Rw5G016650

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
21148884 .. 21152393
3510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G016650.1

Sequence Viewer

Length: 1770 bp
ATGGCTTCCTTTTTGTCTGGCGATTCTTCTAACTTTGCTGTGAGTGAAAGTAGTTGCTATAGACAGACTGAGGATAAAGAGGAAGGAGGCTCTTGGTACTTCTCCAGGAAGGAAATTGAAGAAAATTCTCCATCTAAAGTAGATGGCATAGACTTAAAGAAAGAGGCGTATCTACGAAAGTCATACTGTACTTTTCTACAAGATTTGGGGATGAGACTTAAAGTACCCCAGGTAACAATTGCAACAGCCATAATTTTCTGTCATCGGTTCTATGTTTGCCAATCACATGCAAAGAATGATAGAAGGACCATTGCAACAGTGTGTATGTTTCTCGCCGGTAAGGTTGAAGAAACTCCCCGGCCTCTGAAAGATGTTATCCTTGTCTCCTATGAAATTATTCATAAGAAGGATCCTGCAGCAGCTCAGAGAATCAAGCAAAAGGAGGTATATGAACAGCAGAAGGAATTGATTTTAACTGGCGAGAGGGTTGTTCTCGGAACTCTTGCTTTTGATTTCAATGTACACCATCCGTATAAACCCCTGGTGGAGGCAATAAAGAAATTCAAAGTAGCTCAAAATGCTCTCGCCCAAGTTGCATGGAATTTTGTTAATGACGGACTTCGGACTTCTCTTTGCTTGCAATTTAAGCCCCACCACATTGCAGCTGGTGCCATTTTTCTTGCCGCCAAGTTCCTCAAAGTAAAGCTTCCATCAGATGGCGAGAAGGTCTGGTGGCAAGAGTTTGATGTCACCCCACGCCAATTGGAGGAGGTTAGCAATCAAATGTTGGAGCTGTATGAACAAAATAGATTTCCATCTTCCGACGATGTTGAAGGTACTGTAGCAACTGCTACGAAGACTAAATCCAGGATGGAGCACCAAGACCAGGATCATGGCTCTAACAGTCATTTGCAGGCTGGAGGTACAAGATCTGGAACCTCAAGGCCGGCATCTAGGCCTGCATCTGAGCAGTCATATGTTGAGAATGATTACCCGGCTAGAACTTCCCAGAGTCAAAATGATGACTACAGAAGTGCTGGAATGACAGGTTCTTTGGATCAAAATATGGAAGTCGAAGACAATCACCACCCCAAAGTCCAGGAAGCTCAAAATGTATCAAGGTTTGTGTCCGAGGGACGTAGTGAAGAAGGTCAAGAAAGAGAGAGTAATGACAGGAAGGGTGAAATAAGGGATGGAGGGGACAAACATTTTGGCCGAAATCTGGACAATTCACAAAGTGCCCTTGGTCAATCACCTCAAGAAGCTATTAAGAAAATCGACAAGGACAAAGTAAGGGCAGCATTGGAGAAACGAAGGAAAGCCACTGCTGATATGACCAGGAAAACAGATTTGCTGGATGAGGATGATCTGATTGAGAGGGAGCTGGAAGATGGTATTGAACTGGCTGGTGGGAGTGAGAAAAACAAACGGGACAGAAGGCAAAGCTGGTCCAAGTCCTCACATAGACAAGAACATGAGAGCCTTCATCAGGGAAAACATCGAGAGGGTGTTGGAGATGGTGGACCACGTTTTAGTACTATTGAAGAAGGTGAGGTATCAGCCTTTGAAGCTGGACATGAATTTCCGTCACCCAAATCAAGCAGTCGCAAGAGAAAGGAAGGAAGCCCCCTAGAAATTGTTGCAGAAAAGAAACAGAGACATGATTATCGCCATAATCACTTTGACCATACTGAAAATCATAACAGGGTAGGCAGAGTTGGCCACACTGAAAGGGATAATAAAAGGCCTGTACAGGAGAATCATGTCTGA

Protein Analysis

589

Amino Acids

66.91

Weight (kDa)

6.6

Isoelectric Point (pI)

