc0009679.1_g000002 Rmu_sc0029141.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053050 Rroxscaffold_1G00053160 Rroxscaffold_1G00053170
rosa_rugosa	Rorug05G0091000.1
rosa_samantha	Rh2CG288400 Rh5AG183800 Rh5AG183900 Rh5AG184000 Rh5BG180600 Rh5BG180700 Rh5BG180800 Rh5CG199600 Rh5CG199700 Rh5CG199800 Rh5CG201400 Rh5DG182200 Rh5DG182300 Rh5DG182400
rosa_wichuraiana	Rw5G016640 Rw5G016650 Rw5G016810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	347
Acc36I	ACCTGC	1 cut(s)	570
AciI	CCGC	4 cut(s)	394, 679, 730, 797
AclWI	GGATC	4 cut(s)	49, 423, 667, 831
AcoI	YGGCCR	2 cut(s)	325, 652
AcsI	RAATTY	1 cut(s)	200
AfaI	GTAC	1 cut(s)	85
AgsI	TTSAA	2 cut(s)	277, 479
AjiI	CACGTC	1 cut(s)	218
AjnI	CCWGG	5 cut(s)	165, 300, 568, 745, 801
AjuI	GAANNNNNNNTTGG	2 cut(s)	365, 397
AluBI	AGCT	1 cut(s)	525
AluI	AGCT	1 cut(s)	525
AlwI	GGATC	4 cut(s)	49, 423, 667, 831
AlwNI	CAGNNNCTG	2 cut(s)	11, 301
AoxI	GGCC	4 cut(s)	325, 652, 799, 833
ApeKI	GCWGC	3 cut(s)	146, 377, 727
ApoI	RAATTY	1 cut(s)	200
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	3 cut(s)	106, 559, 799
AsuHPI	GGTGA	4 cut(s)	324, 382, 638, 654
AvaII	GGWCC	2 cut(s)	106, 559
BalI	TGGCCA	2 cut(s)	327, 654
BbvI	GCAGC	3 cut(s)	133, 389, 739
BccI	CCATC	5 cut(s)	427, 464, 506, 593, 641
BceAI	ACGGC	1 cut(s)	407
BciT130I	CCWGG	5 cut(s)	167, 302, 570, 747, 803
BclI	TGATCA	1 cut(s)	772
BfaI	CTAG	1 cut(s)	48
BfoI	RGCGCY	1 cut(s)	11
BfuAI	ACCTGC	1 cut(s)	570
BisI	GCNGC	4 cut(s)	147, 378, 728, 731
BlsI	GCNGC	4 cut(s)	148, 379, 729, 732
BmcAI	AGTACT	1 cut(s)	85
Bme1390I	CCNGG	5 cut(s)	167, 302, 570, 747, 803
Bme18I	GGWCC	2 cut(s)	106, 559
BmgBI	CACGTC	1 cut(s)	218
BmgT120I	GGNCC	3 cut(s)	106, 559, 799
BmiI	GGNNCC	1 cut(s)	751
BmrFI	CCNGG	5 cut(s)	167, 302, 570, 747, 803
BmrI	ACTGGG	1 cut(s)	491
BmsI	GCATC	2 cut(s)	172, 574
BmuI	ACTGGG	1 cut(s)	491
BpmI	CTGGAG	1 cut(s)	61
Bpu10I	CCTNAGC	1 cut(s)	12
BsaBI	GATNNNNATC	2 cut(s)	414, 822
BsaJI	CCNNGG	2 cut(s)	403, 655
Bse1I	ACTGG	4 cut(s)	328, 468, 486, 836
Bse8I	GATNNNNATC	2 cut(s)	414, 822
BseBI	CCWGG	5 cut(s)	167, 302, 570, 747, 803
BseDI	CCNNGG	2 cut(s)	403, 655
BseGI	GGATG	5 cut(s)	158, 442, 448, 565, 601
BseJI	GATNNNNATC	2 cut(s)	414, 822
BseNI	ACTGG	4 cut(s)	328, 468, 486, 836
BseXI	GCAGC	3 cut(s)	133, 389, 739
BsgI	GTGCAG	2 cut(s)	132, 621
BshFI	GGCC	4 cut(s)	327, 654, 801, 835
BslFI	GGGAC	1 cut(s)	228
BsmFI	GGGAC	1 cut(s)	228
BsnI	GGCC	4 cut(s)	327, 654, 801, 835
Bsp143I	GATC	9 cut(s)	41, 100, 415, 445, 607, 659, 772, 784, 823
BspACI	CCGC	4 cut(s)	394, 679, 730, 797
BspANI	GGCC	4 cut(s)	327, 654, 801, 835
BspCNI	CTCAG	1 cut(s)	4
BspLI	GGNNCC	1 cut(s)	751
BspMI	ACCTGC	1 cut(s)	570
BspPI	GGATC	4 cut(s)	49, 423, 667, 831
BspQI	GCTCTTC	1 cut(s)	392
BsrI	ACTGG	4 cut(s)	328, 468, 486, 836
BssECI	CCNNGG	2 cut(s)	403, 655
