Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001562

Physical Location & Seq

Genomic Coordinates Forward (+)

20052453 .. 20061424

Gene Structure 8972 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG199600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGAACTTGAGCTTTGAGGGTCTGGAGAGATTATGGTCCAGCAGGATCAAAAGCCCCAAGACCAAGGTCTTTTGCATGCTCATCAAAGGCCTATCTACAACAGTGAAATATCCTTGCACAAATTTGCTGCCCTCTCCTATTCGTCAATTCCAGGAAGCTACGGGACTGTTCCAATCTACAACATTCAACTTTATAAATTTTGTACATCCAGTTTGTTGTAAATTTGTGAGCAGAGATATACATATGGCTGGTTTTTTGCCTGCTGAGTCCTCTCATAGTGGAATCACTGGTATGTATGATGGTGGGTCCTCTAACGCTCAGGAGAGGCTGGAGGAAGGATCCTGTTGGTACTTTTACAGAAAGGAAATTGAAGAAAATTCTCCATCTAGACTAGATGGCATTGACTTGAAGAAGGAGACATATCTACGCAAGTCATACTGTACTTTTCTACAAGATTTGGGCATGAGACTTAAAGTACCCCAGGTAACAATTGCAACAGCCATAATTTTCTGTCACCGATTTTTTCTTCGACAATCACATGCAAGAAATGATAGAAGGACTATTGCAACAGTTTGTATGTTTCTTGCTGGCAAGGTTGAAGAAACTCCACGGCCACTGAAAGATGTTATCATCGTTTCTTATGAAATTATACATAAGAAGGATCCTGCAGCAGTTCAGAAGATCAAGCAAAAGGAGGTATATGAACAGCAGAAAGAACTAATTCTTAGTGGAGAGAGGGTTGTTCTTGCAACTCTTGGTTTTGATCTTAATTTACTGCATCCTTATAAACCCCTTGTTGAGGCGATAAAGAAATTTAAAGTAGCTCAAAATGCCCTTGCTCAAGTTGCATGGAATTTCGTCAATGATGGACTTCGGACATCTCTTTGCTTGCAATTTAAACCCCACCACATTGCAGCTGGTGCCATTTTCCTGGCTGCCAAATTCCTCAAAGTAAAGCTCCCGTCAGATGGCGAGAAGGTCTGGTGGCAAGAGTTTGACGTCACCCCACGCCAGTTGGAGGGTGGGTGTCCTCATTTTAATTCAGTAGGTGATGCTACAGAGCAATCAACAGTGTCCGTTTCCCACCCTTGTTCTCCATCAGTCCAGATTTTCCTCCATTATTTTTTCTGCCCCTCTAATTCCTTTTCTTACTCAGATAAGTATAGCAGGTCTAAGGAAAACTTAAAAGTTCAAACTTTAGAACGAGTTAGGAATAAAATGAAAATGGTTTGGCCAATTACATTAGTGTTGCTGGGAAGAATTAATAGTAATTGGATCATCTGTAACTCATTGTTAAATAGTTTTGTGAATATATGGCCTTGTCAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

443

Amino Acids

50.6

Weight (kDa)

