Rroxscaffold_1G00053160

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
74011086 .. 74016014
4929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00053160.1

Sequence Viewer

Length: 1707 bp
ATGGCTTCCTTTTTGTCTGGCGATTCTTCTAACTTCGCTGTGAGTGAAAGTAGTTGCTATAGACAGACTGAGGATAAAGAGGAAGGAGGCTCTTGGTACTTTTCCAGGAAGGAAATTGAAGAAAATTCTCCATCTAAAGTAGATGGCATAGACTTAAAGAAAGAGGCGTATCTACGAAAGTCATACTGTACTTTTCTACAAGATTTGGGGATGAGACTTAAAGTACCCCAGGTAACAATTGCAACAGCCATAATTTTCTGTCATCGGTTCTACGTTTGCCAATCGCATGCAAAGAATGATAGAAGGACCATTGCAACAGTGTGTATGTTTCTCGCCGGTAAGGTTGAAGAAACTCCCCGGCCTCTGAAAGATGTTATCCTTGTCTCCTATGAAATTATTCATAAGAAGGATCCTGCAGCCGCTCAGAGAATCAAGCAAAAGTCTATTGACTCTATTCACATATATGCAACAATCACGCAGGAGGTATATGAACAGCAGAAGGAATTGATTTTAACTGGTGAGAGGGTTGTTCTCGGAACTCTTGCTTTTGATTTCAATGTACACCACCCATATAAACCCCTGGTGGAGGCAATAAAGAAATTCAAAGTAGCTCAAAATGCCCTCGCCCAAGTTGCATGGAATTTTGTTAATGACGGACTTCGGACTTCTCTTTGCTTGCAATTTAAGCCCCACCACATTGCAGCTGGTGCCATTTTTCTTGCCGCCAAGTTCCTCAAAGTAAAGCTTCCATCGGATGGCGAGAAGGTCTGGTGGCAAGAGTTTGATGTCACCCCACGCCAGTTGGAGGAGGTTAGCAATCAAATGTTGGAGCTATATGAACAAAATAGATTTCCATCTTCCGACGATGTTGAAGGAACTGTAGCAACTGCTACGAAGTCTAAATCCAGGATGGAGCACCAAGACCTGGATCATGGCTCGTCAGTTAAAATTCCAGCCTCACATGAGGCAACAAGTAACAGTCATTTGCAGGCTGGAGGTACAAGATCTGGAACCTCAAGGCCGGCATCTAGGCCTGCATCTGAGCAGTCATATGTTGAGAATGATTACCCTGCTAGAACTTCCCAGAGTCAAAATAATGACTACAGAAGTGCTGGAATGACAGGTTCTTTGGATCAAAATATGGAAGTCGAAGACAATCACCACCCCAAAGTCGAGGAAGCTCAAAATGTATCAAGGTTTGTGTCCGAGGGACGTAGTGAAGAAGGCCAAGAAAGAGAGAGTAATGACAGGAAGGGTGAAATAAGGGAAGGAGGGGACAAACATTTTGGCCGAAATCTGGACAATTCACAAAGTGCCCTTGGTCGATCACCTCAAGAAGCTATTAAGAAAATCGACAAGGACAAAGTAAGGGCAGCATTGGAGAAACGAAGGAAAGCCACTGCTGATATGACCAGGAAAACAGATTTGCTGGATGAGGATGATCTGATTGAGAGGGAGCTGGAAGATGGTATTGAACTGGCTGGTGGGAGTGAGAAAAACAAACGGGACAGAAGGCAAAGCTGGTCCAAGTCCTCACATAGACAAGAACATGAGAGCCTTCATCAGGGAAAACATCGAGAGGGTGTTGGAGATGGTGGACCACGTTTTAGTACTATTGAAGAAGGTGAGGTATCAGCCTTTGAAGCTGGACATGAATTTCCGTCACCCAAATCAAGCAGTCGCAAGAGAAAGGAAGGAAGCCCCTAG

Protein Analysis

568

Amino Acids

63.96

Weight (kDa)

