AT5G45190

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001562
Physical Location & Seq
Reverse (-)
18277080 .. 18281909
4830 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G45190.1

Sequence Viewer

Length: 1740 bp
ATGGCTGGAGTACTAGCTGGGGAATGTTCTTACAGTGAGAGTGGAGTTTCATCACACTCAAGGAATTCCCATGAAAAGCAAGAAGAGGTTTCCCGCTGGTATTTTGGAAGAAAAGAAATAGAAGAGAATTCACCGTCAAGGTTGGATGGTATTGACTTAAAGAAGGAAACATACCTCCGCAAATCCTACTGTACATTTTTGCAGGACTTGGGCATGAGATTGAAAGTTCCCCAGGTTACAATAGCTACAGCGATAATCTTCTGTCATCGATTCTTCTTTCGCCAATCACATGCAAAGAATGACAGAAGGACCATTGCAACTGTATGCATGTTCCTTGCTGGAAAGGTTGAGGAAACTCCACGGCCCTTGAAAGATGTTATTTTTGTCTCCTATGAGATTATAAACAAGAAGGATCCTGGTGCTTCCCAGAAAATCAAGCAAAAGGAAGTATATGAGCAACAAAAAGAGCTTATATTAAACGGAGAAAAAATTGTTCTTTCCACTCTAGGCTTTGACCTCAATGTTTATCATCCTTATAAACCCCTGGTAGAAGCAATAAAGAAATTTAAGGTTGCACAGAATGCACTTGCCCAAGTTGCATGGAATTTTGTTAATGATGGTCTACGGACATCTCTCTGCCTGCAATTTAAGCCTCATCATATTGCGGCTGGTGCAATATTTCTTGCGGCCAAGTTCCTTAAAGTGAAGTTACCATCAGATGGAGAGAAGGTTTGGTGGCAAGAATTTGATGTCACACCCAGACAACTGGAGGATGTTAGCAACCAAATGCTTGAGCTTTATGAGCAAAATCGTGTCCCTGCATCTCAAGGAAGTGAAGTCGAGAGTAGTGTAGGTGGAGGGTCAGCTCAGCGACCAGGCTCCAGAAATGCGGTTTCAACCGATGAGCATGTTGGTTCTAGGCAAACGTCATCAGTACGTTCAACCCATGAACAATCAAATTCTGATAATCATGGGGGTTCATCCAAAGGAGTATTGAATCAGAACAATGAGAATGGGGGTGGTGAGGCAGCTAATGTCAGTGTCGATAACAAAGAGGAGATAGAGAGAGAAACAAAAGAAAGCAGCCTACATCTTGAAAGCCATCCAGCCCATAAGGACAATGTGAGAGAAGCCCCCCATAACTCTAGACCTTTAGTTGAGGGACCTGGGAAAGACAACTCAGAAAGAGAGGGTGGAGAGCTACAAGATGATGGTGCTGTTCATAAATCTCGAAATGTTGATGTGGGTGATGCCCTAATCAGCCAATCGCCAAAAGATTTGAAATTGCTTCGAGATAAGGTGAAGGCTAAACGAGAGAAAGCTAAGAAGTTGCTAGGTGAAAGAACGAGGAAAAAGGATTTGATGGATGAGGATGATTTGATTGAAAGAGAACTGGAAGATGTGCAACTAGCTGTTGAGGATGAAAAGACGAAGGAAAGGAAAGTACAGAGCAGGCCAAAGGCGGAGAACTCTGATCTCATGGGTACAGAACATGGTGAGATTTTAGATGTTAAAGGAGAAGTCAAAAATACAGAGGAAGGTGAAATGGTAAACAACAATGTGTCCCCGATGATGCATAGCAGAAAGAGAAAAATGGGAAGCCCTCCTGAAAAGCAGTCAGAAGGAAAGAGACGCCACAATAGTGAGAATGGGGAAGAAAGCCATAAGACGAGCAGAGGTAGTAGCCATCATGGTGATAGAGAGCACAGAAGACACTCACAAGAGAATAACCATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000079 GO:0000307 GO:0000902 GO:0000904 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010026 GO:0010090 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016043 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030154 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051704 GO:0051707 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071840 GO:0071900 GO:0071902 GO:0080090 GO:0090558 GO:0090626 GO:0098772 GO:0099402 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko05202 map05202
Pfam Domains
Protein Families
Cyclin_N

Protein Analysis

579

Amino Acids

65.19

Weight (kDa)