9.21

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	118 - 257	2.1e-17	Cyclin, N-terminal domain
CycT2-like_C	PF21797	260 - 333	1.7e-06	Cyclin-T2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19600 AT5G45190 AT5G45190 AT5G45190
fragaria_vesca	FvH4_3g15520 FvH4_3g15520 FvH4_3g15520 FvH4_3g15521 FvH4_3g15521
malus_domestica	MD05G1222500.v1.1 MD05G1222600.v1.1 MD10G1204100.v1.1 MD10G1204200.v1.1
prunus_persica	Prupe.4G137700_v2.0.a1 Prupe.4G137800_v2.0.a1
pyrus_communis	pycom05g20520 pycom10g17480 pycom10g17490
rosa_chinensis	RchiOBHm_Chr5g0026141 RchiOBHm_Chr5g0026151
rosa_laevigata	RLG00000032906 RLG00000032907
rosa_multiflora	Rmu_co8230253.1_g000001 Rmu_co8464075.1_g000001 Rmu_sc0002806.1_g000001 Rmu_sc0002909.1_g000016 Rmu_sc0009679.1_g000001 Rmu_sc0009679.1_g000002 Rmu_sc0029141.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053050 Rroxscaffold_1G00053160 Rroxscaffold_1G00053170
rosa_rugosa	Rorug05G0091000.1
rosa_samantha	Rh2CG288400 Rh5AG183800 Rh5AG183900 Rh5AG184000 Rh5BG180600 Rh5BG180700 Rh5BG180800 Rh5CG199600 Rh5CG199700 Rh5CG199800 Rh5CG201400 Rh5DG182200 Rh5DG182300 Rh5DG182400
rosa_wichuraiana	Rw5G016640 Rw5G016650 Rw5G016810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	194, 786
AatII	GACGTC	1 cut(s)	1002
Acc36I	ACCTGC	1 cut(s)	1158
AccB1I	GGYRCC	1 cut(s)	920
AclWI	GGATC	6 cut(s)	53, 333, 346, 656, 669, 1283
AcoI	YGGCCR	2 cut(s)	611, 1232
AcsI	RAATTY	7 cut(s)	121, 196, 221, 376, 812, 853, 941
AcyI	GRCGYC	1 cut(s)	999
AfaI	GTAC	4 cut(s)	204, 350, 442, 477
AfiI	CCNNNNNNNGG	3 cut(s)	799, 968, 1018
AgsI	TTSAA	5 cut(s)	187, 371, 409, 599, 1193
AjnI	CCWGG	3 cut(s)	150, 480, 930
AluBI	AGCT	6 cut(s)	12, 158, 824, 917, 958, 1327
AluI	AGCT	6 cut(s)	12, 158, 824, 917, 958, 1327
Alw26I	GTCTC	2 cut(s)	410, 460
AlwI	GGATC	6 cut(s)	53, 333, 346, 656, 669, 1283
AoxI	GGCC	4 cut(s)	88, 611, 1232, 1316
ApeKI	GCWGC	4 cut(s)	127, 668, 914, 935
ApoI	RAATTY	7 cut(s)	121, 196, 221, 376, 812, 853, 941
AseI	ATTAAT	1 cut(s)	1263
Asp700I	GAANNNNTTC	1 cut(s)	720
AspS9I	GGNCC	2 cut(s)	36, 306
AsuHPI	GGTGA	3 cut(s)	506, 994, 1061
AvaII	GGWCC	2 cut(s)	36, 306
BalI	TGGCCA	1 cut(s)	1234
BamHI	GGATCC	2 cut(s)	338, 661
BanI	GGYRCC	1 cut(s)	920
BbvI	GCAGC	4 cut(s)	114, 680, 922, 926
BccI	CCATC	6 cut(s)	293, 389, 391, 860, 962, 1105
BceAI	ACGGC	1 cut(s)	626
BciT130I	CCWGG	3 cut(s)	152, 482, 932
BcoDI	GTCTC	2 cut(s)	410, 460
BfaI	CTAG	2 cut(s)	387, 392
BfmI	CTRYAG	2 cut(s)	666, 1056
BfuAI	ACCTGC	1 cut(s)	1158
BisI	GCNGC	4 cut(s)	128, 669, 915, 936
BlsI	GCNGC	4 cut(s)	129, 670, 916, 937
Bme1390I	CCNGG	3 cut(s)	152, 482, 932