6.4

Isoelectric Point (pI)

55.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 38 - 185 3.8e-15 Cyclin, N-terminal domain
CycT2-like_C PF21797 189 - 276 2.2e-07 Cyclin-T2-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 707
AccB7I CCANNNNNTGG 2 cut(s) 755, 925
AccBSI CCGCTC 1 cut(s) 422
AciI CCGC 2 cut(s) 420, 723
AclWI GGATC 4 cut(s) 404, 417, 936, 1140
AcoI YGGCCR 1 cut(s) 1288
AcsI RAATTY 5 cut(s) 124, 599, 640, 948, 1655
AdeI CACNNNGTG 1 cut(s) 1313
AfaI GTAC 6 cut(s) 98, 190, 225, 561, 1000, 1612
AfiI CCNNNNNNNGG 6 cut(s) 586, 755, 805, 925, 1297, 1564
AgsI TTSAA 8 cut(s) 119, 347, 556, 604, 872, 1475, 1619, 1643
AjnI CCWGG 6 cut(s) 104, 228, 579, 905, 924, 1412
AluBI AGCT 9 cut(s) 611, 704, 745, 832, 1181, 1340, 1459, 1521, 1646
AluI AGCT 9 cut(s) 611, 704, 745, 832, 1181, 1340, 1459, 1521, 1646
Alw21I GWGCWC 1 cut(s) 918
Alw26I GTCTC 2 cut(s) 208, 388
AlwI GGATC 4 cut(s) 404, 417, 936, 1140
AoxI GGCC 5 cut(s) 359, 1019, 1031, 1225, 1288
ApeKI GCWGC 3 cut(s) 416, 701, 1373
ApoI RAATTY 5 cut(s) 124, 599, 640, 948, 1655
ArsI GACNNNNNNTTYG 4 cut(s) 1111, 1143, 1268, 1300
Asp700I GAANNNNTTC 1 cut(s) 396
AspS9I GGNCC 3 cut(s) 306, 1524, 1598
AsuC2I CCSGG 1 cut(s) 358
AsuHPI GGTGA 7 cut(s) 530, 781, 1151, 1268, 1320, 1637, 1656
AvaII GGWCC 3 cut(s) 306, 1524, 1598
BaeGI GKGCMC 1 cut(s) 1318
BamHI GGATCC 1 cut(s) 409
BanI GGYRCC 1 cut(s) 707
BbsI GAAGAC 1 cut(s) 1158
Bbv12I GWGCWC 1 cut(s) 918
BbvI GCAGC 3 cut(s) 428, 713, 1385
BccI CCATC 8 cut(s) 137, 139, 749, 757, 862, 904, 1460, 1586
BciT130I CCWGG 6 cut(s) 106, 230, 581, 907, 926, 1414
BcnI CCSGG 1 cut(s) 358
BcoDI GTCTC 2 cut(s) 208, 388
BfaI CTAG 3 cut(s) 1029, 1074, 1705
BfmI CTRYAG 4 cut(s) 58, 414, 879, 1102
BglII AGATCT 1 cut(s) 1004
BisI GCNGC 5 cut(s) 417, 420, 702, 723, 1374
BlsI GCNGC 5 cut(s) 418, 421, 703, 724, 1375
BmcAI AGTACT 1 cut(s) 1612
Bme1390I CCNGG 7 cut(s) 106, 230, 358, 581, 907, 926, 1414
Bme18I GGWCC 3 cut(s) 306, 1524, 1598
BmgT120I GGNCC 3 cut(s) 306, 1524, 1598
BmiI GGNNCC 3 cut(s) 411, 709, 1012
BmrFI CCNGG 7 cut(s) 106, 230, 358, 581, 907, 926, 1414
BmsI GCATC 2 cut(s) 1034, 1046
BpiI GAAGAC 1 cut(s) 1158