55.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 38 - 172 3.8e-16 Cyclin, N-terminal domain
CycT2-like_C PF21797 176 - 263 2.3e-07 Cyclin-T2-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 668
AccB7I CCANNNNNTGG 1 cut(s) 716
AciI CCGC 1 cut(s) 684
AclWI GGATC 4 cut(s) 404, 417, 897, 1065
AcoI YGGCCR 2 cut(s) 1213, 1720
AcsI RAATTY 4 cut(s) 124, 560, 601, 1580
AdeI CACNNNGTG 1 cut(s) 1238
AfaI GTAC 8 cut(s) 98, 190, 225, 522, 838, 925, 1537, 1752
AfiI CCNNNNNNNGG 6 cut(s) 547, 716, 766, 886, 1222, 1489
AgsI TTSAA 8 cut(s) 119, 347, 517, 565, 833, 1400, 1544, 1568
AjnI CCWGG 7 cut(s) 104, 228, 540, 866, 885, 1098, 1337
Alw21I GWGCWC 1 cut(s) 879
Alw26I GTCTC 3 cut(s) 208, 388, 1651
AlwI GGATC 4 cut(s) 404, 417, 897, 1065
AoxI GGCC 6 cut(s) 359, 944, 956, 1213, 1720, 1745
ApeKI GCWGC 4 cut(s) 416, 419, 662, 1298
ApoI RAATTY 4 cut(s) 124, 560, 601, 1580
ArsI GACNNNNNNTTYG 4 cut(s) 1036, 1068, 1193, 1225
Asp700I GAANNNNTTC 1 cut(s) 396
AspS9I GGNCC 3 cut(s) 306, 1449, 1523
AsuC2I CCSGG 2 cut(s) 358, 995
AsuHPI GGTGA 6 cut(s) 742, 1076, 1193, 1245, 1562, 1581
AvaII GGWCC 3 cut(s) 306, 1449, 1523
BaeGI GKGCMC 1 cut(s) 1243
BalI TGGCCA 1 cut(s) 1722
BamHI GGATCC 1 cut(s) 409
BanI GGYRCC 1 cut(s) 668
BbsI GAAGAC 2 cut(s) 863, 1083
Bbv12I GWGCWC 1 cut(s) 879
BbvI GCAGC 4 cut(s) 428, 431, 674, 1310
BciT130I CCWGG 7 cut(s) 106, 230, 542, 868, 887, 1100, 1339
BcnI CCSGG 2 cut(s) 358, 995
BcoDI GTCTC 3 cut(s) 208, 388, 1651
BfaI CTAG 3 cut(s) 954, 999, 1631
BfmI CTRYAG 4 cut(s) 58, 414, 840, 1027
BglII AGATCT 1 cut(s) 929
BisI GCNGC 5 cut(s) 417, 420, 663, 684, 1299
BlsI GCNGC 5 cut(s) 418, 421, 664, 685, 1300
BmcAI AGTACT 1 cut(s) 1537
Bme1390I CCNGG 9 cut(s) 106, 230, 358, 542, 868, 887, 995, 1100, 1339
Bme18I GGWCC 3 cut(s) 306, 1449, 1523
BmgT120I GGNCC 3 cut(s) 306, 1449, 1523
BmiI GGNNCC 3 cut(s) 411, 670, 937
BmrFI CCNGG 9 cut(s) 106, 230, 358, 542, 868, 887, 995, 1100, 1339
BmsI GCATC 2 cut(s) 959, 971
BpiI GAAGAC 2 cut(s) 863, 1083
BpmI CTGGAG 2 cut(s) 88, 939
BpuEI CTTGAG 2 cut(s) 925, 1242
BpuMI CCSGG 2 cut(s) 358, 995
BsaBI GATNNNNATC 1 cut(s) 814
BsaJI CCNNGG 5 cut(s) 228, 356, 540, 1131, 1243
Bsc4I CCNNNNNNNGG 6 cut(s) 547, 716, 766, 886, 1222, 1489
Bse118I RCCGGY 2 cut(s) 335, 946
Bse1I ACTGG 2 cut(s) 481, 1407