Bme18I	GGWCC	2 cut(s)	36, 306
BmgT120I	GGNCC	2 cut(s)	36, 306
BmiI	GGNNCC	4 cut(s)	307, 340, 663, 922
BmrFI	CCNGG	3 cut(s)	152, 482, 932
BmsI	GCATC	2 cut(s)	787, 1042
BoxI	GACNNNNGTC	1 cut(s)	65
BpmI	CTGGAG	2 cut(s)	44, 350
Bpu10I	CCTNAGC	1 cut(s)	318
BpuEI	CTTGAG	2 cut(s)	28, 825
BsaHI	GRCGYC	1 cut(s)	999
BsaJI	CCNNGG	3 cut(s)	63, 480, 608
BsaXI	ACNNNNNCTCC	4 cut(s)	723, 753, 1010, 1040
Bsc4I	CCNNNNNNNGG	3 cut(s)	799, 968, 1018
Bse1I	ACTGG	3 cut(s)	209, 292, 1012
Bse3DI	GCAATG	1 cut(s)	909
BseBI	CCWGG	3 cut(s)	152, 482, 932
BseDI	CCNNGG	3 cut(s)	63, 480, 608
BseGI	GGATG	2 cut(s)	205, 778
BseLI	CCNNNNNNNGG	3 cut(s)	799, 968, 1018
BseMI	GCAATG	1 cut(s)	909
BseMII	CTCAG	3 cut(s)	255, 332, 1167
BseNI	ACTGG	3 cut(s)	209, 292, 1012
BseXI	GCAGC	4 cut(s)	114, 680, 922, 926
BseYI	CCCAGC	1 cut(s)	1252
BshFI	GGCC	4 cut(s)	90, 613, 1234, 1318
BshNI	GGYRCC	1 cut(s)	920
BslFI	GGGAC	1 cut(s)	177
BslI	CCNNNNNNNGG	3 cut(s)	799, 968, 1018
BsmAI	GTCTC	2 cut(s)	410, 460
BsmFI	GGGAC	1 cut(s)	177
BsnI	GGCC	4 cut(s)	90, 613, 1234, 1318
Bsp1407I	TGTACA	1 cut(s)	202
Bsp143I	GATC	6 cut(s)	45, 338, 661, 681, 763, 1275
BspANI	GGCC	4 cut(s)	90, 613, 1234, 1318
BspCNI	CTCAG	3 cut(s)	256, 331, 1166
BspLI	GGNNCC	4 cut(s)	307, 340, 663, 922
BspMAI	CTGCAG	1 cut(s)	670
BspMI	ACCTGC	1 cut(s)	1158
BspPI	GGATC	6 cut(s)	53, 333, 346, 656, 669, 1283
BspT107I	GGYRCC	1 cut(s)	920
BsrDI	GCAATG	1 cut(s)	909
BsrGI	TGTACA	1 cut(s)	202
BsrI	ACTGG	3 cut(s)	209, 292, 1012
BssECI	CCNNGG	3 cut(s)	63, 480, 608
BssMI	GATC	6 cut(s)	45, 338, 661, 681, 763, 1275
BssNI	GRCGYC	1 cut(s)	999
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	3 cut(s)	152, 482, 932
Bst4CI	ACNGT	5 cut(s)	103, 168, 440, 571, 1072
BstACI	GRCGYC	1 cut(s)	999
BstAPI	GCANNNNNTGC	1 cut(s)	920
BstAUI	TGTACA	1 cut(s)	202
BstC8I	GCNNGC	4 cut(s)	77, 261, 589, 890
BstDEI	CTNAG	5 cut(s)	264, 318, 725, 1153, 1173
BstDSI	CCRYGG	1 cut(s)	608
BstENI	CCTNNNNNAGG	1 cut(s)	797
BstF5I	GGATG	2 cut(s)	205, 778
BstKTI	GATC	6 cut(s)	48, 341, 664, 684, 766, 1278
BstMAI	GTCTC	2 cut(s)	410, 460
BstMBI	GATC	6 cut(s)	45, 338, 661, 681, 763, 1275
BstMWI	GCNNNNNNNGC	4 cut(s)	830, 845, 920, 1324
BstNI	CCWGG	3 cut(s)	152, 482, 932
BstNSI	RCATGY	2 cut(s)	79, 542
BstPAI	GACNNNNGTC	1 cut(s)	65
BstSCI	CCNGG	3 cut(s)	150, 480, 930
BstSFI	CTRYAG	2 cut(s)	666, 1056
BstV1I	GCAGC	4 cut(s)	114, 680, 922, 926
BstX2I	RGATCY	2 cut(s)	338, 661
BstXI	CCANNNNNNTGG	1 cut(s)	931
BstYI	RGATCY	2 cut(s)	338, 661
BsuRI	GGCC	4 cut(s)	90, 613, 1234, 1318
BtgI	CCRYGG	1 cut(s)	608
BtsCI	GGATG	2 cut(s)	205, 778
