Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001562

Physical Location & Seq

Genomic Coordinates Forward (+)

19836819 .. 19837841

Gene Structure 1023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG180800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGTTGGAGCTATATGAACAAAATAGATTTCCATCTTCCGACGATGTTGAAGGAACTGTAGCAACTGCTACGAAGACTAAATCCAGGATGGAGCACCAAGACCTGGATCATGGCTCGTCAGTTAAAATTCCGGTCTCACATGAGGCAACAAGTAACAGTCATTTGCAGGCTGGAGGTACAAGATCTGGAACCTCAAGGCCGGCATCTAGGCCTGCATCTGAGCAGTCATATGTTGAGAATGATTACCCTGCTAGAACTTCCCAGAGTCAAAATAATGACTACAGAAGTGCTGGAATGACAGGTTCTTTGGATCAAAATATGGAAGTCGAAGACAATCACCACCCCAAAGTCGAGGAAGCTCAAAATGTATCAAGGTTTGTGTCCGAGGGACGTAGTGAAGAAGGCCAAGAAAGAGAGAGTAATGACAGGAAGGGTGAAATAAGGGAAGGAGGGGACAAACATTTTGGCCGAAATCTGGACAATACACAAAGTGCCCTTGGTCGATCACCTCAAGAAGCTATTAAGAAAATCGACAAGGACAAAGTAAGGGCAGCATTGGAGAAACGAAGGAAAGCCACTGCTGATATGACCAGGAAAACAGATTTGCTGGATGAGGATGATCTGATTGAGAGGGAGCTGGAAGATGGTATTGAACTGGCTGGTGGGAGTGAGAAAAACAAACGGGACAGAAGGCAAAGCTGGTCCAAGTCCTCACATAGACAAGAACATGAGAGCCTTCATCAGGGAAAACATCGGGAGGGTGTTGGAGATGGTGGACCACGTTTTAGTGCTATTGAAGAAGGTGAGGTATCAGCCTTTGAAGCTGGACATGAATTTCCGTCACCCAAATCAAGCAGTCGCAAGAGAAAGGAAGGAAGCCCCCTAGAAATTGTTGCAGAAAAGAAACAGAGACATGATTATCGCCATAATCACTTTGACCATACTGAAAATCATAACAGGGTAGGCAGAGTTGGCCACACTGAAAGGGATAATAAAAGGCCTGTACAGGAGAATCATGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

340

Amino Acids

38.4

Weight (kDa)

6.19

Isoelectric Point (pI)

