Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001562

Physical Location & Seq

Genomic Coordinates Forward (+)

20205056 .. 20215329

Gene Structure 10274 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG182200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGTCCTGTTGGCGGACTGTCCAACCTACTCCCAAAGATCCCATTCTCGACGTCACCGAAGCCTTTCTCGCCGATCCCAGTCCCAACGAAGTCAATGTTGGAGTCCTGCCCTCTCCTATTCGTCAATTCCAGGAAGCTACGGGACTGTCCCAATCTACAACATTCAACATTATAAATTTTGTATATCCGGTTTGTTGTAAATTTGTGAGCAGAGATATACATATGGCTGGTTTTTTGCCGGCTGAGTCCTCTCATAGTGGAATCACTGGTATGTATGATGGTGGGTCCTCTAATGCTCAGGAGAGGCTGGAGGAGGGATCCTGTTGGTACTTTTACAGAAAGGAAATTGAAGAAAATTCTCCATCTAGACTAGATGGCATTGACTTGAAGAAGGAGACATATCTACGCAAGTCATACTGTACTTTTCTACAAGATTTGGGCATGAGACTTAAAGTACCCCAGGTAACAATTGCAACAGCCATAATTTTCTGTCACCGATTTTTTCTTCGACAATCACATGCAAGAAATGATAGAAGGACTATTGCAACAGTTTGTATGTTTCTTGCTGGCAAGGTTGAAGAAACTCCACGGCCACTGAAAGATGTTATCATCGTTTCTTATGAAATTATACATAAGAAGGATCCTGCAGCAGTTCAGAAGATCAAGCAAAAGGAGGTATATGAACAGCAGAAAGAACTAATTCTTAGTGGAGAGAGGGTTGTTCTTGCAACTCTTGGTTTTGATCTTAATTTACTGCATCCTTATAAACCCCTTGTTGAGGCGATAAAGAAATTTAAAGTAGCTCAAAATGCCCTTGCTCAAGTTGCATGGAATTTCGTCAATGATGGACTTCGGACATCTCTTTGCTTGCAATTTAAACCCCACCACATTGCAGCTGGTGCCATTTTCCTCGCTGCCAAATTCCTCAAAGTAAAGCTCCCGTCAGATGGCGAGAAGGTCTGGTGGCAAGAGTTTGACGTCACCCCACGCCAGTTGGAGGGTGGGTGTCCTCATTTTAATTCAGTAGGTGATGCTACAGAACAATCAACAGTAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

352

Amino Acids

39.69

Weight (kDa)

8.01

Isoelectric Point (pI)