Bse3DI GCAATG 2 cut(s) 309, 657
Bse8I GATNNNNATC 1 cut(s) 814
BseBI CCWGG 7 cut(s) 106, 230, 542, 868, 887, 1100, 1339
BseDI CCNNGG 5 cut(s) 228, 356, 540, 1131, 1243
BseGI GGATG 6 cut(s) 216, 526, 876, 1198, 1363, 1369
BseJI GATNNNNATC 1 cut(s) 814
BseLI CCNNNNNNNGG 6 cut(s) 547, 716, 766, 886, 1222, 1489
BseMI GCAATG 2 cut(s) 309, 657
BseMII CTCAG 3 cut(s) 60, 437, 957
BseNI ACTGG 2 cut(s) 481, 1407
BseRI GAGGAG 1 cut(s) 782
BseSI GKGCMC 1 cut(s) 1243
BseXI GCAGC 4 cut(s) 428, 431, 674, 1310
BshFI GGCC 6 cut(s) 361, 946, 958, 1215, 1722, 1747
BshNI GGYRCC 1 cut(s) 668
BsiHKAI GWGCWC 1 cut(s) 879
BsiSI CCGG 4 cut(s) 336, 358, 947, 995
BslFI GGGAC 3 cut(s) 1149, 1214, 1445
BslI CCNNNNNNNGG 6 cut(s) 547, 716, 766, 886, 1222, 1489
BsmAI GTCTC 3 cut(s) 208, 388, 1651
BsmFI GGGAC 3 cut(s) 1149, 1214, 1445
BsnI GGCC 6 cut(s) 361, 946, 958, 1215, 1722, 1747
Bsp1286I GDGCHC 2 cut(s) 879, 1243
Bsp1407I TGTACA 2 cut(s) 520, 1750
Bsp143I GATC 5 cut(s) 409, 889, 929, 1057, 1366
BspACI CCGC 1 cut(s) 684
BspANI GGCC 6 cut(s) 361, 946, 958, 1215, 1722, 1747
BspCNI CTCAG 3 cut(s) 61, 436, 958
BspLI GGNNCC 3 cut(s) 411, 670, 937
BspMAI CTGCAG 1 cut(s) 418
BspPI GGATC 4 cut(s) 404, 417, 897, 1065
BspT107I GGYRCC 1 cut(s) 668
BsrDI GCAATG 2 cut(s) 309, 657
BsrFI RCCGGY 2 cut(s) 335, 946
BsrGI TGTACA 2 cut(s) 520, 1750
BsrI ACTGG 2 cut(s) 481, 1407
BssAI RCCGGY 2 cut(s) 335, 946
BssECI CCNNGG 5 cut(s) 228, 356, 540, 1131, 1243
BssMI GATC 5 cut(s) 409, 889, 929, 1057, 1366
BssT1I CCWWGG 1 cut(s) 1243
Bst2UI CCWGG 7 cut(s) 106, 230, 542, 868, 887, 1100, 1339
Bst4CI ACNGT 4 cut(s) 188, 319, 841, 905
BstAPI GCANNNNNTGC 1 cut(s) 668
BstAUI TGTACA 2 cut(s) 520, 1750
BstC8I GCNNGC 4 cut(s) 638, 915, 948, 960
BstDEI CTNAG 3 cut(s) 69, 423, 966
BstENI CCTNNNNNAGG 2 cut(s) 545, 1487
BstF5I GGATG 6 cut(s) 216, 526, 876, 1198, 1363, 1369
BstKTI GATC 5 cut(s) 412, 892, 932, 1060, 1369
BstMAI GTCTC 3 cut(s) 208, 388, 1651
BstMBI GATC 5 cut(s) 409, 889, 929, 1057, 1366
BstMWI GCNNNNNNNGC 6 cut(s) 578, 593, 646, 668, 1568, 1719
BstNI CCWGG 7 cut(s) 106, 230, 542, 868, 887, 1100, 1339
BstNSI RCATGY 1 cut(s) 290
BstSCI CCNGG 9 cut(s) 104, 228, 356, 540, 866, 885, 993, 1098, 1337
BstSFI CTRYAG 4 cut(s) 58, 414, 840, 1027
BstSLI GKGCMC 1 cut(s) 1243
