Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001562

Physical Location & Seq

Genomic Coordinates Forward (+)

20232546 .. 20234682

Gene Structure 2137 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG201400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGCCTTCCTTTTTGTCTGGCGATTCTTCTAACTTTGCTGTGAGTGAAAGTAGTTGCTATAGACAGACTGAGGATAAAGAGGAAGGAGGCTATTGGTACTTTTCCAGGAAGGAAATTGAAGAAAATTCTCCATCTAAAGTAGATGGCATAGACTTGAAGAAAGAGACCATTGCAACAGTGTGTATGTTTCTCGCCGGTAAGGTTGAAGAAACTCCCCGGCCTCTGAAAGATGTTATCCTTTTCTCCTATGAAATTATTCATAAGAAGGATCCTGCAGCAGCTCAGAGAATCAAGCAAAAGGAGGTATATGAACAGCAGAAGGAACTGATTTTAACTGGCGAGAGGGTTGTTCTTGGAACTCTTGCTTTTGATTTCAATGTACACCATCCGTATAAACCCCTGGTGGAGGCAATAAAGAAATTCAAAGTAGCTCAAAATGCCCTCGCCCAAGTTGCATGGAATTTTGTTAATGACGGACTTCGGACTTCTCTTTGCTTGCAATTTAAGCCCCACCACATTGCAGCTGGTGCCATTTTTCTTGCCACCAATTACCTCAAAGTAAAGCTTCCATCAGATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

193

Amino Acids

21.84

Weight (kDa)

6.53

Isoelectric Point (pI)