BpmI CTGGAG 1 cut(s) 1014
BpuEI CTTGAG 2 cut(s) 1000, 1317
BpuMI CCSGG 1 cut(s) 358
BsaBI GATNNNNATC 1 cut(s) 853
BsaJI CCNNGG 5 cut(s) 228, 356, 579, 1206, 1318
Bsc4I CCNNNNNNNGG 6 cut(s) 586, 755, 805, 925, 1297, 1564
Bse118I RCCGGY 2 cut(s) 335, 1021
Bse1I ACTGG 3 cut(s) 520, 799, 1482
Bse3DI GCAATG 2 cut(s) 309, 696
Bse8I GATNNNNATC 1 cut(s) 853
BseBI CCWGG 6 cut(s) 106, 230, 581, 907, 926, 1414
BseDI CCNNGG 5 cut(s) 228, 356, 579, 1206, 1318
BseGI GGATG 5 cut(s) 216, 760, 915, 1438, 1444
BseJI GATNNNNATC 1 cut(s) 853
BseLI CCNNNNNNNGG 6 cut(s) 586, 755, 805, 925, 1297, 1564
BseMI GCAATG 2 cut(s) 309, 696
BseMII CTCAG 3 cut(s) 60, 437, 1032
BseNI ACTGG 3 cut(s) 520, 799, 1482
BseRI GAGGAG 1 cut(s) 821
BseSI GKGCMC 1 cut(s) 1318
BseXI GCAGC 3 cut(s) 428, 713, 1385
BshFI GGCC 5 cut(s) 361, 1021, 1033, 1227, 1290
BshNI GGYRCC 1 cut(s) 707
BsiHKAI GWGCWC 1 cut(s) 918
BsiSI CCGG 3 cut(s) 336, 358, 1022
BslFI GGGAC 3 cut(s) 1224, 1289, 1520
BslI CCNNNNNNNGG 6 cut(s) 586, 755, 805, 925, 1297, 1564
BsmAI GTCTC 2 cut(s) 208, 388
BsmFI GGGAC 3 cut(s) 1224, 1289, 1520
BsnI GGCC 5 cut(s) 361, 1021, 1033, 1227, 1290
Bsp1286I GDGCHC 2 cut(s) 918, 1318
Bsp1407I TGTACA 1 cut(s) 559
Bsp143I GATC 6 cut(s) 409, 928, 1004, 1132, 1325, 1441
BspACI CCGC 2 cut(s) 420, 723
BspANI GGCC 5 cut(s) 361, 1021, 1033, 1227, 1290
BspCNI CTCAG 3 cut(s) 61, 436, 1033
BspLI GGNNCC 3 cut(s) 411, 709, 1012
BspMAI CTGCAG 1 cut(s) 418
BspPI GGATC 4 cut(s) 404, 417, 936, 1140
BspT107I GGYRCC 1 cut(s) 707
BsrBI CCGCTC 1 cut(s) 422
BsrDI GCAATG 2 cut(s) 309, 696
BsrFI RCCGGY 2 cut(s) 335, 1021
BsrGI TGTACA 1 cut(s) 559
BsrI ACTGG 3 cut(s) 520, 799, 1482
BssAI RCCGGY 2 cut(s) 335, 1021
BssECI CCNNGG 5 cut(s) 228, 356, 579, 1206, 1318
BssMI GATC 6 cut(s) 409, 928, 1004, 1132, 1325, 1441
BssT1I CCWWGG 1 cut(s) 1318
Bst2UI CCWGG 6 cut(s) 106, 230, 581, 907, 926, 1414
Bst4CI ACNGT 4 cut(s) 188, 319, 880, 980
BstAPI GCANNNNNTGC 1 cut(s) 707
BstAUI TGTACA 1 cut(s) 559
BstC8I GCNNGC 5 cut(s) 288, 677, 990, 1023, 1035
BstDEI CTNAG 3 cut(s) 69, 423, 1041
BstENI CCTNNNNNAGG 2 cut(s) 584, 1562
BstF5I GGATG 5 cut(s) 216, 760, 915, 1438, 1444
