Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001562

Physical Location & Seq

Genomic Coordinates Reverse (-)

73870153 .. 73873622

Gene Structure 3470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00053050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGTTGGAGCTGTATGAACAAAATAGATTTCCATCTTCCGACGATGTTGAAGGAACTGTAGCAACTGCTACGAAGACTAAATCCAGGATGGAGCACCAAGACCTGGATCATGGCTCGTCAGTTAAAATTCCGGAGGCAACAAGTTACAGTCATTTGCAGGCTGGAGGTACAAGATCTGGAACCTCAAGGCTGACATCTAGGCCTGCATCTGAGCAGTCATATGTCGAGAATGATTACCCCGCTAGAACTTCCCAGAGTCAAAATAATGACGACAGAAGTGCTGGAATGACAGGTTCTTTGGATCAAAATATGGAAGTCGAAGACAATCACCACCCCACAGTTGAGGAAGCTCAAAATGTATCAAGGTTTGTGTCCGAGGGACGTAGTGAAGAAGGTCAAGAAAGAGAGAGTAATGACAGGAAGGGTGAAATAAGGGAAGGAGGGGACCAACATTTTGGCCGAAATCTGGACAATTCACAAAGTGCCCTTGGTCGATCACCTCAAGAAGCTATTAAGAAAATCGACAAGGACAAAGTAAGGGCAGCATTGGAGAAACGAAGGAAAGCCACTGCTGATATGACCAGGAAAACAGATTTGCTGGATGAGGATGATCTGATTGAGAGGGAGCTGGAAGATGGTATTGAACTGGCTGGTGGGAGTGAGAAAAACAAACTGGACAGAAGGCAAAGCTGGTCCAAGTCCTCACATAGACAAGAACATGAGAGCCTTCATCAGGGAAAACATCGAGAGGGTGTTGGAGATGGTGGACCACGTTTTTGTACTATTGAAGAAGGTGAGGCATCAGCCTTTGAAGCTGGACATGAATTTCCGTCACCCAAATCAAGCAGTCGCAAGAGAAAGGAAGGAAGCCCCCTAGAAATTGTTGCAGAAAAGAAACAGAGACAGGATTATCGCCATAATCACTTTGACCATACTGAAAATCATAACAGGGTAGGCAGAGTTGGCCACACTGAAAGGGATAATAAAAGGCCTGTACATGGTGTCTACTATCCTGAGAGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

341

Amino Acids

38.55

Weight (kDa)

5.89

Isoelectric Point (pI)

