Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001562

Physical Location & Seq

Genomic Coordinates Forward (+)

20990005 .. 20995692

Gene Structure 5688 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG183800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGATCACGTCCGTCAGATCAACCTGCCTCAAAACTAAGCTGCCCTCTCCTATTCGTCAATTCCAGGAAGCTACGGGACTGTTCCAATCTACAACATTCAACTTTATAAATTTTGTACATCCGGTTTGTTGTAAATTTGTGAGCAGAGATATACATATGGCTGGTTTTTTGCCTGCTGAGTCCTCTCATAGTGGAATCACTGGTATGTATGATGGTGGGTCCTCTAATGCTCAGGAGAGGCTGGAGGAAGGATCCTGTTGGTACTTTTACAGAAAGGAAATTGAAGAAAATTCTCCATCTAGACTAGATGGCATTGACTTGAAGAAGGAGACATATCTACGCAAGTCATACTGTACTTTTCTACAAGATTTGGGCATGAGACTTAAAGTACCCCAGGTAACAATTGCAACAGCCATAATTTTCTGTCACCGATTTTTTCTTCGACAATCACATGCAAGAAATGATAGAAGGACTATTGCAACAGTTTGTATGTTTCTTGCTGGCAAGGTTGAAGAAACTCCACGGCCACTGAAAGATGTTATCATCGTTTCTTATGAAATTATACATAAGAAGGATCCTGCAGCAGTTCAGAAGATCAAGCAAAAGGAGGTATATGAACAGCAGAAAGAACTAATTCTTAGTGGAGAGAGGGTTGTTCTTGCAACTCTTGGTTTTGATCTAAATTTACTGCATCCTTATAAACCCCTTGTTGAGGCGATAAAGAAATTTAAAGTAGCTCAAAATGCCCTTGCTCAAGTTGCATGGAATTTCGTCAATGATGGACTTCGGACATCTCTTTGCTTGCAATTTAAACCCCACCACATTGCAGCTGGTGCCATTTTCCTCGCTGCCAAATTCCTCAAAGTAAAGCTCCCGTCAGATGGCGAGAAGGTCTGGTGGCAAGAGTTTGACGTCACCCCACGCCAGTTGGAGGGTGGGTGTCCTCATTTTAATTCAGTAGGTGATGCTACAGAGCAATCAACAGTGTCCGTTTCCCACCCTTTGTTCTCCATTAGTCCAGATTTTCCTCCATTATTTTTTCTGCCCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

350

Amino Acids

39.68

Weight (kDa)

8.86

Isoelectric Point (pI)

