Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029141.1

Orthogroup ID

OG0001562

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1930

Gene Structure 1930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029141.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 614 bp

atgaatggtaaactgtttggtattgtacataaaagcaacagtatacaagtcaatgcacctgaaagaccccaggtaacaattgcaacagccataattttctgtcaccgattttttcttcgacaatcacatgcaagaaatgatagaaggactattgcaacagtttgtatgtttcttgctggcaaggttgaagaaactccacggccactgaaagatgttatcatcgtttcttatgaaattatacataagaaggatcctgcagcagttcagaagatcaagcaaaaggaggtatatgaacagcagaaagaactaattcttagtggagagagggttgttcttgcaactcttggttttgatcttaatttactgcatccttataaaccccttgttgaggcgataaagaaatttaaagtagctcaaaatgcccttgctcaagttgcatggaatttcgtcaatgatggacttcggacatctctttgcttgcaatttaaaccccaccacattgcagctggtgccattttcctcgctgccaaattcctcaaagtaaagctcccgtcagatggagagaaggtctggtggcaagagtttgacgtcaccccacgccagttggagggtgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

205

Amino Acids

23.22

Weight (kDa)

9.63

Isoelectric Point (pI)

31.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19600 AT5G45190 AT5G45190 AT5G45190
fragaria_vesca	FvH4_3g15520 FvH4_3g15520 FvH4_3g15520 FvH4_3g15521 FvH4_3g15521
malus_domestica	MD05G1222500.v1.1 MD05G1222600.v1.1 MD10G1204100.v1.1 MD10G1204200.v1.1
prunus_persica	Prupe.4G137700_v2.0.a1 Prupe.4G137800_v2.0.a1
pyrus_communis	pycom05g20520 pycom10g17480 pycom10g17490
rosa_chinensis	RchiOBHm_Chr5g0026141 RchiOBHm_Chr5g0026151
rosa_laevigata	RLG00000032906 RLG00000032907
rosa_multiflora	Rmu_co8230253.1_g000001 Rmu_co8464075.1_g000001 Rmu_sc0002806.1_g000001 Rmu_sc0002909.1_g000016 Rmu_sc0009679.1_g000001 Rmu_sc0009679.1_g000002 Rmu_sc0029141.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053050 Rroxscaffold_1G00053160 Rroxscaffold_1G00053170
rosa_rugosa	Rorug05G0091000.1
rosa_samantha	Rh2CG288400 Rh5AG183800 Rh5AG183900 Rh5AG184000 Rh5BG180600 Rh5BG180700 Rh5BG180800 Rh5CG199600 Rh5CG199700 Rh5CG199800 Rh5CG201400 Rh5DG182200 Rh5DG182300 Rh5DG182400
rosa_wichuraiana	Rw5G016640 Rw5G016650 Rw5G016810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	375
AatII	GACGTC	1 cut(s)	591
AccB1I	GGYRCC	1 cut(s)	509
AccI	GTMKAC	1 cut(s)	43
AclWI	GGATC	2 cut(s)	245, 258
AcoI	YGGCCR	1 cut(s)	200
AcsI	RAATTY	3 cut(s)	401, 442, 530
AcyI	GRCGYC	1 cut(s)	588
AfaI	GTAC	1 cut(s)	27
AfiI	CCNNNNNNNGG	3 cut(s)	388, 557, 607
AgsI	TTSAA	1 cut(s)	188
AjnI	CCWGG	1 cut(s)	69
AluBI	AGCT	3 cut(s)	413, 506, 547
AluI	AGCT	3 cut(s)	413, 506, 547
AlwI	GGATC	2 cut(s)	245, 258
AoxI	GGCC	1 cut(s)	200
ApeKI	GCWGC	3 cut(s)	257, 503, 524
ApoI	RAATTY	3 cut(s)	401, 442, 530
Asp700I	GAANNNNTTC	1 cut(s)	309
AsuHPI	GGTGA	2 cut(s)	95, 583
BamHI	GGATCC	1 cut(s)	250
BanI	GGYRCC	1 cut(s)	509
