Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8464075.1

Orthogroup ID

OG0001562

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1880

Gene Structure 1880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8464075.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

gaggtatatgaacagcagaaggaattgattttaactggcgagagggttgttctcggaactcttgcttttgatttcaatgtacaccatccgtataaacccctggtggaggcaataaagaaattcaaagtagctcaaaatgctctcgcccaagttgcatggaattttgttaatgacggacttcggacttctctttgcttgcaatttaagccccaccacattgcagctggtgccatttttcttgccgccaagttcctcaaagtaaagcttccatcagatggcgagaaggtctggtggcaagagtttgatgtcaccccacgccaattggaggaggttagcaatcaaatgttggagctatatgaacaaaatagatttccatcttccgatgatgttgaaggaactgtagcaactgctacgaagactaaatccaggatggagcaccaagacctggatcatggctcgtcagttaaaattccggcctcacatgaggcaacaagtaatagtcatttgccggctggaggtacaagatctggaacctcaaggccggcatctaggcctgcatctgagcagtcatatgttgagaatgattaccctgctagaacttcccagagtcaaaataatgattacagaagtgctggaatgacaggttctttggatcaaaatatggaagtcgaagacaatcaccaccccaaagtcgaggaagctcaaaatgtatcaaggtttgtgtccgagggacgtagtgaagaaggccaagaaagagagagtaatgacaggaagggtgaaataagggaaggaggggacaaacattttggccgaaatctggacaattcacaaagtgcccttggtcgatcacctcaagaagctattaagaaaatcgacaaggacaaagtaagggcagcattggagaaacgaaggaaagccactgctgatatgaccaggaaaacagatttgctggatgaggatgatctgattgagagggagctggaagatggtattgaactggctggtgggagtgagaaaaacaaacgggacagaaggcaaagctggtccaagtcctcacatagacaagaacatgagagccttcatcagggaaaacatcgagagggtgttggagatggtggaccacgttttagtactattgaagaaggtgaggtatcagcctttgaagctggacatgaatttccgtcacccaaatcaagcagtcgcaagagaaaggaaggaagccccctagaaattgttgcagaaaagaaacagagacatgattaccgccataatcactttgaccatactgaaaatcataacagggtaggcagagttggccacactgaaagggataataaaaggcctgtacaggagaatcatgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

454

Amino Acids

51.37

Weight (kDa)

6.32

Isoelectric Point (pI)