52.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	111 - 250	1.3e-17	Cyclin, N-terminal domain
CycT2-like_C	PF21797	253 - 327	1.2e-06	Cyclin-T2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19600 AT5G45190 AT5G45190 AT5G45190
fragaria_vesca	FvH4_3g15520 FvH4_3g15520 FvH4_3g15520 FvH4_3g15521 FvH4_3g15521
malus_domestica	MD05G1222500.v1.1 MD05G1222600.v1.1 MD10G1204100.v1.1 MD10G1204200.v1.1
prunus_persica	Prupe.4G137700_v2.0.a1 Prupe.4G137800_v2.0.a1
pyrus_communis	pycom05g20520 pycom10g17480 pycom10g17490
rosa_chinensis	RchiOBHm_Chr5g0026141 RchiOBHm_Chr5g0026151
rosa_laevigata	RLG00000032906 RLG00000032907
rosa_multiflora	Rmu_co8230253.1_g000001 Rmu_co8464075.1_g000001 Rmu_sc0002806.1_g000001 Rmu_sc0002909.1_g000016 Rmu_sc0009679.1_g000001 Rmu_sc0009679.1_g000002 Rmu_sc0029141.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053050 Rroxscaffold_1G00053160 Rroxscaffold_1G00053170
rosa_rugosa	Rorug05G0091000.1
rosa_samantha	Rh2CG288400 Rh5AG183800 Rh5AG183900 Rh5AG184000 Rh5BG180600 Rh5BG180700 Rh5BG180800 Rh5CG199600 Rh5CG199700 Rh5CG199800 Rh5CG201400 Rh5DG182200 Rh5DG182300 Rh5DG182400
rosa_wichuraiana	Rw5G016640 Rw5G016650 Rw5G016810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	173, 765
AatII	GACGTC	2 cut(s)	54, 981
AccB1I	GGYRCC	1 cut(s)	899
AciI	CCGC	1 cut(s)	13
AclWI	GGATC	6 cut(s)	32, 68, 312, 325, 635, 648
AcoI	YGGCCR	1 cut(s)	590
AcsI	RAATTY	6 cut(s)	175, 200, 355, 791, 832, 920
AcyI	GRCGYC	2 cut(s)	51, 978
AfaI	GTAC	3 cut(s)	329, 421, 456
AfiI	CCNNNNNNNGG	4 cut(s)	12, 778, 947, 997
AgsI	TTSAA	4 cut(s)	166, 350, 388, 578
AjnI	CCWGG	2 cut(s)	129, 459
AjuI	GAANNNNNNNTTGG	2 cut(s)	81, 113
AluBI	AGCT	4 cut(s)	137, 803, 896, 937
AluI	AGCT	4 cut(s)	137, 803, 896, 937
Alw26I	GTCTC	2 cut(s)	389, 439
AlwI	GGATC	6 cut(s)	32, 68, 312, 325, 635, 648
AoxI	GGCC	1 cut(s)	590
ApeKI	GCWGC	3 cut(s)	647, 893, 914
ApoI	RAATTY	6 cut(s)	175, 200, 355, 791, 832, 920
Asp700I	GAANNNNTTC	2 cut(s)	63, 699
AspS9I	GGNCC	1 cut(s)	285
AsuHPI	GGTGA	4 cut(s)	46, 485, 973, 1040
AvaII	GGWCC	1 cut(s)	285
BamHI	GGATCC	2 cut(s)	317, 640
BanI	GGYRCC	1 cut(s)	899
BbvI	GCAGC	3 cut(s)	659, 901, 905
BccI	CCATC	5 cut(s)	272, 368, 370, 839, 941
BceAI	ACGGC	1 cut(s)	605
BciT130I	CCWGG	2 cut(s)	131, 461
BcoDI	GTCTC	2 cut(s)	389, 439
BfaI	CTAG	2 cut(s)	366, 371
BfmI	CTRYAG	2 cut(s)	645, 1035
BisI	GCNGC	3 cut(s)	648, 894, 915