BbvI	GCAGC	3 cut(s)	269, 511, 515
BccI	CCATC	2 cut(s)	449, 551
BceAI	ACGGC	1 cut(s)	215
BciT130I	CCWGG	1 cut(s)	71
BfmI	CTRYAG	1 cut(s)	255
BisI	GCNGC	3 cut(s)	258, 504, 525
BlsI	GCNGC	3 cut(s)	259, 505, 526
Bme1390I	CCNGG	1 cut(s)	71
BmiI	GGNNCC	2 cut(s)	252, 511
BmrFI	CCNGG	1 cut(s)	71
BmsI	GCATC	1 cut(s)	376
BpuEI	CTTGAG	1 cut(s)	414
BsaHI	GRCGYC	1 cut(s)	588
BsaJI	CCNNGG	2 cut(s)	69, 197
BsaXI	ACNNNNNCTCC	4 cut(s)	312, 342, 552, 582
Bsc4I	CCNNNNNNNGG	3 cut(s)	388, 557, 607
Bse1I	ACTGG	1 cut(s)	601
Bse3DI	GCAATG	1 cut(s)	498
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	2 cut(s)	69, 197
BseGI	GGATG	1 cut(s)	367
BseLI	CCNNNNNNNGG	3 cut(s)	388, 557, 607
BseMI	GCAATG	1 cut(s)	498
BseNI	ACTGG	1 cut(s)	601
BseXI	GCAGC	3 cut(s)	269, 511, 515
BshFI	GGCC	1 cut(s)	202
BshNI	GGYRCC	1 cut(s)	509
BslI	CCNNNNNNNGG	3 cut(s)	388, 557, 607
BsnI	GGCC	1 cut(s)	202
Bsp1407I	TGTACA	1 cut(s)	25
Bsp143I	GATC	3 cut(s)	250, 270, 352
BspANI	GGCC	1 cut(s)	202
BspLI	GGNNCC	2 cut(s)	252, 511
BspMAI	CTGCAG	1 cut(s)	259
BspPI	GGATC	2 cut(s)	245, 258
BspT107I	GGYRCC	1 cut(s)	509
BsrDI	GCAATG	1 cut(s)	498
BsrGI	TGTACA	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	601
BssECI	CCNNGG	2 cut(s)	69, 197
BssMI	GATC	3 cut(s)	250, 270, 352
BssNAI	GTATAC	1 cut(s)	44
BssNI	GRCGYC	1 cut(s)	588
Bst1107I	GTATAC	1 cut(s)	44
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	3 cut(s)	15, 41, 160
BstACI	GRCGYC	1 cut(s)	588
BstAPI	GCANNNNNTGC	1 cut(s)	509
BstAUI	TGTACA	1 cut(s)	25
BstC8I	GCNNGC	2 cut(s)	178, 479
BstDEI	CTNAG	1 cut(s)	314
BstDSI	CCRYGG	1 cut(s)	197
BstENI	CCTNNNNNAGG	1 cut(s)	386
BstF5I	GGATG	1 cut(s)	367
BstKTI	GATC	3 cut(s)	253, 273, 355
BstMBI	GATC	3 cut(s)	250, 270, 352
BstMWI	GCNNNNNNNGC	3 cut(s)	419, 434, 509
BstNI	CCWGG	1 cut(s)	71
BstNSI	RCATGY	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	69
BstSFI	CTRYAG	1 cut(s)	255
BstV1I	GCAGC	3 cut(s)	269, 511, 515
BstX2I	RGATCY	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	250
BstZ17I	GTATAC	1 cut(s)	44
BsuRI	GGCC	1 cut(s)	202
BtgI	CCRYGG	1 cut(s)	197
BtsCI	GGATG	1 cut(s)	367
BtsIMutI	CAGTG	1 cut(s)	203
Cac8I	GCNNGC	2 cut(s)	178, 479
Csp6I	GTAC	1 cut(s)	26
CspCI	CAANNNNNGTGG	1 cut(s)	585
CviAII	CATG	2 cut(s)	128, 438
CviJI	RGCY	5 cut(s)	89, 202, 413, 506, 547
CviKI_1	RGCY	5 cut(s)	89, 202, 413, 506, 547
CviQI	GTAC	1 cut(s)	26
DdeI	CTNAG	1 cut(s)	314
DpnI	GATC	3 cut(s)	252, 272, 354
DpnII	GATC	3 cut(s)	250, 270, 352
DraI	TTTAAA	2 cut(s)	406, 487
EaeI	YGGCCR	1 cut(s)	200
EcoNI	CCTNNNNNAGG	1 cut(s)	386
EcoRII	CCWGG	1 cut(s)	69
FaeI	CATG	2 cut(s)	131, 441
FatI	CATG	2 cut(s)	127, 437
FblI	GTMKAC	1 cut(s)	43
Fnu4HI	GCNGC	3 cut(s)	258, 504, 525
FokI	GGATG	1 cut(s)	354
Fsp4HI	GCNGC	3 cut(s)	258, 504, 525