52.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19600 AT5G45190 AT5G45190 AT5G45190
fragaria_vesca	FvH4_3g15520 FvH4_3g15520 FvH4_3g15520 FvH4_3g15521 FvH4_3g15521
malus_domestica	MD05G1222500.v1.1 MD05G1222600.v1.1 MD10G1204100.v1.1 MD10G1204200.v1.1
prunus_persica	Prupe.4G137700_v2.0.a1 Prupe.4G137800_v2.0.a1
pyrus_communis	pycom05g20520 pycom10g17480 pycom10g17490
rosa_chinensis	RchiOBHm_Chr5g0026141 RchiOBHm_Chr5g0026151
rosa_laevigata	RLG00000032906 RLG00000032907
rosa_multiflora	Rmu_co8230253.1_g000001 Rmu_co8464075.1_g000001 Rmu_sc0002806.1_g000001 Rmu_sc0002909.1_g000016 Rmu_sc0009679.1_g000001 Rmu_sc0009679.1_g000002 Rmu_sc0029141.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053050 Rroxscaffold_1G00053160 Rroxscaffold_1G00053170
rosa_rugosa	Rorug05G0091000.1
rosa_samantha	Rh2CG288400 Rh5AG183800 Rh5AG183900 Rh5AG184000 Rh5BG180600 Rh5BG180700 Rh5BG180800 Rh5CG199600 Rh5CG199700 Rh5CG199800 Rh5CG201400 Rh5DG182200 Rh5DG182300 Rh5DG182400
rosa_wichuraiana	Rw5G016640 Rw5G016650 Rw5G016810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	227
AccB7I	CCANNNNNTGG	2 cut(s)	275, 445
AciI	CCGC	2 cut(s)	243, 1264
AclWI	GGATC	2 cut(s)	456, 660
AcoI	YGGCCR	2 cut(s)	808, 1315
AcsI	RAATTY	4 cut(s)	119, 160, 468, 1175
AdeI	CACNNNGTG	1 cut(s)	833
AfaI	GTAC	4 cut(s)	81, 520, 1132, 1347
AfiI	CCNNNNNNNGG	7 cut(s)	106, 275, 325, 445, 515, 817, 1084
AgsI	TTSAA	6 cut(s)	76, 124, 392, 995, 1139, 1163
AjnI	CCWGG	4 cut(s)	99, 425, 444, 932
AluBI	AGCT	9 cut(s)	131, 224, 265, 352, 701, 860, 979, 1041, 1166
AluI	AGCT	9 cut(s)	131, 224, 265, 352, 701, 860, 979, 1041, 1166
Alw21I	GWGCWC	1 cut(s)	438
Alw26I	GTCTC	1 cut(s)	1246
AlwI	GGATC	2 cut(s)	456, 660
AoxI	GGCC	7 cut(s)	474, 539, 551, 745, 808, 1315, 1340
ApeKI	GCWGC	2 cut(s)	221, 893
ApoI	RAATTY	4 cut(s)	119, 160, 468, 1175
ArsI	GACNNNNNNTTYG	4 cut(s)	631, 663, 788, 820
AspS9I	GGNCC	2 cut(s)	1044, 1118
AsuHPI	GGTGA	6 cut(s)	301, 671, 788, 840, 1157, 1176
AvaII	GGWCC	2 cut(s)	1044, 1118
BaeGI	GKGCMC	1 cut(s)	838
BalI	TGGCCA	1 cut(s)	1317
BanI	GGYRCC	1 cut(s)	227
BbsI	GAAGAC	2 cut(s)	422, 678
Bbv12I	GWGCWC	1 cut(s)	438
BbvI	GCAGC	2 cut(s)	233, 905
BccI	CCATC	7 cut(s)	93, 269, 277, 382, 424, 980, 1106
BciT130I	CCWGG	4 cut(s)	101, 427, 446, 934
BcoDI	GTCTC	1 cut(s)	1246
BfaI	CTAG	3 cut(s)	549, 594, 1226
BfmI	CTRYAG	1 cut(s)	399
BglII	AGATCT	1 cut(s)	524
BisI	GCNGC	3 cut(s)	222, 243, 894
BlsI	GCNGC	3 cut(s)	223, 244, 895
BmcAI	AGTACT	1 cut(s)	1132
Bme1390I	CCNGG	4 cut(s)	101, 427, 446, 934
Bme18I	GGWCC	2 cut(s)	1044, 1118
BmgT120I	GGNCC	2 cut(s)	1044, 1118
BmiI	GGNNCC	2 cut(s)	229, 532
BmrFI	CCNGG	4 cut(s)	101, 427, 446, 934