62.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19600 AT5G45190 AT5G45190 AT5G45190
fragaria_vesca	FvH4_3g15520 FvH4_3g15520 FvH4_3g15520 FvH4_3g15521 FvH4_3g15521
malus_domestica	MD05G1222500.v1.1 MD05G1222600.v1.1 MD10G1204100.v1.1 MD10G1204200.v1.1
prunus_persica	Prupe.4G137700_v2.0.a1 Prupe.4G137800_v2.0.a1
pyrus_communis	pycom05g20520 pycom10g17480 pycom10g17490
rosa_chinensis	RchiOBHm_Chr5g0026141 RchiOBHm_Chr5g0026151
rosa_laevigata	RLG00000032906 RLG00000032907
rosa_multiflora	Rmu_co8230253.1_g000001 Rmu_co8464075.1_g000001 Rmu_sc0002806.1_g000001 Rmu_sc0002909.1_g000016 Rmu_sc0009679.1_g000001 Rmu_sc0009679.1_g000002 Rmu_sc0029141.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053050 Rroxscaffold_1G00053160 Rroxscaffold_1G00053170
rosa_rugosa	Rorug05G0091000.1
rosa_samantha	Rh2CG288400 Rh5AG183800 Rh5AG183900 Rh5AG184000 Rh5BG180600 Rh5BG180700 Rh5BG180800 Rh5CG199600 Rh5CG199700 Rh5CG199800 Rh5CG201400 Rh5DG182200 Rh5DG182300 Rh5DG182400
rosa_wichuraiana	Rw5G016640 Rw5G016650 Rw5G016810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	103
AclWI	GGATC	2 cut(s)	114, 318
AcoI	YGGCCR	2 cut(s)	466, 973
AcsI	RAATTY	2 cut(s)	126, 833
AdeI	CACNNNGTG	1 cut(s)	491
AfaI	GTAC	2 cut(s)	178, 1005
AfiI	CCNNNNNNNGG	3 cut(s)	103, 475, 742
AgsI	TTSAA	4 cut(s)	50, 653, 797, 821
AjnI	CCWGG	3 cut(s)	83, 102, 590
AluBI	AGCT	6 cut(s)	10, 359, 518, 637, 699, 824
AluI	AGCT	6 cut(s)	10, 359, 518, 637, 699, 824
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	2 cut(s)	139, 904
AlwI	GGATC	2 cut(s)	114, 318
AoxI	GGCC	6 cut(s)	197, 209, 403, 466, 973, 998
ApeKI	GCWGC	1 cut(s)	551
ApoI	RAATTY	2 cut(s)	126, 833
ArsI	GACNNNNNNTTYG	4 cut(s)	289, 321, 446, 478
AspS9I	GGNCC	2 cut(s)	702, 776
AsuHPI	GGTGA	5 cut(s)	329, 446, 498, 815, 834
AvaII	GGWCC	2 cut(s)	702, 776
BaeGI	GKGCMC	1 cut(s)	496
BalI	TGGCCA	1 cut(s)	975
BbsI	GAAGAC	2 cut(s)	80, 336
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	1 cut(s)	563
BccI	CCATC	4 cut(s)	40, 82, 638, 764
BciT130I	CCWGG	3 cut(s)	85, 104, 592
BcoDI	GTCTC	2 cut(s)	139, 904
BfaI	CTAG	3 cut(s)	207, 252, 884
BfmI	CTRYAG	2 cut(s)	57, 280
BglII	AGATCT	1 cut(s)	182
BisI	GCNGC	1 cut(s)	552
BlsI	GCNGC	1 cut(s)	553
Bme1390I	CCNGG	3 cut(s)	85, 104, 592
Bme18I	GGWCC	2 cut(s)	702, 776
BmgT120I	GGNCC	2 cut(s)	702, 776
BmiI	GGNNCC	1 cut(s)	190
BmrFI	CCNGG	3 cut(s)	85, 104, 592
BmsI	GCATC	2 cut(s)	212, 224
BpiI	GAAGAC	2 cut(s)	80, 336
BpmI	CTGGAG	1 cut(s)	192
BpuEI	CTTGAG	2 cut(s)	178, 495
BsaBI	GATNNNNATC	1 cut(s)	31
BsaI	GGTCTC	1 cut(s)	139
BsaJI	CCNNGG	2 cut(s)	384, 496
BsaWI	WCCGGW	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	3 cut(s)	103, 475, 742
Bse118I	RCCGGY	1 cut(s)	199
Bse1I	ACTGG	1 cut(s)	660
Bse8I	GATNNNNATC	1 cut(s)	31
BseBI	CCWGG	3 cut(s)	85, 104, 592
BseDI	CCNNGG	2 cut(s)	384, 496
BseGI	GGATG	3 cut(s)	93, 616, 622
BseJI	GATNNNNATC	1 cut(s)	31
BseLI	CCNNNNNNNGG	3 cut(s)	103, 475, 742
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	660
BseSI	GKGCMC	1 cut(s)	496
BseXI	GCAGC	1 cut(s)	563