GluI	GCNGC	3 cut(s)	258, 504, 525
HaeIII	GGCC	1 cut(s)	202
Hin1I	GRCGYC	1 cut(s)	588
Hin1II	CATG	2 cut(s)	131, 441
HphI	GGTGA	2 cut(s)	95, 583
Hpy166II	GTNNAC	2 cut(s)	11, 44
Hpy188I	TCNGA	3 cut(s)	267, 465, 556
Hpy8I	GTNNAC	2 cut(s)	11, 44
HpyAV	CCTTC	3 cut(s)	138, 241, 559
HpyCH4III	ACNGT	3 cut(s)	15, 41, 160
HpyCH4IV	ACGT	1 cut(s)	588
HpyF10VI	GCNNNNNNNGC	3 cut(s)	419, 434, 509
HpyF3I	CTNAG	1 cut(s)	314
HpySE526I	ACGT	1 cut(s)	588
Hsp92I	GRCGYC	1 cut(s)	588
Hsp92II	CATG	2 cut(s)	131, 441
Kzo9I	GATC	3 cut(s)	250, 270, 352
LmnI	GCTCC	1 cut(s)	552
LpnPI	CCDG	7 cut(s)	56, 72, 83, 162, 267, 492, 556
Lsp1109I	GCAGC	3 cut(s)	269, 511, 515
LweI	GCATC	1 cut(s)	376
MaeII	ACGT	1 cut(s)	588
MaeIII	GTNAC	3 cut(s)	73, 101, 589
MalI	GATC	3 cut(s)	252, 272, 354
MboI	GATC	3 cut(s)	250, 270, 352
MboII	GAAGA	3 cut(s)	107, 200, 280
MfeI	CAATTG	1 cut(s)	78
MflI	RGATCY	1 cut(s)	250
MluCI	AATT	9 cut(s)	78, 93, 234, 309, 358, 401, 442, 482, 530
MmeI	TCCRAC	1 cut(s)	585
MnlI	CCTC	6 cut(s)	277, 318, 382, 530, 545, 601
MroXI	GAANNNNTTC	1 cut(s)	309
MseI	TTAA	3 cut(s)	357, 405, 486
MspA1I	CMGCKG	1 cut(s)	506
MspR9I	CCNGG	1 cut(s)	71
MunI	CAATTG	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	71
MwoI	GCNNNNNNNGC	3 cut(s)	419, 434, 509
NdeII	GATC	3 cut(s)	250, 270, 352
NlaIII	CATG	2 cut(s)	131, 441
NlaIV	GGNNCC	2 cut(s)	252, 511
NmuCI	GTSAC	2 cut(s)	101, 589
NspI	RCATGY	1 cut(s)	131
PdmI	GAANNNNTTC	1 cut(s)	309
PkrI	GCNGC	3 cut(s)	259, 505, 526
PsiI	TTATAA	1 cut(s)	375
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	2 cut(s)	252, 511
PstI	CTGCAG	1 cut(s)	259
PsuI	RGATCY	1 cut(s)	250
PvuII	CAGCTG	1 cut(s)	506
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
SaqAI	TTAA	3 cut(s)	357, 405, 486
SatI	GCNGC	3 cut(s)	258, 504, 525
Sau3AI	GATC	3 cut(s)	250, 270, 352
ScrFI	CCNGG	1 cut(s)	71
SetI	ASST	9 cut(s)	61, 75, 186, 288, 415, 508, 549, 570, 591
SfaNI	GCATC	1 cut(s)	376
SfcI	CTRYAG	1 cut(s)	255
SmlI	CTYRAG	1 cut(s)	429
SmoI	CTYRAG	1 cut(s)	429
Sse9I	AATT	9 cut(s)	78, 93, 234, 309, 358, 401, 442, 482, 530
StyD4I	CCNGG	1 cut(s)	69
TaaI	ACNGT	3 cut(s)	15, 41, 160
TaiI	ACGT	1 cut(s)	591
TaqI	TCGA	1 cut(s)	118
TasI	AATT	9 cut(s)	78, 93, 234, 309, 358, 401, 442, 482, 530
TatI	WGTACW	1 cut(s)	25
Tru1I	TTAA	3 cut(s)	357, 405, 486
Tru9I	TTAA	3 cut(s)	357, 405, 486
TscAI	CASTG	1 cut(s)	210
TseFI	GTSAC	2 cut(s)	101, 589
TseI	GCWGC	3 cut(s)	257, 503, 524
Tsp45I	GTSAC	2 cut(s)	101, 589
TspDTI	ATGAA	3 cut(s)	17, 246, 306
TspRI	CASTG	1 cut(s)	210
XagI	CCTNNNNNAGG	1 cut(s)	386
XapI	RAATTY	3 cut(s)	401, 442, 530
XceI	RCATGY	1 cut(s)	131
XcmI	CCANNNNNNNNNTGG	2 cut(s)	503, 608
XmiI	GTMKAC	1 cut(s)	43
XmnI	GAANNNNTTC	1 cut(s)	309
ZraI	GACGTC	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.