BstKTI GATC 6 cut(s) 412, 931, 1007, 1135, 1328, 1444
BstMAI GTCTC 2 cut(s) 208, 388
BstMBI GATC 6 cut(s) 409, 928, 1004, 1132, 1325, 1441
BstMWI GCNNNNNNNGC 5 cut(s) 617, 632, 685, 707, 1643
BstNI CCWGG 6 cut(s) 106, 230, 581, 907, 926, 1414
BstNSI RCATGY 1 cut(s) 290
BstSCI CCNGG 7 cut(s) 104, 228, 356, 579, 905, 924, 1412
BstSFI CTRYAG 4 cut(s) 58, 414, 879, 1102
BstSLI GKGCMC 1 cut(s) 1318
BstV1I GCAGC 3 cut(s) 428, 713, 1385
BstV2I GAAGAC 1 cut(s) 1158
BstX2I RGATCY 2 cut(s) 409, 1004
BstYI RGATCY 2 cut(s) 409, 1004
BsuRI GGCC 5 cut(s) 361, 1021, 1033, 1227, 1290
BtsCI GGATG 5 cut(s) 216, 760, 915, 1438, 1444
BtsI GCAGTG 1 cut(s) 1398
BtsIMutI CAGTG 2 cut(s) 324, 1398
Cac8I GCNNGC 5 cut(s) 288, 677, 990, 1023, 1035
Cfr10I RCCGGY 2 cut(s) 335, 1021
Cfr13I GGNCC 3 cut(s) 306, 1524, 1598
Csp6I GTAC 6 cut(s) 97, 189, 224, 560, 999, 1611
CspCI CAANNNNNGTGG 2 cut(s) 783, 818
CviAII CATG 6 cut(s) 287, 636, 932, 962, 1550, 1652
CviQI GTAC 6 cut(s) 97, 189, 224, 560, 999, 1611
DdeI CTNAG 3 cut(s) 69, 423, 1041
DpnI GATC 6 cut(s) 411, 930, 1006, 1134, 1327, 1443
DpnII GATC 6 cut(s) 409, 928, 1004, 1132, 1325, 1441
DraIII CACNNNGTG 1 cut(s) 1313
EaeI YGGCCR 1 cut(s) 1288
Eco130I CCWWGG 1 cut(s) 1318
Eco147I AGGCCT 1 cut(s) 1033
Eco47I GGWCC 3 cut(s) 306, 1524, 1598
EcoNI CCTNNNNNAGG 2 cut(s) 584, 1562
EcoRII CCWGG 6 cut(s) 104, 228, 579, 905, 924, 1412
EcoT14I CCWWGG 1 cut(s) 1318
ErhI CCWWGG 1 cut(s) 1318
FaeI CATG 6 cut(s) 290, 639, 935, 965, 1553, 1655
FalI AAGNNNNNCTT 2 cut(s) 729, 761
FaqI GGGAC 3 cut(s) 1224, 1289, 1520
FatI CATG 6 cut(s) 286, 635, 931, 961, 1549, 1651
FauNDI CATATG 1 cut(s) 1051
Fnu4HI GCNGC 5 cut(s) 417, 420, 702, 723, 1374
FokI GGATG 5 cut(s) 223, 767, 922, 1445, 1451
Fsp4HI GCNGC 5 cut(s) 417, 420, 702, 723, 1374
FspBI CTAG 3 cut(s) 1029, 1074, 1705
GluI GCNGC 5 cut(s) 417, 420, 702, 723, 1374
GsuI CTGGAG 1 cut(s) 1014
HaeIII GGCC 5 cut(s) 361, 1021, 1033, 1227, 1290
HapII CCGG 3 cut(s) 336, 358, 1022
Hin1II CATG 6 cut(s) 290, 639, 935, 965, 1553, 1655
HindIII AAGCTT 1 cut(s) 743
HinfI GANTC 4 cut(s) 23, 429, 449, 1087
HpaII CCGG 3 cut(s) 336, 358, 1022