BshFI	GGCC	6 cut(s)	199, 211, 405, 468, 975, 1000
BsiHKAI	GWGCWC	1 cut(s)	96
BsiSI	CCGG	2 cut(s)	131, 200
BslFI	GGGAC	3 cut(s)	402, 467, 698
BslI	CCNNNNNNNGG	3 cut(s)	103, 475, 742
BsmAI	GTCTC	2 cut(s)	139, 904
BsmFI	GGGAC	3 cut(s)	402, 467, 698
BsnI	GGCC	6 cut(s)	199, 211, 405, 468, 975, 1000
Bso31I	GGTCTC	1 cut(s)	139
Bsp1286I	GDGCHC	2 cut(s)	96, 496
Bsp1407I	TGTACA	1 cut(s)	1003
Bsp143I	GATC	5 cut(s)	106, 182, 310, 503, 619
BspANI	GGCC	6 cut(s)	199, 211, 405, 468, 975, 1000
BspCNI	CTCAG	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	190
BspPI	GGATC	2 cut(s)	114, 318
BspTNI	GGTCTC	1 cut(s)	139
BsrFI	RCCGGY	1 cut(s)	199
BsrGI	TGTACA	1 cut(s)	1003
BsrI	ACTGG	1 cut(s)	660
BssAI	RCCGGY	1 cut(s)	199
BssECI	CCNNGG	2 cut(s)	384, 496
BssMI	GATC	5 cut(s)	106, 182, 310, 503, 619
BssT1I	CCWWGG	1 cut(s)	496
Bst2UI	CCWGG	3 cut(s)	85, 104, 592
Bst4CI	ACNGT	2 cut(s)	58, 158
BstAUI	TGTACA	1 cut(s)	1003
BstC8I	GCNNGC	3 cut(s)	168, 201, 213
BstDEI	CTNAG	1 cut(s)	219
BstENI	CCTNNNNNAGG	1 cut(s)	740
BstF5I	GGATG	3 cut(s)	93, 616, 622
BstKTI	GATC	5 cut(s)	109, 185, 313, 506, 622
BstMAI	GTCTC	2 cut(s)	139, 904
BstMBI	GATC	5 cut(s)	106, 182, 310, 503, 619
BstMWI	GCNNNNNNNGC	2 cut(s)	821, 972
BstNI	CCWGG	3 cut(s)	85, 104, 592
BstSCI	CCNGG	3 cut(s)	83, 102, 590
BstSFI	CTRYAG	2 cut(s)	57, 280
BstSLI	GKGCMC	1 cut(s)	496
BstV1I	GCAGC	1 cut(s)	563
BstV2I	GAAGAC	2 cut(s)	80, 336
BstX2I	RGATCY	1 cut(s)	182
BstYI	RGATCY	1 cut(s)	182
BsuRI	GGCC	6 cut(s)	199, 211, 405, 468, 975, 1000
BtsCI	GGATG	3 cut(s)	93, 616, 622
BtsI	GCAGTG	1 cut(s)	576
BtsIMutI	CAGTG	2 cut(s)	576, 978
Cac8I	GCNNGC	3 cut(s)	168, 201, 213
Cfr10I	RCCGGY	1 cut(s)	199
Cfr13I	GGNCC	2 cut(s)	702, 776
Csp6I	GTAC	2 cut(s)	177, 1004
CviAII	CATG	6 cut(s)	110, 140, 728, 830, 914, 1016
CviQI	GTAC	2 cut(s)	177, 1004
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	5 cut(s)	108, 184, 312, 505, 621
DpnII	GATC	5 cut(s)	106, 182, 310, 503, 619
DraIII	CACNNNGTG	1 cut(s)	491
EaeI	YGGCCR	2 cut(s)	466, 973
Eco130I	CCWWGG	1 cut(s)	496
Eco147I	AGGCCT	2 cut(s)	211, 1000
Eco31I	GGTCTC	1 cut(s)	139
Eco47I	GGWCC	2 cut(s)	702, 776
EcoNI	CCTNNNNNAGG	1 cut(s)	740
EcoRII	CCWGG	3 cut(s)	83, 102, 590
EcoT14I	CCWWGG	1 cut(s)	496
ErhI	CCWWGG	1 cut(s)	496
FaeI	CATG	6 cut(s)	113, 143, 731, 833, 917, 1019
FaqI	GGGAC	3 cut(s)	402, 467, 698
FatI	CATG	6 cut(s)	109, 139, 727, 829, 913, 1015
FauNDI	CATATG	1 cut(s)	229
Fnu4HI	GCNGC	1 cut(s)	552
FokI	GGATG	3 cut(s)	100, 623, 629
Fsp4HI	GCNGC	1 cut(s)	552
FspBI	CTAG	3 cut(s)	207, 252, 884
GluI	GCNGC	1 cut(s)	552
GsuI	CTGGAG	1 cut(s)	192
HaeIII	GGCC	6 cut(s)	199, 211, 405, 468, 975, 1000
HapII	CCGG	2 cut(s)	131, 200
Hin1II	CATG	6 cut(s)	113, 143, 731, 833, 917, 1019
HinfI	GANTC	2 cut(s)	265, 1012
HpaII	CCGG	2 cut(s)	131, 200
HphI	GGTGA	5 cut(s)	329, 446, 498, 815, 834
Hpy166II	GTNNAC	1 cut(s)	776
Hpy188I	TCNGA	5 cut(s)	40, 220, 385, 624, 1022
Hpy188III	TCNNGA	4 cut(s)	186, 476, 512, 755
Hpy8I	GTNNAC	1 cut(s)	776
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	9 cut(s)	44, 395, 424, 440, 561, 684, 746, 794, 866