BtsIMutI	CAGTG	4 cut(s)	108, 285, 614, 1077
BveI	ACCTGC	1 cut(s)	1158
Cac8I	GCNNGC	4 cut(s)	77, 261, 589, 890
Cfr13I	GGNCC	2 cut(s)	36, 306
Csp6I	GTAC	4 cut(s)	203, 349, 441, 476
CspCI	CAANNNNNGTGG	2 cut(s)	996, 1031
CviAII	CATG	4 cut(s)	76, 463, 539, 849
CviQI	GTAC	4 cut(s)	203, 349, 441, 476
DdeI	CTNAG	5 cut(s)	264, 318, 725, 1153, 1173
DpnI	GATC	6 cut(s)	47, 340, 663, 683, 765, 1277
DpnII	GATC	6 cut(s)	45, 338, 661, 681, 763, 1275
DraI	TTTAAA	2 cut(s)	817, 898
EaeI	YGGCCR	2 cut(s)	611, 1232
Eco130I	CCWWGG	1 cut(s)	63
Eco147I	AGGCCT	1 cut(s)	90
Eco47I	GGWCC	2 cut(s)	36, 306
EcoNI	CCTNNNNNAGG	1 cut(s)	797
EcoO109I	RGGNCCY	1 cut(s)	306
EcoRII	CCWGG	3 cut(s)	150, 480, 930
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	4 cut(s)	79, 466, 542, 852
FalI	AAGNNNNNCTT	2 cut(s)	1166, 1198
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	4 cut(s)	75, 462, 538, 848
FauNDI	CATATG	1 cut(s)	243
Fnu4HI	GCNGC	4 cut(s)	128, 669, 915, 936
FokI	GGATG	2 cut(s)	192, 765
Fsp4HI	GCNGC	4 cut(s)	128, 669, 915, 936
FspBI	CTAG	2 cut(s)	387, 392
GluI	GCNGC	4 cut(s)	128, 669, 915, 936
GsaI	CCCAGC	1 cut(s)	1256
GsuI	CTGGAG	2 cut(s)	44, 350
HaeIII	GGCC	4 cut(s)	90, 613, 1234, 1318
Hin1I	GRCGYC	1 cut(s)	999
Hin1II	CATG	4 cut(s)	79, 466, 542, 852
HinfI	GANTC	2 cut(s)	266, 282
HphI	GGTGA	3 cut(s)	506, 994, 1061
Hpy188I	TCNGA	4 cut(s)	678, 876, 967, 1156
Hpy188III	TCNNGA	4 cut(s)	23, 320, 387, 1105
HpyAV	CCTTC	5 cut(s)	329, 406, 549, 652, 970
HpyCH4III	ACNGT	5 cut(s)	103, 168, 440, 571, 1072
HpyCH4IV	ACGT	1 cut(s)	999
HpyF10VI	GCNNNNNNNGC	4 cut(s)	830, 845, 920, 1324
HpyF3I	CTNAG	5 cut(s)	264, 318, 725, 1153, 1173
HpySE526I	ACGT	1 cut(s)	999
Hsp92I	GRCGYC	1 cut(s)	999
Hsp92II	CATG	4 cut(s)	79, 466, 542, 852
Kzo9I	GATC	6 cut(s)	45, 338, 661, 681, 763, 1275
LmnI	GCTCC	1 cut(s)	963
Lsp1109I	GCAGC	4 cut(s)	114, 680, 922, 926
LweI	GCATC	2 cut(s)	787, 1042
MaeI	CTAG	2 cut(s)	387, 392
MaeII	ACGT	1 cut(s)	999
MaeIII	GTNAC	4 cut(s)	484, 512, 1000, 1283
MalI	GATC	6 cut(s)	47, 340, 663, 683, 765, 1277
MboI	GATC	6 cut(s)	45, 338, 661, 681, 763, 1275
MboII	GAAGA	6 cut(s)	383, 421, 518, 611, 691, 1269
MfeI	CAATTG	1 cut(s)	489
MflI	RGATCY	2 cut(s)	338, 661
MlsI	TGGCCA	1 cut(s)	1234
MluNI	TGGCCA	1 cut(s)	1234
MlyI	GAGTC	1 cut(s)	275
MmeI	TCCRAC	1 cut(s)	996
Mox20I	TGGCCA	1 cut(s)	1234
MroXI	GAANNNNTTC	1 cut(s)	720
MscI	TGGCCA	1 cut(s)	1234
MseI	TTAA	9 cut(s)	471, 768, 816, 897, 1038, 1184, 1263, 1295, 1330
MslI	CAYNNNNRTG	1 cut(s)	290
Msp20I	TGGCCA	1 cut(s)	1234
MspA1I	CMGCKG	1 cut(s)	917
MspR9I	CCNGG	3 cut(s)	152, 482, 932
MunI	CAATTG	1 cut(s)	489