49.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	89 - 228	1.3e-17	Cyclin, N-terminal domain
CycT2-like_C	PF21797	231 - 305	1.2e-06	Cyclin-T2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19600 AT5G45190 AT5G45190 AT5G45190
fragaria_vesca	FvH4_3g15520 FvH4_3g15520 FvH4_3g15520 FvH4_3g15521 FvH4_3g15521
malus_domestica	MD05G1222500.v1.1 MD05G1222600.v1.1 MD10G1204100.v1.1 MD10G1204200.v1.1
prunus_persica	Prupe.4G137700_v2.0.a1 Prupe.4G137800_v2.0.a1
pyrus_communis	pycom05g20520 pycom10g17480 pycom10g17490
rosa_chinensis	RchiOBHm_Chr5g0026141 RchiOBHm_Chr5g0026151
rosa_laevigata	RLG00000032906 RLG00000032907
rosa_multiflora	Rmu_co8230253.1_g000001 Rmu_co8464075.1_g000001 Rmu_sc0002806.1_g000001 Rmu_sc0002909.1_g000016 Rmu_sc0009679.1_g000001 Rmu_sc0009679.1_g000002 Rmu_sc0029141.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053050 Rroxscaffold_1G00053160 Rroxscaffold_1G00053170
rosa_rugosa	Rorug05G0091000.1
rosa_samantha	Rh2CG288400 Rh5AG183800 Rh5AG183900 Rh5AG184000 Rh5BG180600 Rh5BG180700 Rh5BG180800 Rh5CG199600 Rh5CG199700 Rh5CG199800 Rh5CG201400 Rh5DG182200 Rh5DG182300 Rh5DG182400
rosa_wichuraiana	Rw5G016640 Rw5G016650 Rw5G016810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	107, 699
AatII	GACGTC	1 cut(s)	915
Acc36I	ACCTGC	1 cut(s)	32
AccB1I	GGYRCC	1 cut(s)	833
AclWI	GGATC	4 cut(s)	246, 259, 569, 582
AcoI	YGGCCR	1 cut(s)	524
AcsI	RAATTY	7 cut(s)	109, 134, 289, 682, 725, 766, 854
AcyI	GRCGYC	1 cut(s)	912
AfaI	GTAC	4 cut(s)	117, 263, 355, 390
AfiI	CCNNNNNNNGG	3 cut(s)	712, 881, 931
AgsI	TTSAA	4 cut(s)	100, 284, 322, 512
AjiI	CACGTC	1 cut(s)	9
AjnI	CCWGG	2 cut(s)	63, 393
AluBI	AGCT	5 cut(s)	40, 71, 737, 830, 871
AluI	AGCT	5 cut(s)	40, 71, 737, 830, 871
Alw26I	GTCTC	2 cut(s)	323, 373
AlwI	GGATC	4 cut(s)	246, 259, 569, 582
AoxI	GGCC	1 cut(s)	524
ApeKI	GCWGC	4 cut(s)	40, 581, 827, 848
ApoI	RAATTY	7 cut(s)	109, 134, 289, 682, 725, 766, 854
Asp700I	GAANNNNTTC	1 cut(s)	633
AspS9I	GGNCC	1 cut(s)	219
AsuHPI	GGTGA	3 cut(s)	419, 907, 974
AvaII	GGWCC	1 cut(s)	219
BamHI	GGATCC	2 cut(s)	251, 574
BanI	GGYRCC	1 cut(s)	833
BbvI	GCAGC	4 cut(s)	27, 593, 835, 839
BccI	CCATC	5 cut(s)	206, 302, 304, 773, 875
BceAI	ACGGC	1 cut(s)	539
BciT130I	CCWGG	2 cut(s)	65, 395
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	2 cut(s)	323, 373
BfaI	CTAG	2 cut(s)	300, 305
BfmI	CTRYAG	2 cut(s)	579, 969