63.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19600 AT5G45190 AT5G45190 AT5G45190
fragaria_vesca	FvH4_3g15520 FvH4_3g15520 FvH4_3g15520 FvH4_3g15521 FvH4_3g15521
malus_domestica	MD05G1222500.v1.1 MD05G1222600.v1.1 MD10G1204100.v1.1 MD10G1204200.v1.1
prunus_persica	Prupe.4G137700_v2.0.a1 Prupe.4G137800_v2.0.a1
pyrus_communis	pycom05g20520 pycom10g17480 pycom10g17490
rosa_chinensis	RchiOBHm_Chr5g0026141 RchiOBHm_Chr5g0026151
rosa_laevigata	RLG00000032906 RLG00000032907
rosa_multiflora	Rmu_co8230253.1_g000001 Rmu_co8464075.1_g000001 Rmu_sc0002806.1_g000001 Rmu_sc0002909.1_g000016 Rmu_sc0009679.1_g000001 Rmu_sc0009679.1_g000002 Rmu_sc0029141.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053050 Rroxscaffold_1G00053160 Rroxscaffold_1G00053170
rosa_rugosa	Rorug05G0091000.1
rosa_samantha	Rh2CG288400 Rh5AG183800 Rh5AG183900 Rh5AG184000 Rh5BG180600 Rh5BG180700 Rh5BG180800 Rh5CG199600 Rh5CG199700 Rh5CG199800 Rh5CG201400 Rh5DG182200 Rh5DG182300 Rh5DG182400
rosa_wichuraiana	Rw5G016640 Rw5G016650 Rw5G016810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	103
AccI	GTMKAC	1 cut(s)	1005
AccIII	TCCGGA	1 cut(s)	130
AciI	CCGC	1 cut(s)	240
AclWI	GGATC	2 cut(s)	114, 309
AcoI	YGGCCR	2 cut(s)	457, 964
AcsI	RAATTY	2 cut(s)	126, 824
AdeI	CACNNNGTG	1 cut(s)	482
AfaI	GTAC	3 cut(s)	169, 781, 996
AfiI	CCNNNNNNNGG	4 cut(s)	103, 466, 733, 998
AgsI	TTSAA	4 cut(s)	50, 644, 788, 812
AjnI	CCWGG	3 cut(s)	83, 102, 581
AluBI	AGCT	6 cut(s)	10, 350, 509, 628, 690, 815
AluI	AGCT	6 cut(s)	10, 350, 509, 628, 690, 815
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	1 cut(s)	895
AlwI	GGATC	2 cut(s)	114, 309
Aor13HI	TCCGGA	1 cut(s)	130
AoxI	GGCC	4 cut(s)	200, 457, 964, 989
ApeKI	GCWGC	1 cut(s)	542
ApoI	RAATTY	2 cut(s)	126, 824
ArsI	GACNNNNNNTTYG	6 cut(s)	280, 312, 437, 469, 759, 791
AspS9I	GGNCC	3 cut(s)	445, 693, 767
AsuHPI	GGTGA	5 cut(s)	320, 437, 489, 806, 825
AvaII	GGWCC	3 cut(s)	445, 693, 767
BaeGI	GKGCMC	1 cut(s)	487
BalI	TGGCCA	1 cut(s)	966
BbsI	GAAGAC	2 cut(s)	80, 327
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	1 cut(s)	554
BccI	CCATC	4 cut(s)	40, 82, 629, 755
BcgI	CGANNNNNNTGC	2 cut(s)	260, 294
BciT130I	CCWGG	3 cut(s)	85, 104, 583
BcoDI	GTCTC	1 cut(s)	895
BfaI	CTAG	3 cut(s)	198, 243, 875