BmsI	GCATC	2 cut(s)	554, 566
BpiI	GAAGAC	2 cut(s)	422, 678
BpmI	CTGGAG	1 cut(s)	534
BpuEI	CTTGAG	2 cut(s)	520, 837
BsaBI	GATNNNNATC	1 cut(s)	373
BsaJI	CCNNGG	3 cut(s)	99, 726, 838
Bsc4I	CCNNNNNNNGG	7 cut(s)	106, 275, 325, 445, 515, 817, 1084
Bse118I	RCCGGY	2 cut(s)	508, 541
Bse1I	ACTGG	2 cut(s)	40, 1002
Bse3DI	GCAATG	1 cut(s)	216
Bse8I	GATNNNNATC	1 cut(s)	373
BseBI	CCWGG	4 cut(s)	101, 427, 446, 934
BseDI	CCNNGG	3 cut(s)	99, 726, 838
BseGI	GGATG	4 cut(s)	85, 435, 958, 964
BseJI	GATNNNNATC	1 cut(s)	373
BseLI	CCNNNNNNNGG	7 cut(s)	106, 275, 325, 445, 515, 817, 1084
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	1 cut(s)	552
BseNI	ACTGG	2 cut(s)	40, 1002
BseRI	GAGGAG	1 cut(s)	341
BseSI	GKGCMC	1 cut(s)	838
BseXI	GCAGC	2 cut(s)	233, 905
BshFI	GGCC	7 cut(s)	476, 541, 553, 747, 810, 1317, 1342
BshNI	GGYRCC	1 cut(s)	227
BsiHKAI	GWGCWC	1 cut(s)	438
BsiSI	CCGG	3 cut(s)	473, 509, 542
BslFI	GGGAC	3 cut(s)	744, 809, 1040
BslI	CCNNNNNNNGG	7 cut(s)	106, 275, 325, 445, 515, 817, 1084
BsmAI	GTCTC	1 cut(s)	1246
BsmFI	GGGAC	3 cut(s)	744, 809, 1040
BsnI	GGCC	7 cut(s)	476, 541, 553, 747, 810, 1317, 1342
Bsp1286I	GDGCHC	2 cut(s)	438, 838
Bsp1407I	TGTACA	2 cut(s)	79, 1345
Bsp143I	GATC	5 cut(s)	448, 524, 652, 845, 961
BspACI	CCGC	2 cut(s)	243, 1264
BspANI	GGCC	7 cut(s)	476, 541, 553, 747, 810, 1317, 1342
BspCNI	CTCAG	1 cut(s)	553
BspLI	GGNNCC	2 cut(s)	229, 532
BspPI	GGATC	2 cut(s)	456, 660
BspT107I	GGYRCC	1 cut(s)	227
BsrDI	GCAATG	1 cut(s)	216
BsrFI	RCCGGY	2 cut(s)	508, 541
BsrGI	TGTACA	2 cut(s)	79, 1345
BsrI	ACTGG	2 cut(s)	40, 1002
BssAI	RCCGGY	2 cut(s)	508, 541
BssECI	CCNNGG	3 cut(s)	99, 726, 838
BssMI	GATC	5 cut(s)	448, 524, 652, 845, 961
BssT1I	CCWWGG	1 cut(s)	838
Bst2UI	CCWGG	4 cut(s)	101, 427, 446, 934
Bst4CI	ACNGT	1 cut(s)	400
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstAUI	TGTACA	2 cut(s)	79, 1345
BstC8I	GCNNGC	4 cut(s)	197, 510, 543, 555
BstDEI	CTNAG	1 cut(s)	561
BstENI	CCTNNNNNAGG	2 cut(s)	104, 1082
BstF5I	GGATG	4 cut(s)	85, 435, 958, 964
BstKTI	GATC	5 cut(s)	451, 527, 655, 848, 964
BstMAI	GTCTC	1 cut(s)	1246
BstMBI	GATC	5 cut(s)	448, 524, 652, 845, 961
BstMWI	GCNNNNNNNGC	6 cut(s)	137, 152, 205, 227, 1163, 1314
BstNI	CCWGG	4 cut(s)	101, 427, 446, 934
BstSCI	CCNGG	4 cut(s)	99, 425, 444, 932
BstSFI	CTRYAG	1 cut(s)	399
BstSLI	GKGCMC	1 cut(s)	838
BstV1I	GCAGC	2 cut(s)	233, 905
BstV2I	GAAGAC	2 cut(s)	422, 678
BstX2I	RGATCY	1 cut(s)	524
BstYI	RGATCY	1 cut(s)	524
BsuRI	GGCC	7 cut(s)	476, 541, 553, 747, 810, 1317, 1342
BtsCI	GGATG	4 cut(s)	85, 435, 958, 964
BtsI	GCAGTG	1 cut(s)	918
BtsIMutI	CAGTG	2 cut(s)	918, 1320
Cac8I	GCNNGC	4 cut(s)	197, 510, 543, 555