BlsI	GCNGC	3 cut(s)	649, 895, 916
Bme1390I	CCNGG	2 cut(s)	131, 461
Bme18I	GGWCC	1 cut(s)	285
BmgT120I	GGNCC	1 cut(s)	285
BmiI	GGNNCC	4 cut(s)	286, 319, 642, 901
BmrFI	CCNGG	2 cut(s)	131, 461
BmrI	ACTGGG	1 cut(s)	72
BmsI	GCATC	2 cut(s)	766, 1021
BmuI	ACTGGG	1 cut(s)	72
BpmI	CTGGAG	1 cut(s)	329
Bpu10I	CCTNAGC	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	804
BsaHI	GRCGYC	2 cut(s)	51, 978
BsaJI	CCNNGG	2 cut(s)	459, 587
BsaWI	WCCGGW	1 cut(s)	187
BsaXI	ACNNNNNCTCC	4 cut(s)	702, 732, 989, 1019
Bsc4I	CCNNNNNNNGG	4 cut(s)	12, 778, 947, 997
Bse118I	RCCGGY	1 cut(s)	238
Bse1I	ACTGG	3 cut(s)	78, 271, 991
Bse3DI	GCAATG	1 cut(s)	888
BseBI	CCWGG	2 cut(s)	131, 461
BseDI	CCNNGG	2 cut(s)	459, 587
BseGI	GGATG	1 cut(s)	757
BseLI	CCNNNNNNNGG	4 cut(s)	12, 778, 947, 997
BseMI	GCAATG	1 cut(s)	888
BseMII	CTCAG	2 cut(s)	234, 311
BseNI	ACTGG	3 cut(s)	78, 271, 991
BseRI	GAGGAG	1 cut(s)	326
BseXI	GCAGC	3 cut(s)	659, 901, 905
BshFI	GGCC	1 cut(s)	592
BshNI	GGYRCC	1 cut(s)	899
BsiSI	CCGG	2 cut(s)	188, 239
BslFI	GGGAC	3 cut(s)	66, 133, 156
BslI	CCNNNNNNNGG	4 cut(s)	12, 778, 947, 997
BsmAI	GTCTC	2 cut(s)	389, 439
BsmFI	GGGAC	3 cut(s)	66, 133, 156
BsnI	GGCC	1 cut(s)	592
Bsp143I	GATC	6 cut(s)	37, 73, 317, 640, 660, 742
BspACI	CCGC	1 cut(s)	13
BspANI	GGCC	1 cut(s)	592
BspCNI	CTCAG	2 cut(s)	235, 310
BspLI	GGNNCC	4 cut(s)	286, 319, 642, 901
BspMAI	CTGCAG	1 cut(s)	649
BspPI	GGATC	6 cut(s)	32, 68, 312, 325, 635, 648
BspT107I	GGYRCC	1 cut(s)	899
BsrDI	GCAATG	1 cut(s)	888
BsrFI	RCCGGY	1 cut(s)	238
BsrI	ACTGG	3 cut(s)	78, 271, 991
BssAI	RCCGGY	1 cut(s)	238
BssECI	CCNNGG	2 cut(s)	459, 587
BssMI	GATC	6 cut(s)	37, 73, 317, 640, 660, 742
BssNI	GRCGYC	2 cut(s)	51, 978
Bst2UI	CCWGG	2 cut(s)	131, 461
Bst4CI	ACNGT	5 cut(s)	19, 147, 419, 550, 1051
BstACI	GRCGYC	2 cut(s)	51, 978
BstAPI	GCANNNNNTGC	1 cut(s)	899
BstC8I	GCNNGC	3 cut(s)	240, 568, 869
BstDEI	CTNAG	3 cut(s)	243, 297, 704
BstDSI	CCRYGG	1 cut(s)	587
BstENI	CCTNNNNNAGG	1 cut(s)	776
BstF5I	GGATG	1 cut(s)	757
BstKTI	GATC	6 cut(s)	40, 76, 320, 643, 663, 745
BstMAI	GTCTC	2 cut(s)	389, 439
BstMBI	GATC	6 cut(s)	37, 73, 317, 640, 660, 742
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 809, 824, 899
BstNI	CCWGG	2 cut(s)	131, 461
BstNSI	RCATGY	1 cut(s)	521
BstSCI	CCNGG	2 cut(s)	129, 459
BstSFI	CTRYAG	2 cut(s)	645, 1035
BstV1I	GCAGC	3 cut(s)	659, 901, 905
BstX2I	RGATCY	3 cut(s)	37, 317, 640
BstYI	RGATCY	3 cut(s)	37, 317, 640