BfuAI	ACCTGC	1 cut(s)	32
BisI	GCNGC	4 cut(s)	41, 582, 828, 849
BlsI	GCNGC	4 cut(s)	42, 583, 829, 850
Bme1390I	CCNGG	2 cut(s)	65, 395
Bme18I	GGWCC	1 cut(s)	219
BmgBI	CACGTC	1 cut(s)	9
BmgT120I	GGNCC	1 cut(s)	219
BmiI	GGNNCC	4 cut(s)	220, 253, 576, 835
BmrFI	CCNGG	2 cut(s)	65, 395
BmsI	GCATC	2 cut(s)	700, 955
BpmI	CTGGAG	1 cut(s)	263
Bpu10I	CCTNAGC	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	738
BsaHI	GRCGYC	1 cut(s)	912
BsaJI	CCNNGG	2 cut(s)	393, 521
BsaWI	WCCGGW	1 cut(s)	121
BsaXI	ACNNNNNCTCC	4 cut(s)	636, 666, 923, 953
Bsc4I	CCNNNNNNNGG	3 cut(s)	712, 881, 931
Bse1I	ACTGG	2 cut(s)	205, 925
Bse3DI	GCAATG	1 cut(s)	822
BseBI	CCWGG	2 cut(s)	65, 395
BseDI	CCNNGG	2 cut(s)	393, 521
BseGI	GGATG	2 cut(s)	118, 691
BseLI	CCNNNNNNNGG	3 cut(s)	712, 881, 931
BseMI	GCAATG	1 cut(s)	822
BseMII	CTCAG	2 cut(s)	168, 245
BseNI	ACTGG	2 cut(s)	205, 925
BseXI	GCAGC	4 cut(s)	27, 593, 835, 839
BshFI	GGCC	1 cut(s)	526
BshNI	GGYRCC	1 cut(s)	833
BsiSI	CCGG	1 cut(s)	122
BslFI	GGGAC	1 cut(s)	90
BslI	CCNNNNNNNGG	3 cut(s)	712, 881, 931
BsmAI	GTCTC	2 cut(s)	323, 373
BsmFI	GGGAC	1 cut(s)	90
BsnI	GGCC	1 cut(s)	526
Bsp1407I	TGTACA	1 cut(s)	115
Bsp143I	GATC	6 cut(s)	3, 17, 251, 574, 594, 676
BspANI	GGCC	1 cut(s)	526
BspCNI	CTCAG	2 cut(s)	169, 244
BspLI	GGNNCC	4 cut(s)	220, 253, 576, 835
BspMAI	CTGCAG	1 cut(s)	583
BspMI	ACCTGC	1 cut(s)	32
BspPI	GGATC	4 cut(s)	246, 259, 569, 582
BspT107I	GGYRCC	1 cut(s)	833
BsrDI	GCAATG	1 cut(s)	822
BsrGI	TGTACA	1 cut(s)	115
BsrI	ACTGG	2 cut(s)	205, 925
BssECI	CCNNGG	2 cut(s)	393, 521
BssMI	GATC	6 cut(s)	3, 17, 251, 574, 594, 676
BssNI	GRCGYC	1 cut(s)	912
Bst2UI	CCWGG	2 cut(s)	65, 395
Bst4CI	ACNGT	4 cut(s)	81, 353, 484, 985
BstACI	GRCGYC	1 cut(s)	912
BstAPI	GCANNNNNTGC	1 cut(s)	833
BstAUI	TGTACA	1 cut(s)	115
BstC8I	GCNNGC	3 cut(s)	174, 502, 803
BstDEI	CTNAG	4 cut(s)	36, 177, 231, 638
BstDSI	CCRYGG	1 cut(s)	521
BstENI	CCTNNNNNAGG	1 cut(s)	710
BstF5I	GGATG	2 cut(s)	118, 691
BstKTI	GATC	6 cut(s)	6, 20, 254, 577, 597, 679
BstMAI	GTCTC	2 cut(s)	323, 373
BstMBI	GATC	6 cut(s)	3, 17, 251, 574, 594, 676
BstMWI	GCNNNNNNNGC	3 cut(s)	743, 758, 833
BstNI	CCWGG	2 cut(s)	65, 395
BstNSI	RCATGY	1 cut(s)	455
BstSCI	CCNGG	2 cut(s)	63, 393
BstSFI	CTRYAG	2 cut(s)	579, 969
BstV1I	GCAGC	4 cut(s)	27, 593, 835, 839
BstX2I	RGATCY	2 cut(s)	251, 574
BstYI	RGATCY	2 cut(s)	251, 574
BsuRI	GGCC	1 cut(s)	526