6.8

Isoelectric Point (pI)

54.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 41 - 174 8.3e-17 Cyclin, N-terminal domain
CycT2-like_C PF21797 177 - 264 5.2e-07 Cyclin-T2-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 401, 537
AccB7I CCANNNNNTGG 1 cut(s) 719
AccI GTMKAC 1 cut(s) 622
AciI CCGC 6 cut(s) 94, 178, 665, 686, 890, 1463
AclWI GGATC 2 cut(s) 407, 420
AcoI YGGCCR 1 cut(s) 687
AcsI RAATTY 6 cut(s) 64, 127, 563, 604, 743, 958
AcyI GRCGYC 1 cut(s) 1633
AfaI GTAC 5 cut(s) 12, 193, 936, 1446, 1486
AfiI CCNNNNNNNGG 1 cut(s) 719
AgsI TTSAA 8 cut(s) 223, 370, 897, 942, 997, 1097, 1282, 1385
AjnI CCWGG 5 cut(s) 231, 415, 543, 874, 1165
AleI CACNNNNGTG 1 cut(s) 1641
AluBI AGCT 9 cut(s) 17, 245, 469, 796, 866, 1031, 1201, 1322, 1412
AluI AGCT 9 cut(s) 17, 245, 469, 796, 866, 1031, 1201, 1322, 1412
Alw21I GWGCWC 1 cut(s) 1707
Alw26I GTCTC 2 cut(s) 391, 1624
AlwI GGATC 2 cut(s) 407, 420
AoxI GGCC 3 cut(s) 362, 687, 1454
ApeKI GCWGC 2 cut(s) 1028, 1083
ApoI RAATTY 6 cut(s) 64, 127, 563, 604, 743, 958
AspS9I GGNCC 3 cut(s) 309, 363, 1163
AsuHPI GGTGA 8 cut(s) 123, 1034, 1259, 1312, 1349, 1508, 1553, 1706
AvaII GGWCC 2 cut(s) 309, 1163
BamHI GGATCC 1 cut(s) 412
BarI GAAGNNNNNNTAC 2 cut(s) 155, 187
BbsI GAAGAC 1 cut(s) 1717
Bbv12I GWGCWC 1 cut(s) 1707
BbvI GCAGC 2 cut(s) 1040, 1095
BccI CCATC 8 cut(s) 140, 611, 713, 721, 1110, 1205, 1357, 1695
BceAI ACGGC 1 cut(s) 377
BciT130I CCWGG 5 cut(s) 233, 417, 545, 876, 1167
BcoDI GTCTC 2 cut(s) 391, 1624
BfaI CTAG 6 cut(s) 14, 506, 918, 1146, 1334, 1409
BfmI CTRYAG 1 cut(s) 246
BisI GCNGC 4 cut(s) 666, 687, 1029, 1084
BlpI GCTNAGC 1 cut(s) 867
BlsI GCNGC 4 cut(s) 667, 688, 1030, 1085
BmcAI AGTACT 1 cut(s) 12
Bme1390I CCNGG 5 cut(s) 233, 417, 545, 876, 1167
Bme18I GGWCC 2 cut(s) 309, 1163
BmgT120I GGNCC 3 cut(s) 309, 363, 1163
BmiI GGNNCC 3 cut(s) 414, 880, 1164
BmrFI CCNGG 5 cut(s) 233, 417, 545, 876, 1167
BmsI GCATC 3 cut(s) 830, 1240, 1563
BpiI GAAGAC 1 cut(s) 1717
BpmI CTGGAG 3 cut(s) 27, 788, 865
Bpu1102I GCTNAGC 1 cut(s) 867
BpuEI CTTGAG 3 cut(s) 43, 810, 812
Bsa29I ATCGAT 1 cut(s) 268
BsaHI GRCGYC 1 cut(s) 1633
BsaJI CCNNGG 4 cut(s) 231, 359, 543, 1166
BsaXI ACNNNNNCTCC 2 cut(s) 714, 744
Bsc4I CCNNNNNNNGG 1 cut(s) 719
Bse1I ACTGG 2 cut(s) 771, 1398
Bse3DI GCAATG 1 cut(s) 312
BseBI CCWGG 5 cut(s) 233, 417, 545, 876, 1167
BseCI ATCGAT 1 cut(s) 268
BseDI CCNNGG 4 cut(s) 231, 359, 543, 1166