BsuRI	GGCC	1 cut(s)	592
BtgI	CCRYGG	1 cut(s)	587
BtsCI	GGATG	1 cut(s)	757
BtsIMutI	CAGTG	2 cut(s)	264, 593
Cac8I	GCNNGC	3 cut(s)	240, 568, 869
Cfr10I	RCCGGY	1 cut(s)	238
Cfr13I	GGNCC	1 cut(s)	285
Csp6I	GTAC	3 cut(s)	328, 420, 455
CspCI	CAANNNNNGTGG	2 cut(s)	975, 1010
CviAII	CATG	3 cut(s)	442, 518, 828
CviQI	GTAC	3 cut(s)	328, 420, 455
DdeI	CTNAG	3 cut(s)	243, 297, 704
DpnI	GATC	6 cut(s)	39, 75, 319, 642, 662, 744
DpnII	GATC	6 cut(s)	37, 73, 317, 640, 660, 742
DraI	TTTAAA	2 cut(s)	796, 877
EaeI	YGGCCR	1 cut(s)	590
EciI	GGCGGA	1 cut(s)	28
Eco47I	GGWCC	1 cut(s)	285
EcoNI	CCTNNNNNAGG	1 cut(s)	776
EcoO109I	RGGNCCY	1 cut(s)	285
EcoRII	CCWGG	2 cut(s)	129, 459
FaeI	CATG	3 cut(s)	445, 521, 831
FaqI	GGGAC	3 cut(s)	66, 133, 156
FatI	CATG	3 cut(s)	441, 517, 827
FauNDI	CATATG	1 cut(s)	222
Fnu4HI	GCNGC	3 cut(s)	648, 894, 915
FokI	GGATG	1 cut(s)	744
Fsp4HI	GCNGC	3 cut(s)	648, 894, 915
FspBI	CTAG	2 cut(s)	366, 371
GluI	GCNGC	3 cut(s)	648, 894, 915
GsuI	CTGGAG	1 cut(s)	329
HaeIII	GGCC	1 cut(s)	592
HapII	CCGG	2 cut(s)	188, 239
Hin1I	GRCGYC	2 cut(s)	51, 978
Hin1II	CATG	3 cut(s)	445, 521, 831
HinfI	GANTC	3 cut(s)	102, 245, 261
HpaII	CCGG	2 cut(s)	188, 239
HphI	GGTGA	4 cut(s)	46, 485, 973, 1040
Hpy188I	TCNGA	3 cut(s)	657, 855, 946
Hpy188III	TCNNGA	3 cut(s)	47, 299, 366
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	4 cut(s)	385, 528, 631, 949
HpyCH4III	ACNGT	5 cut(s)	19, 147, 419, 550, 1051
HpyCH4IV	ACGT	2 cut(s)	51, 978
HpyCH4V	TGCA	9 cut(s)	473, 521, 545, 647, 728, 757, 827, 871, 893
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 809, 824, 899
HpyF3I	CTNAG	3 cut(s)	243, 297, 704
HpySE526I	ACGT	2 cut(s)	51, 978
Hsp92I	GRCGYC	2 cut(s)	51, 978
Hsp92II	CATG	3 cut(s)	445, 521, 831
KroI	GCCGGC	1 cut(s)	238
KroNI	GCCGGC	1 cut(s)	240
Kzo9I	GATC	6 cut(s)	37, 73, 317, 640, 660, 742
LmnI	GCTCC	1 cut(s)	942
Lsp1109I	GCAGC	3 cut(s)	659, 901, 905
LweI	GCATC	2 cut(s)	766, 1021
MaeI	CTAG	2 cut(s)	366, 371
MaeII	ACGT	2 cut(s)	51, 978
MaeIII	GTNAC	4 cut(s)	52, 463, 491, 979
MalI	GATC	6 cut(s)	39, 75, 319, 642, 662, 744
MboI	GATC	6 cut(s)	37, 73, 317, 640, 660, 742
MboII	GAAGA	5 cut(s)	362, 400, 497, 590, 670
MfeI	CAATTG	1 cut(s)	468
MflI	RGATCY	3 cut(s)	37, 317, 640
MlyI	GAGTC	2 cut(s)	111, 254
MmeI	TCCRAC	3 cut(s)	46, 79, 975
MroNI	GCCGGC	1 cut(s)	238
MroXI	GAANNNNTTC	2 cut(s)	63, 699
MseI	TTAA	5 cut(s)	450, 747, 795, 876, 1017