BfmI	CTRYAG	1 cut(s)	57
BglII	AGATCT	1 cut(s)	173
BisI	GCNGC	1 cut(s)	543
BlsI	GCNGC	1 cut(s)	544
Bme1390I	CCNGG	3 cut(s)	85, 104, 583
Bme18I	GGWCC	3 cut(s)	445, 693, 767
BmgT120I	GGNCC	3 cut(s)	445, 693, 767
BmiI	GGNNCC	2 cut(s)	181, 446
BmrFI	CCNGG	3 cut(s)	85, 104, 583
BmsI	GCATC	2 cut(s)	215, 809
BpiI	GAAGAC	2 cut(s)	80, 327
BpmI	CTGGAG	1 cut(s)	183
BpuEI	CTTGAG	2 cut(s)	169, 486
BsaBI	GATNNNNATC	1 cut(s)	31
BsaJI	CCNNGG	2 cut(s)	375, 487
BsaWI	WCCGGW	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 466, 733, 998
Bse1I	ACTGG	2 cut(s)	651, 678
Bse8I	GATNNNNATC	1 cut(s)	31
BseAI	TCCGGA	1 cut(s)	130
BseBI	CCWGG	3 cut(s)	85, 104, 583
BseDI	CCNNGG	2 cut(s)	375, 487
BseGI	GGATG	3 cut(s)	93, 607, 613
BseJI	GATNNNNATC	1 cut(s)	31
BseLI	CCNNNNNNNGG	4 cut(s)	103, 466, 733, 998
BseMII	CTCAG	2 cut(s)	201, 1005
BseNI	ACTGG	2 cut(s)	651, 678
BseSI	GKGCMC	1 cut(s)	487
BseXI	GCAGC	1 cut(s)	554
BshFI	GGCC	4 cut(s)	202, 459, 966, 991
BsiHKAI	GWGCWC	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	131
BslFI	GGGAC	2 cut(s)	393, 458
BslI	CCNNNNNNNGG	4 cut(s)	103, 466, 733, 998
BsmAI	GTCTC	1 cut(s)	895
BsmFI	GGGAC	2 cut(s)	393, 458
BsnI	GGCC	4 cut(s)	202, 459, 966, 991
Bsp1286I	GDGCHC	2 cut(s)	96, 487
Bsp13I	TCCGGA	1 cut(s)	130
Bsp1407I	TGTACA	1 cut(s)	994
Bsp143I	GATC	5 cut(s)	106, 173, 301, 494, 610
BspACI	CCGC	1 cut(s)	240
BspANI	GGCC	4 cut(s)	202, 459, 966, 991
BspCNI	CTCAG	2 cut(s)	202, 1006
BspEI	TCCGGA	1 cut(s)	130
BspLI	GGNNCC	2 cut(s)	181, 446
BspPI	GGATC	2 cut(s)	114, 309
BsrGI	TGTACA	1 cut(s)	994
BsrI	ACTGG	2 cut(s)	651, 678
BssECI	CCNNGG	2 cut(s)	375, 487
BssMI	GATC	5 cut(s)	106, 173, 301, 494, 610
BssT1I	CCWWGG	1 cut(s)	487
Bst2UI	CCWGG	3 cut(s)	85, 104, 583
Bst4CI	ACNGT	3 cut(s)	58, 149, 340
BstAUI	TGTACA	1 cut(s)	994
BstC8I	GCNNGC	2 cut(s)	159, 204
BstDEI	CTNAG	2 cut(s)	210, 1014
BstENI	CCTNNNNNAGG	1 cut(s)	731
BstF5I	GGATG	3 cut(s)	93, 607, 613
BstKTI	GATC	5 cut(s)	109, 176, 304, 497, 613
BstMAI	GTCTC	1 cut(s)	895
BstMBI	GATC	5 cut(s)	106, 173, 301, 494, 610
BstMWI	GCNNNNNNNGC	2 cut(s)	812, 963
BstNI	CCWGG	3 cut(s)	85, 104, 583
BstSCI	CCNGG	3 cut(s)	83, 102, 581
BstSFI	CTRYAG	1 cut(s)	57
BstSLI	GKGCMC	1 cut(s)	487
BstV1I	GCAGC	1 cut(s)	554
BstV2I	GAAGAC	2 cut(s)	80, 327
BstX2I	RGATCY	1 cut(s)	173
