Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001562

Physical Location & Seq

Genomic Coordinates Forward (+)

32427830 .. 32428267

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG288400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGACCAGGAAAACAGATTTGCTGGATGAAGATGATCTGATTGAGAGGGAGCTGGAAGATGGTATTGAACTGGCTGGTGGGAGTGAGAAAAACAAACGGGACAGAAGGCAAAGCTGGTCCAAGTCCTCACATAGACAAGAACATGAGAGCCTTCGTCAGGGAAAACATCGAGAGGGTGTTGGAGATGGTGGACCACGTTTTAGTACTATTGAAGAAGGTGAGGTATCAGCCTTTGAAGCTGGACATGAATTTTCGTCATCCAAATCAGGCAGTCGCAAGAGAAAGGAAGGAAGCCCCCTAGAAATTGTTGCAAAAAAGAAACAGAGACATGATTATCGCCATAATCACTTTGACCATACTGAAAATCATAACAGGGTAGGCAGAGTTGGCCACACTGAAAGGGATAATAAAAGGCCTGTACAGGAGAATCATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

145

Amino Acids

16.76

Weight (kDa)

7.22

Isoelectric Point (pI)

67.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19600 AT5G45190 AT5G45190 AT5G45190
fragaria_vesca	FvH4_3g15520 FvH4_3g15520 FvH4_3g15520 FvH4_3g15521 FvH4_3g15521
malus_domestica	MD05G1222500.v1.1 MD05G1222600.v1.1 MD10G1204100.v1.1 MD10G1204200.v1.1
prunus_persica	Prupe.4G137700_v2.0.a1 Prupe.4G137800_v2.0.a1
pyrus_communis	pycom05g20520 pycom10g17480 pycom10g17490
rosa_chinensis	RchiOBHm_Chr5g0026141 RchiOBHm_Chr5g0026151
rosa_laevigata	RLG00000032906 RLG00000032907
rosa_multiflora	Rmu_co8230253.1_g000001 Rmu_co8464075.1_g000001 Rmu_sc0002806.1_g000001 Rmu_sc0002909.1_g000016 Rmu_sc0009679.1_g000001 Rmu_sc0009679.1_g000002 Rmu_sc0029141.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053050 Rroxscaffold_1G00053160 Rroxscaffold_1G00053170
rosa_rugosa	Rorug05G0091000.1
rosa_samantha	Rh2CG288400 Rh5AG183800 Rh5AG183900 Rh5AG184000 Rh5BG180600 Rh5BG180700 Rh5BG180800 Rh5CG199600 Rh5CG199700 Rh5CG199800 Rh5CG201400 Rh5DG182200 Rh5DG182300 Rh5DG182400
rosa_wichuraiana	Rw5G016640 Rw5G016650 Rw5G016810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	388
AcsI	RAATTY	1 cut(s)	248
AfaI	GTAC	2 cut(s)	205, 420
AfiI	CCNNNNNNNGG	1 cut(s)	157
AgsI	TTSAA	3 cut(s)	68, 212, 236
AjnI	CCWGG	1 cut(s)	5
AluBI	AGCT	3 cut(s)	52, 114, 239
AluI	AGCT	3 cut(s)	52, 114, 239
Alw26I	GTCTC	1 cut(s)	319
AoxI	GGCC	2 cut(s)	388, 413
ApoI	RAATTY	1 cut(s)	248
AspS9I	GGNCC	2 cut(s)	117, 191
AsuHPI	GGTGA	1 cut(s)	230
AvaII	GGWCC	2 cut(s)	117, 191
BalI	TGGCCA	1 cut(s)	390
BccI	CCATC	2 cut(s)	53, 179
BciT130I	CCWGG	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	319
BfaI	CTAG	1 cut(s)	299
BmcAI	AGTACT	1 cut(s)	205
Bme1390I	CCNGG	1 cut(s)	7
Bme18I	GGWCC	2 cut(s)	117, 191
BmgT120I	GGNCC	2 cut(s)	117, 191
BmrFI	CCNGG	1 cut(s)	7
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
Bse1I	ACTGG	1 cut(s)	75
BseBI	CCWGG	1 cut(s)	7
BseGI	GGATG	2 cut(s)	31, 257
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseNI	ACTGG	1 cut(s)	75
BshFI	GGCC	2 cut(s)	390, 415
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	1 cut(s)	157
BsmAI	GTCTC	1 cut(s)	319
BsmFI	GGGAC	1 cut(s)	113
BsnI	GGCC	2 cut(s)	390, 415
Bsp1407I	TGTACA	1 cut(s)	418
Bsp143I	GATC	1 cut(s)	34
BspANI	GGCC	2 cut(s)	390, 415
BsrGI	TGTACA	1 cut(s)	418