HphI GGTGA 7 cut(s) 530, 781, 1151, 1268, 1320, 1637, 1656
Hpy166II GTNNAC 2 cut(s) 562, 1598
Hpy188I TCNGA 9 cut(s) 366, 426, 536, 663, 754, 862, 1042, 1207, 1446
Hpy188III TCNNGA 4 cut(s) 1008, 1298, 1334, 1577
Hpy8I GTNNAC 2 cut(s) 562, 1598
Hpy99I CGWCG 1 cut(s) 866
HpyCH4III ACNGT 4 cut(s) 188, 319, 880, 980
HpyCH4IV ACGT 3 cut(s) 273, 1213, 1603
HpyF10VI GCNNNNNNNGC 5 cut(s) 617, 632, 685, 707, 1643
HpyF3I CTNAG 3 cut(s) 69, 423, 1041
HpySE526I ACGT 3 cut(s) 273, 1213, 1603
Hsp92II CATG 6 cut(s) 290, 639, 935, 965, 1553, 1655
KroI GCCGGC 1 cut(s) 1021
KroNI GCCGGC 1 cut(s) 1023
Kzo9I GATC 6 cut(s) 409, 928, 1004, 1132, 1325, 1441
LmnI GCTCC 3 cut(s) 829, 913, 1456
Lsp1109I GCAGC 3 cut(s) 428, 713, 1385
LweI GCATC 2 cut(s) 1034, 1046
MaeI CTAG 3 cut(s) 1029, 1074, 1705
MaeII ACGT 3 cut(s) 273, 1213, 1603
MaeIII GTNAC 4 cut(s) 232, 787, 974, 1662
MalI GATC 6 cut(s) 411, 930, 1006, 1134, 1327, 1443
MbiI CCGCTC 1 cut(s) 422
MboI GATC 6 cut(s) 409, 928, 1004, 1132, 1325, 1441
MboII GAAGA 8 cut(s) 18, 131, 359, 849, 1163, 1232, 1475, 1631
MfeI CAATTG 1 cut(s) 237
MflI RGATCY 2 cut(s) 409, 1004
MhlI GDGCHC 2 cut(s) 918, 1318
MlyI GAGTC 2 cut(s) 443, 1096
MmeI TCCRAC 4 cut(s) 783, 807, 885, 1567
MroNI GCCGGC 1 cut(s) 1021
MroXI GAANNNNTTC 1 cut(s) 396
MseI TTAA 7 cut(s) 155, 219, 512, 648, 684, 945, 1344
MslI CAYNNNNRTG 1 cut(s) 462
MspA1I CMGCKG 1 cut(s) 704
MspI CCGG 3 cut(s) 336, 358, 1022
MspR9I CCNGG 7 cut(s) 106, 230, 358, 581, 907, 926, 1414
MunI CAATTG 1 cut(s) 237
MvaI CCWGG 6 cut(s) 106, 230, 581, 907, 926, 1414
MwoI GCNNNNNNNGC 5 cut(s) 617, 632, 685, 707, 1643
NaeI GCCGGC 1 cut(s) 1023
NciI CCSGG 1 cut(s) 358
NdeI CATATG 1 cut(s) 1051
NdeII GATC 6 cut(s) 409, 928, 1004, 1132, 1325, 1441
NgoMIV GCCGGC 1 cut(s) 1021
NlaIII CATG 6 cut(s) 290, 639, 935, 965, 1553, 1655
NlaIV GGNNCC 3 cut(s) 411, 709, 1012
NmuCI GTSAC 2 cut(s) 787, 1662
NspI RCATGY 1 cut(s) 290
PaeI GCATGC 1 cut(s) 290
PceI AGGCCT 1 cut(s) 1033
PdiI GCCGGC 1 cut(s) 1023
PdmI GAANNNNTTC 1 cut(s) 396
PfeI GAWTC 2 cut(s) 23, 429
PflMI CCANNNNNTGG 2 cut(s) 755, 925
PfoI TCCNGGA 2 cut(s) 104, 905
PkrI GCNGC 5 cut(s) 418, 421, 703, 724, 1375