BstXI	CCANNNNNNTGG	1 cut(s)	455
BstYI	RGATCY	1 cut(s)	173
BsuRI	GGCC	4 cut(s)	202, 459, 966, 991
BtsCI	GGATG	3 cut(s)	93, 607, 613
BtsI	GCAGTG	1 cut(s)	567
BtsIMutI	CAGTG	2 cut(s)	567, 969
Cac8I	GCNNGC	2 cut(s)	159, 204
Cfr13I	GGNCC	3 cut(s)	445, 693, 767
Csp6I	GTAC	3 cut(s)	168, 780, 995
CviAII	CATG	4 cut(s)	110, 719, 821, 998
CviQI	GTAC	3 cut(s)	168, 780, 995
DdeI	CTNAG	2 cut(s)	210, 1014
DpnI	GATC	5 cut(s)	108, 175, 303, 496, 612
DpnII	GATC	5 cut(s)	106, 173, 301, 494, 610
DraIII	CACNNNGTG	1 cut(s)	482
EaeI	YGGCCR	2 cut(s)	457, 964
Eco130I	CCWWGG	1 cut(s)	487
Eco147I	AGGCCT	2 cut(s)	202, 991
Eco47I	GGWCC	3 cut(s)	445, 693, 767
EcoNI	CCTNNNNNAGG	1 cut(s)	731
EcoRII	CCWGG	3 cut(s)	83, 102, 581
EcoT14I	CCWWGG	1 cut(s)	487
ErhI	CCWWGG	1 cut(s)	487
FaeI	CATG	4 cut(s)	113, 722, 824, 1001
FaqI	GGGAC	2 cut(s)	393, 458
FatI	CATG	4 cut(s)	109, 718, 820, 997
FauI	CCCGC	1 cut(s)	247
FauNDI	CATATG	1 cut(s)	220
FblI	GTMKAC	1 cut(s)	1005
Fnu4HI	GCNGC	1 cut(s)	543
FokI	GGATG	3 cut(s)	100, 614, 620
Fsp4HI	GCNGC	1 cut(s)	543
FspBI	CTAG	3 cut(s)	198, 243, 875
GluI	GCNGC	1 cut(s)	543
GsuI	CTGGAG	1 cut(s)	183
HaeIII	GGCC	4 cut(s)	202, 459, 966, 991
HapII	CCGG	1 cut(s)	131
Hin1II	CATG	4 cut(s)	113, 722, 824, 1001
HinfI	GANTC	1 cut(s)	256
HpaII	CCGG	1 cut(s)	131
HphI	GGTGA	5 cut(s)	320, 437, 489, 806, 825
Hpy166II	GTNNAC	2 cut(s)	767, 1006
Hpy188I	TCNGA	4 cut(s)	40, 211, 376, 615
Hpy188III	TCNNGA	8 cut(s)	131, 177, 226, 398, 467, 503, 746, 1013
Hpy8I	GTNNAC	2 cut(s)	767, 1006
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	9 cut(s)	44, 386, 415, 431, 552, 675, 737, 785, 857
HpyCH4III	ACNGT	3 cut(s)	58, 149, 340
HpyCH4IV	ACGT	2 cut(s)	382, 772
HpyCH4V	TGCA	3 cut(s)	157, 206, 887
HpyF10VI	GCNNNNNNNGC	2 cut(s)	812, 963
HpyF3I	CTNAG	2 cut(s)	210, 1014
HpySE526I	ACGT	2 cut(s)	382, 772
Hsp92II	CATG	4 cut(s)	113, 722, 824, 1001
Kpn2I	TCCGGA	1 cut(s)	130
Kzo9I	GATC	5 cut(s)	106, 173, 301, 494, 610
LmnI	GCTCC	3 cut(s)	7, 91, 625
Lsp1109I	GCAGC	1 cut(s)	554
LweI	GCATC	2 cut(s)	215, 809
MaeI	CTAG	3 cut(s)	198, 243, 875
MaeII	ACGT	2 cut(s)	382, 772
MaeIII	GTNAC	2 cut(s)	143, 831
MalI	GATC	5 cut(s)	108, 175, 303, 496, 612
MboI	GATC	5 cut(s)	106, 173, 301, 494, 610
MboII	GAAGA	6 cut(s)	27, 85, 332, 401, 644, 800
MflI	RGATCY	1 cut(s)	173