39.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	53 - 125	6.9e-06	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19600 AT5G45190 AT5G45190 AT5G45190
fragaria_vesca	FvH4_3g15520 FvH4_3g15520 FvH4_3g15520 FvH4_3g15521 FvH4_3g15521
malus_domestica	MD05G1222500.v1.1 MD05G1222600.v1.1 MD10G1204100.v1.1 MD10G1204200.v1.1
prunus_persica	Prupe.4G137700_v2.0.a1 Prupe.4G137800_v2.0.a1
pyrus_communis	pycom05g20520 pycom10g17480 pycom10g17490
rosa_chinensis	RchiOBHm_Chr5g0026141 RchiOBHm_Chr5g0026151
rosa_laevigata	RLG00000032906 RLG00000032907
rosa_multiflora	Rmu_co8230253.1_g000001 Rmu_co8464075.1_g000001 Rmu_sc0002806.1_g000001 Rmu_sc0002909.1_g000016 Rmu_sc0009679.1_g000001 Rmu_sc0009679.1_g000002 Rmu_sc0029141.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053050 Rroxscaffold_1G00053160 Rroxscaffold_1G00053170
rosa_rugosa	Rorug05G0091000.1
rosa_samantha	Rh2CG288400 Rh5AG183800 Rh5AG183900 Rh5AG184000 Rh5BG180600 Rh5BG180700 Rh5BG180800 Rh5CG199600 Rh5CG199700 Rh5CG199800 Rh5CG201400 Rh5DG182200 Rh5DG182300 Rh5DG182400
rosa_wichuraiana	Rw5G016640 Rw5G016650 Rw5G016810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	527
AclWI	GGATC	2 cut(s)	263, 276
AcsI	RAATTY	3 cut(s)	124, 419, 460
AfaI	GTAC	2 cut(s)	98, 381
AfiI	CCNNNNNNNGG	1 cut(s)	406
AgsI	TTSAA	5 cut(s)	119, 157, 206, 376, 424
AjnI	CCWGG	2 cut(s)	104, 399
AluBI	AGCT	4 cut(s)	281, 431, 524, 565
AluI	AGCT	4 cut(s)	281, 431, 524, 565
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	2 cut(s)	263, 276
AoxI	GGCC	1 cut(s)	218
ApeKI	GCWGC	3 cut(s)	275, 278, 521
ApoI	RAATTY	3 cut(s)	124, 419, 460
Asp700I	GAANNNNTTC	1 cut(s)	255
AsuC2I	CCSGG	1 cut(s)	217
BamHI	GGATCC	1 cut(s)	268
BanI	GGYRCC	1 cut(s)	527
BbvI	GCAGC	3 cut(s)	287, 290, 533
BccI	CCATC	4 cut(s)	137, 139, 393, 577
BciT130I	CCWGG	2 cut(s)	106, 401
BcnI	CCSGG	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	158
BfaI	CTAG	1 cut(s)	580
BfmI	CTRYAG	2 cut(s)	58, 273
BisI	GCNGC	3 cut(s)	276, 279, 522
BlsI	GCNGC	3 cut(s)	277, 280, 523
Bme1390I	CCNGG	3 cut(s)	106, 217, 401
BmiI	GGNNCC	2 cut(s)	270, 529
BmrFI	CCNGG	3 cut(s)	106, 217, 401
BpuMI	CCSGG	1 cut(s)	217
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	2 cut(s)	215, 399
Bsc4I	CCNNNNNNNGG	1 cut(s)	406
Bse118I	RCCGGY	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	340
Bse3DI	GCAATG	2 cut(s)	168, 516
BseBI	CCWGG	2 cut(s)	106, 401
BseDI	CCNNGG	2 cut(s)	215, 399
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	1 cut(s)	406
BseMI	GCAATG	2 cut(s)	168, 516
BseMII	CTCAG	2 cut(s)	60, 296
BseNI	ACTGG	1 cut(s)	340
BseXI	GCAGC	3 cut(s)	287, 290, 533
BshFI	GGCC	1 cut(s)	220
BshNI	GGYRCC	1 cut(s)	527
BsiSI	CCGG	2 cut(s)	195, 217
BslI	CCNNNNNNNGG	1 cut(s)	406
BsmAI	GTCTC	1 cut(s)	158
BsnI	GGCC	1 cut(s)	220
Bso31I	GGTCTC	1 cut(s)	158
Bsp1407I	TGTACA	1 cut(s)	379
Bsp143I	GATC	1 cut(s)	268
BspANI	GGCC	1 cut(s)	220
BspCNI	CTCAG	2 cut(s)	61, 295
BspLI	GGNNCC	2 cut(s)	270, 529
BspMAI	CTGCAG	1 cut(s)	277
BspPI	GGATC	2 cut(s)	263, 276
BspT107I	GGYRCC	1 cut(s)	527
BspTNI	GGTCTC	1 cut(s)	158
BsrDI	GCAATG	2 cut(s)	168, 516
BsrFI	RCCGGY	1 cut(s)	194
BsrGI	TGTACA	1 cut(s)	379
BsrI	ACTGG	1 cut(s)	340
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	2 cut(s)	215, 399
BssMI	GATC	1 cut(s)	268
Bst2UI	CCWGG	2 cut(s)	106, 401
Bst4CI	ACNGT	1 cut(s)	178
BstAPI	GCANNNNNTGC	1 cut(s)	527
BstAUI	TGTACA	1 cut(s)	379
BstC8I	GCNNGC	1 cut(s)	497
BstDEI	CTNAG	2 cut(s)	69, 282
BstENI	CCTNNNNNAGG	1 cut(s)	404
BstF5I	GGATG	1 cut(s)	385
BstKTI	GATC	1 cut(s)	271