PleI GAGTC 2 cut(s) 443, 1095
PpsI GAGTC 2 cut(s) 443, 1095
Psp6I CCWGG 6 cut(s) 104, 228, 579, 905, 924, 1412
PspGI CCWGG 6 cut(s) 104, 228, 579, 905, 924, 1412
PspN4I GGNNCC 3 cut(s) 411, 709, 1012
PspPI GGNCC 3 cut(s) 306, 1524, 1598
PstI CTGCAG 1 cut(s) 418
PsuI RGATCY 2 cut(s) 409, 1004
PvuII CAGCTG 1 cut(s) 704
RsaI GTAC 6 cut(s) 98, 190, 225, 561, 1000, 1612
RsaNI GTAC 6 cut(s) 97, 189, 224, 560, 999, 1611
RseI CAYNNNNRTG 1 cut(s) 462
SaqAI TTAA 7 cut(s) 155, 219, 512, 648, 684, 945, 1344
SatI GCNGC 5 cut(s) 417, 420, 702, 723, 1374
Sau3AI GATC 6 cut(s) 409, 928, 1004, 1132, 1325, 1441
Sau96I GGNCC 3 cut(s) 306, 1524, 1598
ScaI AGTACT 1 cut(s) 1612
SchI GAGTC 2 cut(s) 443, 1096
ScrFI CCNGG 7 cut(s) 106, 230, 358, 581, 907, 926, 1414
SduI GDGCHC 2 cut(s) 918, 1318
SfaNI GCATC 2 cut(s) 1034, 1046
SfcI CTRYAG 4 cut(s) 58, 414, 879, 1102
SinI GGWCC 3 cut(s) 306, 1524, 1598
SmiMI CAYNNNNRTG 1 cut(s) 462
SmlI CTYRAG 2 cut(s) 1015, 1332
SmoI CTYRAG 2 cut(s) 1015, 1332
SphI GCATGC 1 cut(s) 290
SseBI AGGCCT 1 cut(s) 1033
SsiI CCGC 2 cut(s) 420, 723
SspMI CTAG 3 cut(s) 1029, 1074, 1705
StuI AGGCCT 1 cut(s) 1033
StyD4I CCNGG 7 cut(s) 104, 228, 356, 579, 905, 924, 1412
StyI CCWWGG 1 cut(s) 1318
TaaI ACNGT 4 cut(s) 188, 319, 880, 980
TaiI ACGT 3 cut(s) 276, 1216, 1606
TaqI TCGA 5 cut(s) 1149, 1173, 1324, 1353, 1576
TatI WGTACW 3 cut(s) 188, 559, 1610
TauI GCSGC 2 cut(s) 422, 725
TfiI GAWTC 2 cut(s) 23, 429
Tru1I TTAA 7 cut(s) 155, 219, 512, 648, 684, 945, 1344
Tru9I TTAA 7 cut(s) 155, 219, 512, 648, 684, 945, 1344
TscAI CASTG 2 cut(s) 324, 1405
TseFI GTSAC 2 cut(s) 787, 1662
TseI GCWGC 3 cut(s) 416, 701, 1373
Tsp45I GTSAC 2 cut(s) 787, 1662
TspDTI ATGAA 6 cut(s) 389, 405, 504, 852, 1550, 1668
TspGWI ACGGA 2 cut(s) 669, 1650
TspRI CASTG 2 cut(s) 324, 1405
Van91I CCANNNNNTGG 2 cut(s) 755, 925
VpaK11BI GGWCC 3 cut(s) 306, 1524, 1598
XagI CCTNNNNNAGG 2 cut(s) 584, 1562
XapI RAATTY 5 cut(s) 124, 599, 640, 948, 1655
XceI RCATGY 1 cut(s) 290
XcmI CCANNNNNNNNNTGG 1 cut(s) 701
XmnI GAANNNNTTC 1 cut(s) 396
XspI CTAG 3 cut(s) 1029, 1074, 1705
ZrmI AGTACT 1 cut(s) 1612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.