MhlI	GDGCHC	2 cut(s)	96, 487
MlsI	TGGCCA	1 cut(s)	966
MluCI	AATT	4 cut(s)	126, 472, 824, 879
MluNI	TGGCCA	1 cut(s)	966
MlyI	GAGTC	1 cut(s)	265
MmeI	TCCRAC	2 cut(s)	63, 736
Mox20I	TGGCCA	1 cut(s)	966
MroI	TCCGGA	1 cut(s)	130
MscI	TGGCCA	1 cut(s)	966
MseI	TTAA	2 cut(s)	123, 513
Msp20I	TGGCCA	1 cut(s)	966
MspI	CCGG	1 cut(s)	131
MspR9I	CCNGG	3 cut(s)	85, 104, 583
MvaI	CCWGG	3 cut(s)	85, 104, 583
MwoI	GCNNNNNNNGC	2 cut(s)	812, 963
NdeI	CATATG	1 cut(s)	220
NdeII	GATC	5 cut(s)	106, 173, 301, 494, 610
NlaIII	CATG	4 cut(s)	113, 722, 824, 1001
NlaIV	GGNNCC	2 cut(s)	181, 446
NmuCI	GTSAC	1 cut(s)	831
PceI	AGGCCT	2 cut(s)	202, 991
PflMI	CCANNNNNTGG	1 cut(s)	103
PfoI	TCCNGGA	1 cut(s)	83
PkrI	GCNGC	1 cut(s)	544
PleI	GAGTC	1 cut(s)	264
PpsI	GAGTC	1 cut(s)	264
Psp6I	CCWGG	3 cut(s)	83, 102, 581
PspGI	CCWGG	3 cut(s)	83, 102, 581
PspN4I	GGNNCC	2 cut(s)	181, 446
PspPI	GGNCC	3 cut(s)	445, 693, 767
PsuI	RGATCY	1 cut(s)	173
RsaI	GTAC	3 cut(s)	169, 781, 996
RsaNI	GTAC	3 cut(s)	168, 780, 995
SaqAI	TTAA	2 cut(s)	123, 513
SatI	GCNGC	1 cut(s)	543
Sau3AI	GATC	5 cut(s)	106, 173, 301, 494, 610
Sau96I	GGNCC	3 cut(s)	445, 693, 767
SchI	GAGTC	1 cut(s)	265
ScrFI	CCNGG	3 cut(s)	85, 104, 583
SduI	GDGCHC	2 cut(s)	96, 487
SfaNI	GCATC	2 cut(s)	215, 809
SfcI	CTRYAG	1 cut(s)	57
SinI	GGWCC	3 cut(s)	445, 693, 767
SmlI	CTYRAG	2 cut(s)	184, 501
SmoI	CTYRAG	2 cut(s)	184, 501
Sse9I	AATT	4 cut(s)	126, 472, 824, 879
SseBI	AGGCCT	2 cut(s)	202, 991
SsiI	CCGC	1 cut(s)	240
SspMI	CTAG	3 cut(s)	198, 243, 875
StuI	AGGCCT	2 cut(s)	202, 991
StyD4I	CCNGG	3 cut(s)	83, 102, 581
StyI	CCWWGG	1 cut(s)	487
TaaI	ACNGT	3 cut(s)	58, 149, 340
TaiI	ACGT	2 cut(s)	385, 775
TaqI	TCGA	5 cut(s)	225, 318, 493, 522, 745
TasI	AATT	4 cut(s)	126, 472, 824, 879
TatI	WGTACW	2 cut(s)	779, 994
Tru1I	TTAA	2 cut(s)	123, 513
Tru9I	TTAA	2 cut(s)	123, 513
TscAI	CASTG	2 cut(s)	574, 976
TseFI	GTSAC	1 cut(s)	831
TseI	GCWGC	1 cut(s)	542
Tsp45I	GTSAC	1 cut(s)	831
TspDTI	ATGAA	3 cut(s)	30, 719, 837
TspGWI	ACGGA	1 cut(s)	819
TspRI	CASTG	2 cut(s)	574, 976
Van91I	CCANNNNNTGG	1 cut(s)	103
VpaK11BI	GGWCC	3 cut(s)	445, 693, 767
XagI	CCTNNNNNAGG	1 cut(s)	731
XapI	RAATTY	2 cut(s)	126, 824
XmiI	GTMKAC	1 cut(s)	1005
XspI	CTAG	3 cut(s)	198, 243, 875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.