BseGI GGATG 8 cut(s) 151, 529, 778, 980, 1102, 1372, 1378, 1426
BseLI CCNNNNNNNGG 1 cut(s) 719
BseMI GCAATG 1 cut(s) 312
BseMII CTCAG 2 cut(s) 881, 1194
BseNI ACTGG 2 cut(s) 771, 1398
BseRI GAGGAG 1 cut(s) 1070
BseXI GCAGC 2 cut(s) 1040, 1095
BseYI CCCAGC 1 cut(s) 17
BshFI GGCC 3 cut(s) 364, 689, 1456
BshVI ATCGAT 1 cut(s) 268
BsiHKAI GWGCWC 1 cut(s) 1707
BslFI GGGAC 3 cut(s) 800, 1176, 1549
BslI CCNNNNNNNGG 1 cut(s) 719
BsmAI GTCTC 2 cut(s) 391, 1624
BsmBI CGTCTC 1 cut(s) 1624
BsmFI GGGAC 3 cut(s) 800, 1176, 1549
BsmI GAATGC 1 cut(s) 586
BsnI GGCC 3 cut(s) 364, 689, 1456
Bsp1286I GDGCHC 1 cut(s) 1707
Bsp1407I TGTACA 1 cut(s) 191
Bsp143I GATC 2 cut(s) 412, 1474
Bsp1720I GCTNAGC 1 cut(s) 867
BspACI CCGC 6 cut(s) 94, 178, 665, 686, 890, 1463
BspANI GGCC 3 cut(s) 364, 689, 1456
BspCNI CTCAG 2 cut(s) 880, 1193
BspDI ATCGAT 1 cut(s) 268
BspLI GGNNCC 3 cut(s) 414, 880, 1164
BspPI GGATC 2 cut(s) 407, 420
BsrDI GCAATG 1 cut(s) 312
BsrGI TGTACA 1 cut(s) 191
BsrI ACTGG 2 cut(s) 771, 1398
BssECI CCNNGG 4 cut(s) 231, 359, 543, 1166
BssMI GATC 2 cut(s) 412, 1474
BssNI GRCGYC 1 cut(s) 1633
Bst2UI CCWGG 5 cut(s) 233, 417, 545, 876, 1167
Bst4CI ACNGT 4 cut(s) 35, 135, 191, 322
Bst6I CTCTTC 2 cut(s) 78, 117
BstACI GRCGYC 1 cut(s) 1633
BstAPI GCANNNNNTGC 1 cut(s) 581
BstAUI TGTACA 1 cut(s) 191
BstC8I GCNNGC 2 cut(s) 641, 1454
BstDEI CTNAG 3 cut(s) 867, 1180, 1323
BstDSI CCRYGG 1 cut(s) 359
BstF5I GGATG 8 cut(s) 151, 529, 778, 980, 1102, 1372, 1378, 1426
BstKTI GATC 2 cut(s) 415, 1477
BstMAI GTCTC 2 cut(s) 391, 1624
BstMBI GATC 2 cut(s) 412, 1474
BstMWI GCNNNNNNNGC 5 cut(s) 581, 596, 649, 671, 802
BstNI CCWGG 5 cut(s) 233, 417, 545, 876, 1167
BstNSI RCATGY 3 cut(s) 293, 331, 911
BstSCI CCNGG 5 cut(s) 231, 415, 543, 874, 1165
BstSFI CTRYAG 1 cut(s) 246
BstV1I GCAGC 2 cut(s) 1040, 1095
BstV2I GAAGAC 1 cut(s) 1717
BstX2I RGATCY 1 cut(s) 412
BstXI CCANNNNNNTGG 1 cut(s) 766
BstYI RGATCY 1 cut(s) 412
Bsu15I ATCGAT 1 cut(s) 268
BsuRI GGCC 3 cut(s) 364, 689, 1456
BsuTUI ATCGAT 1 cut(s) 268
BtgI CCRYGG 1 cut(s) 359
BtsCI GGATG 8 cut(s) 151, 529, 778, 980, 1102, 1372, 1378, 1426
BtsIMutI CAGTG 2 cut(s) 40, 1045
Cac8I GCNNGC 2 cut(s) 641, 1454
Cfr13I GGNCC 3 cut(s) 309, 363, 1163
ClaI ATCGAT 1 cut(s) 268
CseI GACGC 1 cut(s) 1641
Csp6I GTAC 5 cut(s) 11, 192, 935, 1445, 1485
CspCI CAANNNNNGTGG 2 cut(s) 348, 383
CviQI GTAC 5 cut(s) 11, 192, 935, 1445, 1485