BstV1I GCAGC 4 cut(s) 428, 431, 674, 1310
BstV2I GAAGAC 2 cut(s) 863, 1083
BstX2I RGATCY 2 cut(s) 409, 929
BstXI CCANNNNNNTGG 1 cut(s) 893
BstYI RGATCY 2 cut(s) 409, 929
BsuRI GGCC 6 cut(s) 361, 946, 958, 1215, 1722, 1747
BtsCI GGATG 6 cut(s) 216, 526, 876, 1198, 1363, 1369
BtsI GCAGTG 1 cut(s) 1323
BtsIMutI CAGTG 3 cut(s) 324, 1323, 1725
Cac8I GCNNGC 4 cut(s) 638, 915, 948, 960
Cfr10I RCCGGY 2 cut(s) 335, 946
Cfr13I GGNCC 3 cut(s) 306, 1449, 1523
Csp6I GTAC 8 cut(s) 97, 189, 224, 521, 837, 924, 1536, 1751
CspCI CAANNNNNGTGG 2 cut(s) 744, 779
CviAII CATG 7 cut(s) 287, 597, 893, 1475, 1577, 1661, 1763
CviQI GTAC 8 cut(s) 97, 189, 224, 521, 837, 924, 1536, 1751
DdeI CTNAG 3 cut(s) 69, 423, 966
DpnI GATC 5 cut(s) 411, 891, 931, 1059, 1368
DpnII GATC 5 cut(s) 409, 889, 929, 1057, 1366
DraIII CACNNNGTG 1 cut(s) 1238
EaeI YGGCCR 2 cut(s) 1213, 1720
Eco130I CCWWGG 1 cut(s) 1243
Eco147I AGGCCT 2 cut(s) 958, 1747
Eco47I GGWCC 3 cut(s) 306, 1449, 1523
EcoNI CCTNNNNNAGG 2 cut(s) 545, 1487
EcoRII CCWGG 7 cut(s) 104, 228, 540, 866, 885, 1098, 1337
EcoT14I CCWWGG 1 cut(s) 1243
ErhI CCWWGG 1 cut(s) 1243
FaeI CATG 7 cut(s) 290, 600, 896, 1478, 1580, 1664, 1766
FalI AAGNNNNNCTT 2 cut(s) 690, 722
FaqI GGGAC 3 cut(s) 1149, 1214, 1445
FatI CATG 7 cut(s) 286, 596, 892, 1474, 1576, 1660, 1762
FauNDI CATATG 1 cut(s) 976
Fnu4HI GCNGC 5 cut(s) 417, 420, 663, 684, 1299
FokI GGATG 6 cut(s) 223, 513, 883, 1205, 1370, 1376
Fsp4HI GCNGC 5 cut(s) 417, 420, 663, 684, 1299
FspBI CTAG 3 cut(s) 954, 999, 1631
GluI GCNGC 5 cut(s) 417, 420, 663, 684, 1299
GsuI CTGGAG 2 cut(s) 88, 939
HaeIII GGCC 6 cut(s) 361, 946, 958, 1215, 1722, 1747
HapII CCGG 4 cut(s) 336, 358, 947, 995
Hin1II CATG 7 cut(s) 290, 600, 896, 1478, 1580, 1664, 1766
HindIII AAGCTT 1 cut(s) 704
HinfI GANTC 4 cut(s) 23, 429, 1012, 1759
HpaII CCGG 4 cut(s) 336, 358, 947, 995
HphI GGTGA 6 cut(s) 742, 1076, 1193, 1245, 1562, 1581
Hpy166II GTNNAC 2 cut(s) 523, 1523
Hpy188III TCNNGA 5 cut(s) 933, 1154, 1223, 1259, 1502
Hpy8I GTNNAC 2 cut(s) 523, 1523
Hpy99I CGWCG 1 cut(s) 827
HpyCH4III ACNGT 4 cut(s) 188, 319, 841, 905
HpyCH4IV ACGT 2 cut(s) 1138, 1528
HpyF10VI GCNNNNNNNGC 6 cut(s) 578, 593, 646, 668, 1568, 1719
HpyF3I CTNAG 3 cut(s) 69, 423, 966
HpySE526I ACGT 2 cut(s) 1138, 1528