BssMI	GATC	9 cut(s)	41, 100, 415, 445, 607, 659, 772, 784, 823
BssT1I	CCWWGG	2 cut(s)	403, 655
Bst2UI	CCWGG	5 cut(s)	167, 302, 570, 747, 803
Bst4CI	ACNGT	1 cut(s)	153
Bst6I	CTCTTC	1 cut(s)	392
BstC8I	GCNNGC	2 cut(s)	6, 799
BstDEI	CTNAG	2 cut(s)	12, 531
BstF5I	GGATG	5 cut(s)	158, 442, 448, 565, 601
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	9 cut(s)	44, 103, 418, 448, 610, 662, 775, 787, 826
BstMBI	GATC	9 cut(s)	41, 100, 415, 445, 607, 659, 772, 784, 823
BstMWI	GCNNNNNNNGC	1 cut(s)	798
BstNI	CCWGG	5 cut(s)	167, 302, 570, 747, 803
BstSCI	CCNGG	5 cut(s)	165, 300, 568, 745, 801
BstV1I	GCAGC	3 cut(s)	133, 389, 739
BstX2I	RGATCY	1 cut(s)	41
BstYI	RGATCY	1 cut(s)	41
BsuRI	GGCC	4 cut(s)	327, 654, 801, 835
BtrI	CACGTC	1 cut(s)	218
BtsCI	GGATG	5 cut(s)	158, 442, 448, 565, 601
BtsIMutI	CAGTG	2 cut(s)	813, 843
BveI	ACCTGC	1 cut(s)	570
Cac8I	GCNNGC	2 cut(s)	6, 799
CaiI	CAGNNNCTG	2 cut(s)	11, 301
CfoI	GCGC	1 cut(s)	10
Cfr13I	GGNCC	3 cut(s)	106, 559, 799
Csp6I	GTAC	1 cut(s)	84
CviAII	CATG	1 cut(s)	734
CviJI	RGCY	8 cut(s)	165, 300, 327, 402, 525, 654, 801, 835
CviKI_1	RGCY	8 cut(s)	165, 300, 327, 402, 525, 654, 801, 835
CviQI	GTAC	1 cut(s)	84
DdeI	CTNAG	2 cut(s)	12, 531
DpnI	GATC	9 cut(s)	43, 102, 417, 447, 609, 661, 774, 786, 825
DpnII	GATC	9 cut(s)	41, 100, 415, 445, 607, 659, 772, 784, 823
EaeI	YGGCCR	2 cut(s)	325, 652
Eam1104I	CTCTTC	1 cut(s)	392
EarI	CTCTTC	1 cut(s)	392
EciI	GGCGGA	1 cut(s)	409
Eco130I	CCWWGG	2 cut(s)	403, 655
Eco47I	GGWCC	2 cut(s)	106, 559
EcoRII	CCWGG	5 cut(s)	165, 300, 568, 745, 801
EcoT14I	CCWWGG	2 cut(s)	403, 655
ErhI	CCWWGG	2 cut(s)	403, 655
FaeI	CATG	1 cut(s)	737
FaiI	YATR	9 cut(s)	99, 347, 413, 735, 741, 762, 777, 821, 830
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FaqI	GGGAC	1 cut(s)	228
FatI	CATG	1 cut(s)	733
FauI	CCCGC	1 cut(s)	790
FbaI	TGATCA	1 cut(s)	772
Fnu4HI	GCNGC	4 cut(s)	147, 378, 728, 731
FokI	GGATG	5 cut(s)	145, 449, 455, 552, 608
Fsp4HI	GCNGC	4 cut(s)	147, 378, 728, 731
FspBI	CTAG	1 cut(s)	48
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	4 cut(s)	147, 378, 728, 731
GsuI	CTGGAG	1 cut(s)	61
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	4 cut(s)	327, 654, 801, 835
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	1 cut(s)	737
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HindIII	AAGCTT	1 cut(s)	523
HinfI	GANTC	3 cut(s)	74, 125, 517
HphI	GGTGA	4 cut(s)	324, 382, 638, 654
Hpy166II	GTNNAC	2 cut(s)	320, 559
Hpy188I	TCNGA	6 cut(s)	199, 211, 297, 450, 809, 857
Hpy188III	TCNNGA	4 cut(s)	78, 104, 233, 581
Hpy8I	GTNNAC	2 cut(s)	320, 559
HpyAV	CCTTC	4 cut(s)	221, 271, 367, 617
HpyCH4III	ACNGT	1 cut(s)	153
HpyCH4IV	ACGT	1 cut(s)	217
HpyCH4V	TGCA	4 cut(s)	149, 565, 638, 841
HpyF10VI	GCNNNNNNNGC	1 cut(s)	798
HpyF3I	CTNAG	2 cut(s)	12, 531
HpySE526I	ACGT	1 cut(s)	217
Hsp92II	CATG	1 cut(s)	737