HpyCH4III	ACNGT	2 cut(s)	58, 158
HpyCH4IV	ACGT	2 cut(s)	391, 781
HpyCH4V	TGCA	3 cut(s)	166, 215, 896
HpyF10VI	GCNNNNNNNGC	2 cut(s)	821, 972
HpyF3I	CTNAG	1 cut(s)	219
HpySE526I	ACGT	2 cut(s)	391, 781
Hsp92II	CATG	6 cut(s)	113, 143, 731, 833, 917, 1019
KroI	GCCGGC	1 cut(s)	199
KroNI	GCCGGC	1 cut(s)	201
Kzo9I	GATC	5 cut(s)	106, 182, 310, 503, 619
LmnI	GCTCC	3 cut(s)	7, 91, 634
Lsp1109I	GCAGC	1 cut(s)	563
LweI	GCATC	2 cut(s)	212, 224
MaeI	CTAG	3 cut(s)	207, 252, 884
MaeII	ACGT	2 cut(s)	391, 781
MaeIII	GTNAC	2 cut(s)	152, 840
MalI	GATC	5 cut(s)	108, 184, 312, 505, 621
MboI	GATC	5 cut(s)	106, 182, 310, 503, 619
MboII	GAAGA	6 cut(s)	27, 85, 341, 410, 653, 809
MflI	RGATCY	1 cut(s)	182
MhlI	GDGCHC	2 cut(s)	96, 496
MlsI	TGGCCA	1 cut(s)	975
MluCI	AATT	3 cut(s)	126, 833, 888
MluNI	TGGCCA	1 cut(s)	975
MlyI	GAGTC	1 cut(s)	274
MmeI	TCCRAC	2 cut(s)	63, 745
Mox20I	TGGCCA	1 cut(s)	975
MroNI	GCCGGC	1 cut(s)	199
MscI	TGGCCA	1 cut(s)	975
MseI	TTAA	2 cut(s)	123, 522
Msp20I	TGGCCA	1 cut(s)	975
MspI	CCGG	2 cut(s)	131, 200
MspR9I	CCNGG	3 cut(s)	85, 104, 592
MvaI	CCWGG	3 cut(s)	85, 104, 592
MwoI	GCNNNNNNNGC	2 cut(s)	821, 972
NaeI	GCCGGC	1 cut(s)	201
NdeI	CATATG	1 cut(s)	229
NdeII	GATC	5 cut(s)	106, 182, 310, 503, 619
NgoMIV	GCCGGC	1 cut(s)	199
NlaIII	CATG	6 cut(s)	113, 143, 731, 833, 917, 1019
NlaIV	GGNNCC	1 cut(s)	190
NmuCI	GTSAC	1 cut(s)	840
PceI	AGGCCT	2 cut(s)	211, 1000
PdiI	GCCGGC	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	1012
PflMI	CCANNNNNTGG	1 cut(s)	103
PfoI	TCCNGGA	1 cut(s)	83
PkrI	GCNGC	1 cut(s)	553
PleI	GAGTC	1 cut(s)	273
PpsI	GAGTC	1 cut(s)	273
Psp6I	CCWGG	3 cut(s)	83, 102, 590
PspGI	CCWGG	3 cut(s)	83, 102, 590
PspN4I	GGNNCC	1 cut(s)	190
PspPI	GGNCC	2 cut(s)	702, 776
PsuI	RGATCY	1 cut(s)	182
RsaI	GTAC	2 cut(s)	178, 1005
RsaNI	GTAC	2 cut(s)	177, 1004
SaqAI	TTAA	2 cut(s)	123, 522
SatI	GCNGC	1 cut(s)	552
Sau3AI	GATC	5 cut(s)	106, 182, 310, 503, 619
Sau96I	GGNCC	2 cut(s)	702, 776
SchI	GAGTC	1 cut(s)	274
ScrFI	CCNGG	3 cut(s)	85, 104, 592
SduI	GDGCHC	2 cut(s)	96, 496
SfaNI	GCATC	2 cut(s)	212, 224
SfcI	CTRYAG	2 cut(s)	57, 280
SinI	GGWCC	2 cut(s)	702, 776
SmlI	CTYRAG	2 cut(s)	193, 510
SmoI	CTYRAG	2 cut(s)	193, 510
Sse9I	AATT	3 cut(s)	126, 833, 888
SseBI	AGGCCT	2 cut(s)	211, 1000
SspMI	CTAG	3 cut(s)	207, 252, 884
StuI	AGGCCT	2 cut(s)	211, 1000
StyD4I	CCNGG	3 cut(s)	83, 102, 590
StyI	CCWWGG	1 cut(s)	496
TaaI	ACNGT	2 cut(s)	58, 158
TaiI	ACGT	2 cut(s)	394, 784
TaqI	TCGA	4 cut(s)	327, 351, 502, 531
TasI	AATT	3 cut(s)	126, 833, 888
TatI	WGTACW	1 cut(s)	1003
TfiI	GAWTC	1 cut(s)	1012
Tru1I	TTAA	2 cut(s)	123, 522
Tru9I	TTAA	2 cut(s)	123, 522
TscAI	CASTG	2 cut(s)	583, 985
TseFI	GTSAC	1 cut(s)	840
TseI	GCWGC	1 cut(s)	551
Tsp45I	GTSAC	1 cut(s)	840
TspDTI	ATGAA	3 cut(s)	30, 728, 846
TspGWI	ACGGA	1 cut(s)	828
TspRI	CASTG	2 cut(s)	583, 985
Van91I	CCANNNNNTGG	1 cut(s)	103
VpaK11BI	GGWCC	2 cut(s)	702, 776
XagI	CCTNNNNNAGG	1 cut(s)	740
XapI	RAATTY	2 cut(s)	126, 833
XspI	CTAG	3 cut(s)	207, 252, 884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.