BsrI	ACTGG	1 cut(s)	75
BssMI	GATC	1 cut(s)	34
Bst2UI	CCWGG	1 cut(s)	7
BstAUI	TGTACA	1 cut(s)	418
BstENI	CCTNNNNNAGG	1 cut(s)	155
BstF5I	GGATG	2 cut(s)	31, 257
BstKTI	GATC	1 cut(s)	37
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 387
BstNI	CCWGG	1 cut(s)	7
BstSCI	CCNGG	1 cut(s)	5
BsuRI	GGCC	2 cut(s)	390, 415
BtsCI	GGATG	2 cut(s)	31, 257
BtsIMutI	CAGTG	1 cut(s)	393
Cfr13I	GGNCC	2 cut(s)	117, 191
Csp6I	GTAC	2 cut(s)	204, 419
CviAII	CATG	4 cut(s)	143, 245, 329, 431
CviJI	RGCY	9 cut(s)	52, 74, 114, 150, 230, 239, 294, 390, 415
CviKI_1	RGCY	9 cut(s)	52, 74, 114, 150, 230, 239, 294, 390, 415
CviQI	GTAC	2 cut(s)	204, 419
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
EaeI	YGGCCR	1 cut(s)	388
Eco147I	AGGCCT	1 cut(s)	415
Eco47I	GGWCC	2 cut(s)	117, 191
EcoNI	CCTNNNNNAGG	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	5
FaeI	CATG	4 cut(s)	146, 248, 332, 434
FaiI	YATR	8 cut(s)	132, 144, 246, 330, 342, 357, 369, 432
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	4 cut(s)	142, 244, 328, 430
FokI	GGATG	2 cut(s)	38, 244
FspBI	CTAG	1 cut(s)	299
HaeIII	GGCC	2 cut(s)	390, 415
Hin1II	CATG	4 cut(s)	146, 248, 332, 434
HinfI	GANTC	1 cut(s)	427
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	1 cut(s)	191
Hpy188I	TCNGA	1 cut(s)	39
Hpy188III	TCNNGA	1 cut(s)	170
Hpy8I	GTNNAC	1 cut(s)	191
HpyAV	CCTTC	4 cut(s)	99, 161, 209, 281
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	1 cut(s)	311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 387
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	4 cut(s)	146, 248, 332, 434
Kzo9I	GATC	1 cut(s)	34
LmnI	GCTCC	1 cut(s)	49
MaeI	CTAG	1 cut(s)	299
MaeII	ACGT	1 cut(s)	196
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	3 cut(s)	41, 68, 224
MlsI	TGGCCA	1 cut(s)	390
MluCI	AATT	2 cut(s)	248, 303
MluNI	TGGCCA	1 cut(s)	390
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	4 cut(s)	39, 136, 166, 214
Mox20I	TGGCCA	1 cut(s)	390
MscI	TGGCCA	1 cut(s)	390
Msp20I	TGGCCA	1 cut(s)	390
MspR9I	CCNGG	1 cut(s)	7
MvaI	CCWGG	1 cut(s)	7
MwoI	GCNNNNNNNGC	2 cut(s)	236, 387
NdeII	GATC	1 cut(s)	34
NlaIII	CATG	4 cut(s)	146, 248, 332, 434
PceI	AGGCCT	1 cut(s)	415
PfeI	GAWTC	1 cut(s)	427
Psp6I	CCWGG	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	5
PspPI	GGNCC	2 cut(s)	117, 191
RsaI	GTAC	2 cut(s)	205, 420
RsaNI	GTAC	2 cut(s)	204, 419
Sau3AI	GATC	1 cut(s)	34
Sau96I	GGNCC	2 cut(s)	117, 191
ScaI	AGTACT	1 cut(s)	205
ScrFI	CCNGG	1 cut(s)	7
SetI	ASST	6 cut(s)	54, 116, 199, 220, 225, 241
SinI	GGWCC	2 cut(s)	117, 191
Sse9I	AATT	2 cut(s)	248, 303
SseBI	AGGCCT	1 cut(s)	415
SspMI	CTAG	1 cut(s)	299
StuI	AGGCCT	1 cut(s)	415
StyD4I	CCNGG	1 cut(s)	5
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	1 cut(s)	169
TasI	AATT	2 cut(s)	248, 303
TatI	WGTACW	2 cut(s)	203, 418
TfiI	GAWTC	1 cut(s)	427
TscAI	CASTG	1 cut(s)	400
TspDTI	ATGAA	2 cut(s)	42, 261
TspRI	CASTG	1 cut(s)	400
VpaK11BI	GGWCC	2 cut(s)	117, 191
XagI	CCTNNNNNAGG	1 cut(s)	155
XapI	RAATTY	1 cut(s)	248
XspI	CTAG	1 cut(s)	299
ZrmI	AGTACT	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.