HspAI	GCGC	1 cut(s)	8
Ksp22I	TGATCA	1 cut(s)	772
Kzo9I	GATC	9 cut(s)	41, 100, 415, 445, 607, 659, 772, 784, 823
LguI	GCTCTTC	1 cut(s)	392
Lsp1109I	GCAGC	3 cut(s)	133, 389, 739
LweI	GCATC	2 cut(s)	172, 574
MaeI	CTAG	1 cut(s)	48
MaeII	ACGT	1 cut(s)	217
MaeIII	GTNAC	3 cut(s)	330, 674, 694
MalI	GATC	9 cut(s)	43, 102, 417, 447, 609, 661, 774, 786, 825
MboI	GATC	9 cut(s)	41, 100, 415, 445, 607, 659, 772, 784, 823
MboII	GAAGA	8 cut(s)	184, 236, 248, 364, 409, 479, 733, 794
MflI	RGATCY	1 cut(s)	41
MlsI	TGGCCA	2 cut(s)	327, 654
MluCI	AATT	3 cut(s)	200, 272, 287
MluNI	TGGCCA	2 cut(s)	327, 654
MlyI	GAGTC	2 cut(s)	68, 526
MmeI	TCCRAC	2 cut(s)	7, 787
MnlI	CCTC	8 cut(s)	205, 345, 433, 450, 547, 577, 622, 711
Mox20I	TGGCCA	2 cut(s)	327, 654
MscI	TGGCCA	2 cut(s)	327, 654
MseI	TTAA	1 cut(s)	671
MslI	CAYNNNNRTG	2 cut(s)	738, 818
Msp20I	TGGCCA	2 cut(s)	327, 654
MspA1I	CMGCKG	1 cut(s)	730
MspR9I	CCNGG	5 cut(s)	167, 302, 570, 747, 803
MvaI	CCWGG	5 cut(s)	167, 302, 570, 747, 803
MwoI	GCNNNNNNNGC	1 cut(s)	798
NdeII	GATC	9 cut(s)	41, 100, 415, 445, 607, 659, 772, 784, 823
NlaIII	CATG	1 cut(s)	737
NlaIV	GGNNCC	1 cut(s)	751
NmuCI	GTSAC	2 cut(s)	330, 674
PciSI	GCTCTTC	1 cut(s)	392
PfeI	GAWTC	1 cut(s)	125
PfoI	TCCNGGA	1 cut(s)	568
PkrI	GCNGC	4 cut(s)	148, 379, 729, 732
PleI	GAGTC	2 cut(s)	68, 525
PpsI	GAGTC	2 cut(s)	68, 525
PsiI	TTATAA	1 cut(s)	347
Psp6I	CCWGG	5 cut(s)	165, 300, 568, 745, 801
PspGI	CCWGG	5 cut(s)	165, 300, 568, 745, 801
PspN4I	GGNNCC	1 cut(s)	751
PspPI	GGNCC	3 cut(s)	106, 559, 799
PstNI	CAGNNNCTG	2 cut(s)	11, 301
PsuI	RGATCY	1 cut(s)	41
RsaI	GTAC	1 cut(s)	85
RsaNI	GTAC	1 cut(s)	84
RseI	CAYNNNNRTG	2 cut(s)	738, 818
SapI	GCTCTTC	1 cut(s)	392
SaqAI	TTAA	1 cut(s)	671
SatI	GCNGC	4 cut(s)	147, 378, 728, 731
Sau3AI	GATC	9 cut(s)	41, 100, 415, 445, 607, 659, 772, 784, 823
Sau96I	GGNCC	3 cut(s)	106, 559, 799
ScaI	AGTACT	1 cut(s)	85
SchI	GAGTC	2 cut(s)	68, 526
ScrFI	CCNGG	5 cut(s)	167, 302, 570, 747, 803
SfaNI	GCATC	2 cut(s)	172, 574
SinI	GGWCC	2 cut(s)	106, 559
SmiMI	CAYNNNNRTG	2 cut(s)	738, 818
Sse9I	AATT	3 cut(s)	200, 272, 287
SsiI	CCGC	4 cut(s)	394, 679, 730, 797
SspMI	CTAG	1 cut(s)	48
StyD4I	CCNGG	5 cut(s)	165, 300, 568, 745, 801
StyI	CCWWGG	2 cut(s)	403, 655
TaaI	ACNGT	1 cut(s)	153
TaiI	ACGT	1 cut(s)	220
TaqI	TCGA	2 cut(s)	64, 418
TasI	AATT	3 cut(s)	200, 272, 287
TatI	WGTACW	1 cut(s)	83
TauI	GCSGC	1 cut(s)	733
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	1 cut(s)	671
Tru9I	TTAA	1 cut(s)	671
TscAI	CASTG	2 cut(s)	820, 843
TseFI	GTSAC	2 cut(s)	330, 674
TseI	GCWGC	3 cut(s)	146, 377, 727
Tsp45I	GTSAC	2 cut(s)	330, 674
TspDTI	ATGAA	2 cut(s)	237, 756
TspGWI	ACGGA	1 cut(s)	54
TspRI	CASTG	2 cut(s)	820, 843
VpaK11BI	GGWCC	2 cut(s)	106, 559
XapI	RAATTY	1 cut(s)	200
XspI	CTAG	1 cut(s)	48
ZrmI	AGTACT	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.