MvaI	CCWGG	3 cut(s)	152, 482, 932
MwoI	GCNNNNNNNGC	4 cut(s)	830, 845, 920, 1324
NdeI	CATATG	1 cut(s)	243
NdeII	GATC	6 cut(s)	45, 338, 661, 681, 763, 1275
NlaIII	CATG	4 cut(s)	79, 466, 542, 852
NlaIV	GGNNCC	4 cut(s)	307, 340, 663, 922
NmuCI	GTSAC	2 cut(s)	512, 1000
NspI	RCATGY	2 cut(s)	79, 542
PaeI	GCATGC	1 cut(s)	79
PceI	AGGCCT	1 cut(s)	90
PdmI	GAANNNNTTC	1 cut(s)	720
PfeI	GAWTC	1 cut(s)	282
PfoI	TCCNGGA	1 cut(s)	150
PkrI	GCNGC	4 cut(s)	129, 670, 916, 937
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
PpuMI	RGGWCCY	1 cut(s)	306
PshAI	GACNNNNGTC	1 cut(s)	65
PshBI	ATTAAT	1 cut(s)	1263
PsiI	TTATAA	2 cut(s)	194, 786
Psp5II	RGGWCCY	1 cut(s)	306
Psp6I	CCWGG	3 cut(s)	150, 480, 930
PspFI	CCCAGC	1 cut(s)	1252
PspGI	CCWGG	3 cut(s)	150, 480, 930
PspN4I	GGNNCC	4 cut(s)	307, 340, 663, 922
PspPI	GGNCC	2 cut(s)	36, 306
PspPPI	RGGWCCY	1 cut(s)	306
PstI	CTGCAG	1 cut(s)	670
PsuI	RGATCY	2 cut(s)	338, 661
PvuII	CAGCTG	1 cut(s)	917
RsaI	GTAC	4 cut(s)	204, 350, 442, 477
RsaNI	GTAC	4 cut(s)	203, 349, 441, 476
RseI	CAYNNNNRTG	1 cut(s)	290
SaqAI	TTAA	9 cut(s)	471, 768, 816, 897, 1038, 1184, 1263, 1295, 1330
SatI	GCNGC	4 cut(s)	128, 669, 915, 936
Sau3AI	GATC	6 cut(s)	45, 338, 661, 681, 763, 1275
Sau96I	GGNCC	2 cut(s)	36, 306
SchI	GAGTC	1 cut(s)	275
ScrFI	CCNGG	3 cut(s)	152, 482, 932
SfaNI	GCATC	2 cut(s)	787, 1042
SfcI	CTRYAG	2 cut(s)	666, 1056
SinI	GGWCC	2 cut(s)	36, 306
SmiMI	CAYNNNNRTG	1 cut(s)	290
SmlI	CTYRAG	2 cut(s)	7, 840
SmoI	CTYRAG	2 cut(s)	7, 840
SphI	GCATGC	1 cut(s)	79
SseBI	AGGCCT	1 cut(s)	90
SspMI	CTAG	2 cut(s)	387, 392
StuI	AGGCCT	1 cut(s)	90
StyD4I	CCNGG	3 cut(s)	150, 480, 930
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	5 cut(s)	103, 168, 440, 571, 1072
TaiI	ACGT	1 cut(s)	1002
TaqI	TCGA	1 cut(s)	529
TatI	WGTACW	2 cut(s)	202, 440
TfiI	GAWTC	1 cut(s)	282
Tru1I	TTAA	9 cut(s)	471, 768, 816, 897, 1038, 1184, 1263, 1295, 1330
Tru9I	TTAA	9 cut(s)	471, 768, 816, 897, 1038, 1184, 1263, 1295, 1330
TscAI	CASTG	4 cut(s)	108, 292, 621, 1077
TseFI	GTSAC	2 cut(s)	512, 1000
TseI	GCWGC	4 cut(s)	127, 668, 914, 935
Tsp45I	GTSAC	2 cut(s)	512, 1000
TspDTI	ATGAA	4 cut(s)	17, 657, 717, 1235
TspGWI	ACGGA	1 cut(s)	1066
TspRI	CASTG	4 cut(s)	108, 292, 621, 1077
VpaK11BI	GGWCC	2 cut(s)	36, 306
VspI	ATTAAT	1 cut(s)	1263
XagI	CCTNNNNNAGG	1 cut(s)	797
XapI	RAATTY	7 cut(s)	121, 196, 221, 376, 812, 853, 941
XbaI	TCTAGA	1 cut(s)	386
XceI	RCATGY	2 cut(s)	79, 542
XcmI	CCANNNNNNNNNTGG	2 cut(s)	914, 1019
XmnI	GAANNNNTTC	1 cut(s)	720
XspI	CTAG	2 cut(s)	387, 392
ZraI	GACGTC	1 cut(s)	1000

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.