BtgI	CCRYGG	1 cut(s)	521
BtrI	CACGTC	1 cut(s)	9
BtsCI	GGATG	2 cut(s)	118, 691
BtsIMutI	CAGTG	3 cut(s)	198, 527, 990
BveI	ACCTGC	1 cut(s)	32
Cac8I	GCNNGC	3 cut(s)	174, 502, 803
Cfr13I	GGNCC	1 cut(s)	219
Csp6I	GTAC	4 cut(s)	116, 262, 354, 389
CspCI	CAANNNNNGTGG	2 cut(s)	909, 944
CviAII	CATG	3 cut(s)	376, 452, 762
CviJI	RGCY	9 cut(s)	40, 71, 161, 241, 413, 526, 737, 830, 871
CviKI_1	RGCY	9 cut(s)	40, 71, 161, 241, 413, 526, 737, 830, 871
CviQI	GTAC	4 cut(s)	116, 262, 354, 389
DdeI	CTNAG	4 cut(s)	36, 177, 231, 638
DpnI	GATC	6 cut(s)	5, 19, 253, 576, 596, 678
DpnII	GATC	6 cut(s)	3, 17, 251, 574, 594, 676
DraI	TTTAAA	2 cut(s)	730, 811
EaeI	YGGCCR	1 cut(s)	524
Eco47I	GGWCC	1 cut(s)	219
EcoNI	CCTNNNNNAGG	1 cut(s)	710
EcoO109I	RGGNCCY	1 cut(s)	219
EcoRII	CCWGG	2 cut(s)	63, 393
FaeI	CATG	3 cut(s)	379, 455, 765
FaqI	GGGAC	1 cut(s)	90
FatI	CATG	3 cut(s)	375, 451, 761
FauNDI	CATATG	1 cut(s)	156
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	4 cut(s)	41, 582, 828, 849
FokI	GGATG	2 cut(s)	105, 678
Fsp4HI	GCNGC	4 cut(s)	41, 582, 828, 849
FspBI	CTAG	2 cut(s)	300, 305
GluI	GCNGC	4 cut(s)	41, 582, 828, 849
GsuI	CTGGAG	1 cut(s)	263
HaeIII	GGCC	1 cut(s)	526
HapII	CCGG	1 cut(s)	122
Hin1I	GRCGYC	1 cut(s)	912
Hin1II	CATG	3 cut(s)	379, 455, 765
HinfI	GANTC	2 cut(s)	179, 195
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	3 cut(s)	419, 907, 974
Hpy188I	TCNGA	4 cut(s)	17, 591, 789, 880
Hpy188III	TCNNGA	3 cut(s)	233, 300, 1019
HpyAV	CCTTC	5 cut(s)	242, 319, 462, 565, 883
HpyCH4III	ACNGT	4 cut(s)	81, 353, 484, 985
HpyCH4IV	ACGT	2 cut(s)	8, 912
HpyCH4V	TGCA	9 cut(s)	407, 455, 479, 581, 662, 691, 761, 805, 827
HpyF10VI	GCNNNNNNNGC	3 cut(s)	743, 758, 833
HpyF3I	CTNAG	4 cut(s)	36, 177, 231, 638
HpySE526I	ACGT	2 cut(s)	8, 912
Hsp92I	GRCGYC	1 cut(s)	912
Hsp92II	CATG	3 cut(s)	379, 455, 765
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	6 cut(s)	3, 17, 251, 574, 594, 676
LmnI	GCTCC	1 cut(s)	876
Lsp1109I	GCAGC	4 cut(s)	27, 593, 835, 839
LweI	GCATC	2 cut(s)	700, 955
MaeI	CTAG	2 cut(s)	300, 305
MaeII	ACGT	2 cut(s)	8, 912
MaeIII	GTNAC	3 cut(s)	397, 425, 913
MalI	GATC	6 cut(s)	5, 19, 253, 576, 596, 678
MboI	GATC	6 cut(s)	3, 17, 251, 574, 594, 676
MboII	GAAGA	5 cut(s)	296, 334, 431, 524, 604
MfeI	CAATTG	1 cut(s)	402
MflI	RGATCY	2 cut(s)	251, 574
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	1 cut(s)	909