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	4 cut(s)	437, 452, 505, 527
BstNI	CCWGG	2 cut(s)	106, 401
BstSCI	CCNGG	3 cut(s)	104, 215, 399
BstSFI	CTRYAG	2 cut(s)	58, 273
BstV1I	GCAGC	3 cut(s)	287, 290, 533
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BsuRI	GGCC	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	385
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	497
Cfr10I	RCCGGY	1 cut(s)	194
Csp6I	GTAC	2 cut(s)	97, 380
CviAII	CATG	1 cut(s)	456
CviJI	RGCY	7 cut(s)	90, 220, 281, 431, 508, 524, 565
CviKI_1	RGCY	7 cut(s)	90, 220, 281, 431, 508, 524, 565
CviQI	GTAC	2 cut(s)	97, 380
DdeI	CTNAG	2 cut(s)	69, 282
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
Eco31I	GGTCTC	1 cut(s)	158
EcoNI	CCTNNNNNAGG	1 cut(s)	404
EcoRII	CCWGG	2 cut(s)	104, 399
FaeI	CATG	1 cut(s)	459
FaiI	YATR	9 cut(s)	60, 149, 185, 249, 261, 307, 309, 393, 457
FalI	AAGNNNNNCTT	2 cut(s)	549, 581
FatI	CATG	1 cut(s)	455
Fnu4HI	GCNGC	3 cut(s)	276, 279, 522
FokI	GGATG	1 cut(s)	372
Fsp4HI	GCNGC	3 cut(s)	276, 279, 522
FspBI	CTAG	1 cut(s)	580
GluI	GCNGC	3 cut(s)	276, 279, 522
HaeIII	GGCC	1 cut(s)	220
HapII	CCGG	2 cut(s)	195, 217
Hin1II	CATG	1 cut(s)	459
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	2 cut(s)	23, 288
HpaII	CCGG	2 cut(s)	195, 217
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	4 cut(s)	225, 285, 483, 574
Hpy8I	GTNNAC	1 cut(s)	382
HpyAV	CCTTC	5 cut(s)	15, 77, 103, 259, 313
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4V	TGCA	5 cut(s)	173, 275, 455, 499, 521
HpyF10VI	GCNNNNNNNGC	4 cut(s)	437, 452, 505, 527
HpyF3I	CTNAG	2 cut(s)	69, 282
Hsp92II	CATG	1 cut(s)	459
Kzo9I	GATC	1 cut(s)	268
Lsp1109I	GCAGC	3 cut(s)	287, 290, 533
MaeI	CTAG	1 cut(s)	580
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	4 cut(s)	18, 131, 169, 218
MflI	RGATCY	1 cut(s)	268
MluCI	AATT	7 cut(s)	114, 124, 252, 419, 460, 500, 547
MnlI	CCTC	9 cut(s)	64, 73, 80, 231, 295, 336, 400, 452, 563
MroXI	GAANNNNTTC	1 cut(s)	255
MseI	TTAA	3 cut(s)	332, 468, 504
MspA1I	CMGCKG	1 cut(s)	524
MspI	CCGG	2 cut(s)	195, 217
MspR9I	CCNGG	3 cut(s)	106, 217, 401
MvaI	CCWGG	2 cut(s)	106, 401
MwoI	GCNNNNNNNGC	4 cut(s)	437, 452, 505, 527
NciI	CCSGG	1 cut(s)	217
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	1 cut(s)	459
NlaIV	GGNNCC	2 cut(s)	270, 529
PdmI	GAANNNNTTC	1 cut(s)	255
PfeI	GAWTC	2 cut(s)	23, 288
PfoI	TCCNGGA	1 cut(s)	104
PkrI	GCNGC	3 cut(s)	277, 280, 523
Psp6I	CCWGG	2 cut(s)	104, 399
PspGI	CCWGG	2 cut(s)	104, 399
PspN4I	GGNNCC	2 cut(s)	270, 529
PstI	CTGCAG	1 cut(s)	277
PsuI	RGATCY	1 cut(s)	268
PvuII	CAGCTG	1 cut(s)	524
RsaI	GTAC	2 cut(s)	98, 381
RsaNI	GTAC	2 cut(s)	97, 380
SaqAI	TTAA	3 cut(s)	332, 468, 504
SatI	GCNGC	3 cut(s)	276, 279, 522
Sau3AI	GATC	1 cut(s)	268
ScrFI	CCNGG	3 cut(s)	106, 217, 401
SetI	ASST	7 cut(s)	204, 283, 306, 433, 526, 555, 567
SfcI	CTRYAG	2 cut(s)	58, 273
Sse9I	AATT	7 cut(s)	114, 124, 252, 419, 460, 500, 547
SspMI	CTAG	1 cut(s)	580
StyD4I	CCNGG	3 cut(s)	104, 215, 399
TaaI	ACNGT	1 cut(s)	178
TasI	AATT	7 cut(s)	114, 124, 252, 419, 460, 500, 547
TatI	WGTACW	1 cut(s)	379
TfiI	GAWTC	2 cut(s)	23, 288
Tru1I	TTAA	3 cut(s)	332, 468, 504
Tru9I	TTAA	3 cut(s)	332, 468, 504
TscAI	CASTG	1 cut(s)	183
TseI	GCWGC	3 cut(s)	275, 278, 521
TspDTI	ATGAA	3 cut(s)	248, 264, 324
TspGWI	ACGGA	2 cut(s)	378, 489
TspRI	CASTG	1 cut(s)	183
XagI	CCTNNNNNAGG	1 cut(s)	404
XapI	RAATTY	3 cut(s)	124, 419, 460
XcmI	CCANNNNNNNNNTGG	1 cut(s)	521
XmnI	GAANNNNTTC	1 cut(s)	255
XspI	CTAG	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.