DdeI CTNAG 3 cut(s) 867, 1180, 1323
DpnI GATC 2 cut(s) 414, 1476
DpnII GATC 2 cut(s) 412, 1474
EaeI YGGCCR 1 cut(s) 687
Eam1104I CTCTTC 2 cut(s) 78, 117
EarI CTCTTC 2 cut(s) 78, 117
EciI GGCGGA 1 cut(s) 1478
Eco47I GGWCC 2 cut(s) 309, 1163
EcoO109I RGGNCCY 1 cut(s) 1163
EcoRI GAATTC 2 cut(s) 64, 127
EcoRII CCWGG 5 cut(s) 231, 415, 543, 874, 1165
EcoT22I ATGCAT 2 cut(s) 329, 1578
Esp3I CGTCTC 1 cut(s) 1624
FaqI GGGAC 3 cut(s) 800, 1176, 1549
FauI CCCGC 1 cut(s) 101
FblI GTMKAC 1 cut(s) 622
Fnu4HI GCNGC 4 cut(s) 666, 687, 1029, 1084
FokI GGATG 8 cut(s) 158, 516, 785, 967, 1089, 1379, 1385, 1433
Fsp4HI GCNGC 4 cut(s) 666, 687, 1029, 1084
FspBI CTAG 6 cut(s) 14, 506, 918, 1146, 1334, 1409
GluI GCNGC 4 cut(s) 666, 687, 1029, 1084
GsaI CCCAGC 1 cut(s) 21
GsuI CTGGAG 3 cut(s) 27, 788, 865
HaeIII GGCC 3 cut(s) 364, 689, 1456
HgaI GACGC 1 cut(s) 1641
Hin1I GRCGYC 1 cut(s) 1633
HinfI GANTC 2 cut(s) 270, 997
HphI GGTGA 8 cut(s) 123, 1034, 1259, 1312, 1349, 1508, 1553, 1706
Hpy166II GTNNAC 2 cut(s) 623, 1552
Hpy188I TCNGA 6 cut(s) 718, 964, 1002, 1183, 1474, 1621
Hpy188III TCNNGA 7 cut(s) 841, 882, 1094, 1146, 1230, 1292, 1607
Hpy8I GTNNAC 2 cut(s) 623, 1552
HpyAV CCTTC 8 cut(s) 157, 300, 403, 721, 1297, 1426, 1532, 1616
HpyCH4III ACNGT 4 cut(s) 35, 135, 191, 322
HpyCH4IV ACGT 2 cut(s) 926, 937
HpyF10VI GCNNNNNNNGC 5 cut(s) 581, 596, 649, 671, 802
HpyF3I CTNAG 3 cut(s) 867, 1180, 1323
HpySE526I ACGT 2 cut(s) 926, 937
Hsp92I GRCGYC 1 cut(s) 1633
Kzo9I GATC 2 cut(s) 412, 1474
LmnI GCTCC 1 cut(s) 884
Lsp1109I GCAGC 2 cut(s) 1040, 1095
LweI GCATC 3 cut(s) 830, 1240, 1563
MaeI CTAG 6 cut(s) 14, 506, 918, 1146, 1334, 1409
MaeII ACGT 2 cut(s) 926, 937
MaeIII GTNAC 3 cut(s) 235, 708, 751
MalI GATC 2 cut(s) 414, 1476
MboI GATC 2 cut(s) 412, 1474
MboII GAAGA 8 cut(s) 95, 120, 134, 250, 265, 1409, 1667, 1722
MflI RGATCY 1 cut(s) 412
MhlI GDGCHC 1 cut(s) 1707
MluCI AATT 9 cut(s) 64, 127, 489, 563, 604, 644, 743, 958, 1283
MmeI TCCRAC 1 cut(s) 123
Mph1103I ATGCAT 2 cut(s) 329, 1578
MseI TTAA 7 cut(s) 158, 476, 567, 612, 648, 699, 1512
MslI CAYNNNNRTG 2 cut(s) 1641, 1692
MspA1I CMGCKG 1 cut(s) 96
MspR9I CCNGG 5 cut(s) 233, 417, 545, 876, 1167
Mva1269I GAATGC 1 cut(s) 586
MvaI CCWGG 5 cut(s) 233, 417, 545, 876, 1167
MwoI GCNNNNNNNGC 5 cut(s) 581, 596, 649, 671, 802
NdeII GATC 2 cut(s) 412, 1474
NlaIV GGNNCC 3 cut(s) 414, 880, 1164