MslI	CAYNNNNRTG	1 cut(s)	269
MspA1I	CMGCKG	1 cut(s)	896
MspI	CCGG	2 cut(s)	188, 239
MspR9I	CCNGG	2 cut(s)	131, 461
MunI	CAATTG	1 cut(s)	468
MvaI	CCWGG	2 cut(s)	131, 461
MwoI	GCNNNNNNNGC	4 cut(s)	68, 809, 824, 899
NaeI	GCCGGC	1 cut(s)	240
NdeI	CATATG	1 cut(s)	222
NdeII	GATC	6 cut(s)	37, 73, 317, 640, 660, 742
NgoMIV	GCCGGC	1 cut(s)	238
NlaIII	CATG	3 cut(s)	445, 521, 831
NlaIV	GGNNCC	4 cut(s)	286, 319, 642, 901
NmuCI	GTSAC	3 cut(s)	52, 491, 979
NspI	RCATGY	1 cut(s)	521
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PdiI	GCCGGC	1 cut(s)	240
PdmI	GAANNNNTTC	2 cut(s)	63, 699
PfeI	GAWTC	1 cut(s)	261
PfoI	TCCNGGA	1 cut(s)	129
PkrI	GCNGC	3 cut(s)	649, 895, 916
PleI	GAGTC	2 cut(s)	110, 253
PpsI	GAGTC	2 cut(s)	110, 253
PpuMI	RGGWCCY	1 cut(s)	285
PsiI	TTATAA	2 cut(s)	173, 765
Psp5II	RGGWCCY	1 cut(s)	285
Psp6I	CCWGG	2 cut(s)	129, 459
PspGI	CCWGG	2 cut(s)	129, 459
PspN4I	GGNNCC	4 cut(s)	286, 319, 642, 901
PspPI	GGNCC	1 cut(s)	285
PspPPI	RGGWCCY	1 cut(s)	285
PstI	CTGCAG	1 cut(s)	649
PsuI	RGATCY	3 cut(s)	37, 317, 640
PvuII	CAGCTG	1 cut(s)	896
RsaI	GTAC	3 cut(s)	329, 421, 456
RsaNI	GTAC	3 cut(s)	328, 420, 455
RseI	CAYNNNNRTG	1 cut(s)	269
SaqAI	TTAA	5 cut(s)	450, 747, 795, 876, 1017
SatI	GCNGC	3 cut(s)	648, 894, 915
Sau3AI	GATC	6 cut(s)	37, 73, 317, 640, 660, 742
Sau96I	GGNCC	1 cut(s)	285
SchI	GAGTC	2 cut(s)	111, 254
ScrFI	CCNGG	2 cut(s)	131, 461
SfaNI	GCATC	2 cut(s)	766, 1021
SfcI	CTRYAG	2 cut(s)	645, 1035
SinI	GGWCC	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	819
SmoI	CTYRAG	1 cut(s)	819
SsiI	CCGC	1 cut(s)	13
SspMI	CTAG	2 cut(s)	366, 371
StyD4I	CCNGG	2 cut(s)	129, 459
TaaI	ACNGT	5 cut(s)	19, 147, 419, 550, 1051
TaiI	ACGT	2 cut(s)	54, 981
TaqI	TCGA	2 cut(s)	48, 508
TatI	WGTACW	1 cut(s)	419
TfiI	GAWTC	1 cut(s)	261
Tru1I	TTAA	5 cut(s)	450, 747, 795, 876, 1017
Tru9I	TTAA	5 cut(s)	450, 747, 795, 876, 1017
TscAI	CASTG	2 cut(s)	271, 600
TseFI	GTSAC	3 cut(s)	52, 491, 979
TseI	GCWGC	3 cut(s)	647, 893, 914
Tsp45I	GTSAC	3 cut(s)	52, 491, 979
TspDTI	ATGAA	2 cut(s)	636, 696
TspRI	CASTG	2 cut(s)	271, 600
VpaK11BI	GGWCC	1 cut(s)	285
XagI	CCTNNNNNAGG	1 cut(s)	776
XapI	RAATTY	6 cut(s)	175, 200, 355, 791, 832, 920
XbaI	TCTAGA	1 cut(s)	365
XceI	RCATGY	1 cut(s)	521
XcmI	CCANNNNNNNNNTGG	2 cut(s)	893, 998
XmnI	GAANNNNTTC	2 cut(s)	63, 699
XspI	CTAG	2 cut(s)	366, 371
ZraI	GACGTC	2 cut(s)	52, 979

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.