Cfr10I	RCCGGY	2 cut(s)	508, 541
Cfr13I	GGNCC	2 cut(s)	1044, 1118
Csp6I	GTAC	4 cut(s)	80, 519, 1131, 1346
CspCI	CAANNNNNGTGG	2 cut(s)	303, 338
CviAII	CATG	7 cut(s)	156, 452, 482, 1070, 1172, 1256, 1358
CviQI	GTAC	4 cut(s)	80, 519, 1131, 1346
DdeI	CTNAG	1 cut(s)	561
DpnI	GATC	5 cut(s)	450, 526, 654, 847, 963
DpnII	GATC	5 cut(s)	448, 524, 652, 845, 961
DraIII	CACNNNGTG	1 cut(s)	833
EaeI	YGGCCR	2 cut(s)	808, 1315
Eco130I	CCWWGG	1 cut(s)	838
Eco147I	AGGCCT	2 cut(s)	553, 1342
Eco47I	GGWCC	2 cut(s)	1044, 1118
EcoNI	CCTNNNNNAGG	2 cut(s)	104, 1082
EcoRII	CCWGG	4 cut(s)	99, 425, 444, 932
EcoT14I	CCWWGG	1 cut(s)	838
ErhI	CCWWGG	1 cut(s)	838
FaeI	CATG	7 cut(s)	159, 455, 485, 1073, 1175, 1259, 1361
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FaqI	GGGAC	3 cut(s)	744, 809, 1040
FatI	CATG	7 cut(s)	155, 451, 481, 1069, 1171, 1255, 1357
FauNDI	CATATG	1 cut(s)	571
Fnu4HI	GCNGC	3 cut(s)	222, 243, 894
FokI	GGATG	4 cut(s)	72, 442, 965, 971
Fsp4HI	GCNGC	3 cut(s)	222, 243, 894
FspBI	CTAG	3 cut(s)	549, 594, 1226
GluI	GCNGC	3 cut(s)	222, 243, 894
GsuI	CTGGAG	1 cut(s)	534
HaeIII	GGCC	7 cut(s)	476, 541, 553, 747, 810, 1317, 1342
HapII	CCGG	3 cut(s)	473, 509, 542
Hin1II	CATG	7 cut(s)	159, 455, 485, 1073, 1175, 1259, 1361
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	2 cut(s)	607, 1354
HpaII	CCGG	3 cut(s)	473, 509, 542
HphI	GGTGA	6 cut(s)	301, 671, 788, 840, 1157, 1176
Hpy166II	GTNNAC	2 cut(s)	82, 1118
Hpy188I	TCNGA	8 cut(s)	56, 183, 274, 382, 562, 727, 966, 1364
Hpy188III	TCNNGA	4 cut(s)	528, 818, 854, 1097
Hpy8I	GTNNAC	2 cut(s)	82, 1118
HpyCH4III	ACNGT	1 cut(s)	400
HpyCH4IV	ACGT	2 cut(s)	733, 1123
HpyCH4V	TGCA	5 cut(s)	155, 199, 221, 557, 1238
HpyF10VI	GCNNNNNNNGC	6 cut(s)	137, 152, 205, 227, 1163, 1314
HpyF3I	CTNAG	1 cut(s)	561
HpySE526I	ACGT	2 cut(s)	733, 1123
Hsp92II	CATG	7 cut(s)	159, 455, 485, 1073, 1175, 1259, 1361
KroI	GCCGGC	2 cut(s)	508, 541
KroNI	GCCGGC	2 cut(s)	510, 543
Kzo9I	GATC	5 cut(s)	448, 524, 652, 845, 961
LmnI	GCTCC	3 cut(s)	349, 433, 976
Lsp1109I	GCAGC	2 cut(s)	233, 905
LweI	GCATC	2 cut(s)	554, 566
MaeI	CTAG	3 cut(s)	549, 594, 1226
MaeII	ACGT	2 cut(s)	733, 1123
MaeIII	GTNAC	2 cut(s)	307, 1182
MalI	GATC	5 cut(s)	450, 526, 654, 847, 963
MboI	GATC	5 cut(s)	448, 524, 652, 845, 961
MboII	GAAGA	6 cut(s)	369, 427, 683, 752, 995, 1151
MfeI	CAATTG	1 cut(s)	320
MflI	RGATCY	1 cut(s)	524
MhlI	GDGCHC	2 cut(s)	438, 838
MlsI	TGGCCA	1 cut(s)	1317
MluCI	AATT	9 cut(s)	23, 119, 160, 200, 320, 468, 823, 1175, 1230
MluNI	TGGCCA	1 cut(s)	1317
MlyI	GAGTC	1 cut(s)	616
MmeI	TCCRAC	2 cut(s)	327, 1087
Mox20I	TGGCCA	1 cut(s)	1317
MroNI	GCCGGC	2 cut(s)	508, 541