NmuCI GTSAC 1 cut(s) 751
NsiI ATGCAT 2 cut(s) 329, 1578
NspI RCATGY 3 cut(s) 293, 331, 911
OliI CACNNNNGTG 1 cut(s) 1641
PctI GAATGC 1 cut(s) 586
PfeI GAWTC 2 cut(s) 270, 997
PflMI CCANNNNNTGG 1 cut(s) 719
PkrI GCNGC 4 cut(s) 667, 688, 1030, 1085
PpuMI RGGWCCY 1 cut(s) 1163
PsiI TTATAA 2 cut(s) 401, 537
Psp5II RGGWCCY 1 cut(s) 1163
Psp6I CCWGG 5 cut(s) 231, 415, 543, 874, 1165
PspFI CCCAGC 1 cut(s) 17
PspGI CCWGG 5 cut(s) 231, 415, 543, 874, 1165
PspN4I GGNNCC 3 cut(s) 414, 880, 1164
PspPI GGNCC 3 cut(s) 309, 363, 1163
PspPPI RGGWCCY 1 cut(s) 1163
PsuI RGATCY 1 cut(s) 412
RsaI GTAC 5 cut(s) 12, 193, 936, 1446, 1486
RsaNI GTAC 5 cut(s) 11, 192, 935, 1445, 1485
RseI CAYNNNNRTG 2 cut(s) 1641, 1692
SaqAI TTAA 7 cut(s) 158, 476, 567, 612, 648, 699, 1512
SatI GCNGC 4 cut(s) 666, 687, 1029, 1084
Sau3AI GATC 2 cut(s) 412, 1474
Sau96I GGNCC 3 cut(s) 309, 363, 1163
ScaI AGTACT 1 cut(s) 12
ScrFI CCNGG 5 cut(s) 233, 417, 545, 876, 1167
SduI GDGCHC 1 cut(s) 1707
SfaNI GCATC 3 cut(s) 830, 1240, 1563
SfcI CTRYAG 1 cut(s) 246
SinI GGWCC 2 cut(s) 309, 1163
SmiMI CAYNNNNRTG 2 cut(s) 1641, 1692
SmlI CTYRAG 3 cut(s) 58, 791, 825
SmoI CTYRAG 3 cut(s) 58, 791, 825
Sse9I AATT 9 cut(s) 64, 127, 489, 563, 604, 644, 743, 958, 1283
SsiI CCGC 6 cut(s) 94, 178, 665, 686, 890, 1463
SspI AATATT 1 cut(s) 678
SspMI CTAG 6 cut(s) 14, 506, 918, 1146, 1334, 1409
StyD4I CCNGG 5 cut(s) 231, 415, 543, 874, 1165
TaaI ACNGT 4 cut(s) 35, 135, 191, 322
TaiI ACGT 2 cut(s) 929, 940
TaqI TCGA 5 cut(s) 268, 840, 1044, 1231, 1291
TasI AATT 9 cut(s) 64, 127, 489, 563, 604, 644, 743, 958, 1283
TatI WGTACW 3 cut(s) 10, 191, 1444
TauI GCSGC 2 cut(s) 668, 689
TfiI GAWTC 2 cut(s) 270, 997
Tru1I TTAA 7 cut(s) 158, 476, 567, 612, 648, 699, 1512
Tru9I TTAA 7 cut(s) 158, 476, 567, 612, 648, 699, 1512
TscAI CASTG 2 cut(s) 40, 1045
TseFI GTSAC 1 cut(s) 751
TseI GCWGC 2 cut(s) 1028, 1083
Tsp45I GTSAC 1 cut(s) 751
TspDTI ATGAA 7 cut(s) 39, 87, 963, 969, 1211, 1437, 1725
TspGWI ACGGA 2 cut(s) 495, 640
TspRI CASTG 2 cut(s) 40, 1045
Van91I CCANNNNNTGG 1 cut(s) 719
VpaK11BI GGWCC 2 cut(s) 309, 1163
XapI RAATTY 6 cut(s) 64, 127, 563, 604, 743, 958
XbaI TCTAGA 1 cut(s) 1145
XceI RCATGY 3 cut(s) 293, 331, 911
XmiI GTMKAC 1 cut(s) 622
XspI CTAG 6 cut(s) 14, 506, 918, 1146, 1334, 1409
ZrmI AGTACT 1 cut(s) 12
Zsp2I ATGCAT 2 cut(s) 329, 1578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.