MroXI	GAANNNNTTC	1 cut(s)	633
MseI	TTAA	4 cut(s)	384, 729, 810, 951
MslI	CAYNNNNRTG	1 cut(s)	203
MspA1I	CMGCKG	1 cut(s)	830
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	2 cut(s)	65, 395
MunI	CAATTG	1 cut(s)	402
MvaI	CCWGG	2 cut(s)	65, 395
MwoI	GCNNNNNNNGC	3 cut(s)	743, 758, 833
NdeI	CATATG	1 cut(s)	156
NdeII	GATC	6 cut(s)	3, 17, 251, 574, 594, 676
NlaIII	CATG	3 cut(s)	379, 455, 765
NlaIV	GGNNCC	4 cut(s)	220, 253, 576, 835
NmuCI	GTSAC	2 cut(s)	425, 913
NspI	RCATGY	1 cut(s)	455
PdmI	GAANNNNTTC	1 cut(s)	633
PfeI	GAWTC	1 cut(s)	195
PfoI	TCCNGGA	1 cut(s)	63
PkrI	GCNGC	4 cut(s)	42, 583, 829, 850
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
PpuMI	RGGWCCY	1 cut(s)	219
PsiI	TTATAA	2 cut(s)	107, 699
Psp5II	RGGWCCY	1 cut(s)	219
Psp6I	CCWGG	2 cut(s)	63, 393
PspGI	CCWGG	2 cut(s)	63, 393
PspN4I	GGNNCC	4 cut(s)	220, 253, 576, 835
PspPI	GGNCC	1 cut(s)	219
PspPPI	RGGWCCY	1 cut(s)	219
PstI	CTGCAG	1 cut(s)	583
PsuI	RGATCY	2 cut(s)	251, 574
PvuII	CAGCTG	1 cut(s)	830
RsaI	GTAC	4 cut(s)	117, 263, 355, 390
RsaNI	GTAC	4 cut(s)	116, 262, 354, 389
RseI	CAYNNNNRTG	1 cut(s)	203
SaqAI	TTAA	4 cut(s)	384, 729, 810, 951
SatI	GCNGC	4 cut(s)	41, 582, 828, 849
Sau3AI	GATC	6 cut(s)	3, 17, 251, 574, 594, 676
Sau96I	GGNCC	1 cut(s)	219
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	2 cut(s)	65, 395
SfaNI	GCATC	2 cut(s)	700, 955
SfcI	CTRYAG	2 cut(s)	579, 969
SinI	GGWCC	1 cut(s)	219
SmiMI	CAYNNNNRTG	1 cut(s)	203
SmlI	CTYRAG	1 cut(s)	753
SmoI	CTYRAG	1 cut(s)	753
SspMI	CTAG	2 cut(s)	300, 305
StyD4I	CCNGG	2 cut(s)	63, 393
TaaI	ACNGT	4 cut(s)	81, 353, 484, 985
TaiI	ACGT	2 cut(s)	11, 915
TaqI	TCGA	1 cut(s)	442
TatI	WGTACW	2 cut(s)	115, 353
TfiI	GAWTC	1 cut(s)	195
Tru1I	TTAA	4 cut(s)	384, 729, 810, 951
Tru9I	TTAA	4 cut(s)	384, 729, 810, 951
TscAI	CASTG	3 cut(s)	205, 534, 990
TseFI	GTSAC	2 cut(s)	425, 913
TseI	GCWGC	4 cut(s)	40, 581, 827, 848
Tsp45I	GTSAC	2 cut(s)	425, 913
TspDTI	ATGAA	2 cut(s)	570, 630
TspGWI	ACGGA	1 cut(s)	979
TspRI	CASTG	3 cut(s)	205, 534, 990
VpaK11BI	GGWCC	1 cut(s)	219
XagI	CCTNNNNNAGG	1 cut(s)	710
XapI	RAATTY	7 cut(s)	109, 134, 289, 682, 725, 766, 854
XbaI	TCTAGA	1 cut(s)	299
XceI	RCATGY	1 cut(s)	455
XcmI	CCANNNNNNNNNTGG	2 cut(s)	827, 932
XmnI	GAANNNNTTC	1 cut(s)	633
XspI	CTAG	2 cut(s)	300, 305
ZraI	GACGTC	1 cut(s)	913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.