MscI	TGGCCA	1 cut(s)	1317
MseI	TTAA	5 cut(s)	32, 168, 204, 465, 864
Msp20I	TGGCCA	1 cut(s)	1317
MspA1I	CMGCKG	1 cut(s)	224
MspI	CCGG	3 cut(s)	473, 509, 542
MspR9I	CCNGG	4 cut(s)	101, 427, 446, 934
MunI	CAATTG	1 cut(s)	320
MvaI	CCWGG	4 cut(s)	101, 427, 446, 934
MwoI	GCNNNNNNNGC	6 cut(s)	137, 152, 205, 227, 1163, 1314
NaeI	GCCGGC	2 cut(s)	510, 543
NdeI	CATATG	1 cut(s)	571
NdeII	GATC	5 cut(s)	448, 524, 652, 845, 961
NgoMIV	GCCGGC	2 cut(s)	508, 541
NlaIII	CATG	7 cut(s)	159, 455, 485, 1073, 1175, 1259, 1361
NlaIV	GGNNCC	2 cut(s)	229, 532
NmuCI	GTSAC	2 cut(s)	307, 1182
PceI	AGGCCT	2 cut(s)	553, 1342
PdiI	GCCGGC	2 cut(s)	510, 543
PfeI	GAWTC	1 cut(s)	1354
PflMI	CCANNNNNTGG	2 cut(s)	275, 445
PfoI	TCCNGGA	1 cut(s)	425
PkrI	GCNGC	3 cut(s)	223, 244, 895
PleI	GAGTC	1 cut(s)	615
PpsI	GAGTC	1 cut(s)	615
Psp6I	CCWGG	4 cut(s)	99, 425, 444, 932
PspGI	CCWGG	4 cut(s)	99, 425, 444, 932
PspN4I	GGNNCC	2 cut(s)	229, 532
PspPI	GGNCC	2 cut(s)	1044, 1118
PsuI	RGATCY	1 cut(s)	524
PvuII	CAGCTG	1 cut(s)	224
RsaI	GTAC	4 cut(s)	81, 520, 1132, 1347
RsaNI	GTAC	4 cut(s)	80, 519, 1131, 1346
SaqAI	TTAA	5 cut(s)	32, 168, 204, 465, 864
SatI	GCNGC	3 cut(s)	222, 243, 894
Sau3AI	GATC	5 cut(s)	448, 524, 652, 845, 961
Sau96I	GGNCC	2 cut(s)	1044, 1118
ScaI	AGTACT	1 cut(s)	1132
SchI	GAGTC	1 cut(s)	616
ScrFI	CCNGG	4 cut(s)	101, 427, 446, 934
SduI	GDGCHC	2 cut(s)	438, 838
SfaNI	GCATC	2 cut(s)	554, 566
SfcI	CTRYAG	1 cut(s)	399
SinI	GGWCC	2 cut(s)	1044, 1118
SmlI	CTYRAG	2 cut(s)	535, 852
SmoI	CTYRAG	2 cut(s)	535, 852
Sse9I	AATT	9 cut(s)	23, 119, 160, 200, 320, 468, 823, 1175, 1230
SseBI	AGGCCT	2 cut(s)	553, 1342
SsiI	CCGC	2 cut(s)	243, 1264
SspMI	CTAG	3 cut(s)	549, 594, 1226
StuI	AGGCCT	2 cut(s)	553, 1342
StyD4I	CCNGG	4 cut(s)	99, 425, 444, 932
StyI	CCWWGG	1 cut(s)	838
TaaI	ACNGT	1 cut(s)	400
TaiI	ACGT	2 cut(s)	736, 1126
TaqI	TCGA	5 cut(s)	669, 693, 844, 873, 1096
TasI	AATT	9 cut(s)	23, 119, 160, 200, 320, 468, 823, 1175, 1230
TatI	WGTACW	3 cut(s)	79, 1130, 1345
TauI	GCSGC	1 cut(s)	245
TfiI	GAWTC	1 cut(s)	1354
Tru1I	TTAA	5 cut(s)	32, 168, 204, 465, 864
Tru9I	TTAA	5 cut(s)	32, 168, 204, 465, 864
TscAI	CASTG	2 cut(s)	925, 1327
TseFI	GTSAC	2 cut(s)	307, 1182
TseI	GCWGC	2 cut(s)	221, 893
Tsp45I	GTSAC	2 cut(s)	307, 1182
TspDTI	ATGAA	4 cut(s)	24, 372, 1070, 1188
TspGWI	ACGGA	3 cut(s)	78, 189, 1170
TspRI	CASTG	2 cut(s)	925, 1327
Van91I	CCANNNNNTGG	2 cut(s)	275, 445
VpaK11BI	GGWCC	2 cut(s)	1044, 1118
XagI	CCTNNNNNAGG	2 cut(s)	104, 1082
XapI	RAATTY	4 cut(s)	119, 160, 468, 1175
XcmI	CCANNNNNNNNNTGG	1 cut(s)	221
XspI	CTAG	3 cut(s)	549, 594, 1226
ZrmI	AGTACT	1 cut(s)	1132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.