Hsp92II CATG 7 cut(s) 290, 600, 896, 1478, 1580, 1664, 1766
KroI GCCGGC 1 cut(s) 946
KroNI GCCGGC 1 cut(s) 948
Kzo9I GATC 5 cut(s) 409, 889, 929, 1057, 1366
LmnI GCTCC 3 cut(s) 790, 874, 1381
Lsp1109I GCAGC 4 cut(s) 428, 431, 674, 1310
LweI GCATC 2 cut(s) 959, 971
MaeI CTAG 3 cut(s) 954, 999, 1631
MaeII ACGT 2 cut(s) 1138, 1528
MaeIII GTNAC 3 cut(s) 232, 748, 1587
MalI GATC 5 cut(s) 411, 891, 931, 1059, 1368
MboI GATC 5 cut(s) 409, 889, 929, 1057, 1366
MboII GAAGA 9 cut(s) 18, 131, 359, 810, 868, 1088, 1157, 1400, 1556
MfeI CAATTG 2 cut(s) 237, 761
MflI RGATCY 2 cut(s) 409, 929
MhlI GDGCHC 2 cut(s) 879, 1243
MlsI TGGCCA 1 cut(s) 1722
MluNI TGGCCA 1 cut(s) 1722
MlyI GAGTC 1 cut(s) 1021
MmeI TCCRAC 3 cut(s) 768, 846, 1492
Mox20I TGGCCA 1 cut(s) 1722
MroNI GCCGGC 1 cut(s) 946
MroXI GAANNNNTTC 1 cut(s) 396
MscI TGGCCA 1 cut(s) 1722
MseI TTAA 6 cut(s) 155, 219, 473, 609, 645, 1269
Msp20I TGGCCA 1 cut(s) 1722
MspA1I CMGCKG 1 cut(s) 665
MspI CCGG 4 cut(s) 336, 358, 947, 995
MspR9I CCNGG 9 cut(s) 106, 230, 358, 542, 868, 887, 995, 1100, 1339
MunI CAATTG 2 cut(s) 237, 761
MvaI CCWGG 7 cut(s) 106, 230, 542, 868, 887, 1100, 1339
MwoI GCNNNNNNNGC 6 cut(s) 578, 593, 646, 668, 1568, 1719
NaeI GCCGGC 1 cut(s) 948
NciI CCSGG 2 cut(s) 358, 995
NdeI CATATG 1 cut(s) 976
NdeII GATC 5 cut(s) 409, 889, 929, 1057, 1366
NgoMIV GCCGGC 1 cut(s) 946
NlaIII CATG 7 cut(s) 290, 600, 896, 1478, 1580, 1664, 1766
NlaIV GGNNCC 3 cut(s) 411, 670, 937
NmuCI GTSAC 2 cut(s) 748, 1587
NspI RCATGY 1 cut(s) 290
PceI AGGCCT 2 cut(s) 958, 1747
PdiI GCCGGC 1 cut(s) 948
PdmI GAANNNNTTC 1 cut(s) 396
PfeI GAWTC 3 cut(s) 23, 429, 1759
PflMI CCANNNNNTGG 1 cut(s) 716
PfoI TCCNGGA 3 cut(s) 104, 866, 1098
PkrI GCNGC 5 cut(s) 418, 421, 664, 685, 1300
PleI GAGTC 1 cut(s) 1020
PpsI GAGTC 1 cut(s) 1020
Psp6I CCWGG 7 cut(s) 104, 228, 540, 866, 885, 1098, 1337
PspGI CCWGG 7 cut(s) 104, 228, 540, 866, 885, 1098, 1337
PspN4I GGNNCC 3 cut(s) 411, 670, 937
PspPI GGNCC 3 cut(s) 306, 1449, 1523
PstI CTGCAG 1 cut(s) 418
PsuI RGATCY 2 cut(s) 409, 929
PvuII CAGCTG 1 cut(s) 665
RsaI GTAC 8 cut(s) 98, 190, 225, 522, 838, 925, 1537, 1752
RsaNI GTAC 8 cut(s) 97, 189, 224, 521, 837, 924, 1536, 1751
SaqAI TTAA 6 cut(s) 155, 219, 473, 609, 645, 1269
SatI GCNGC 5 cut(s) 417, 420, 663, 684, 1299
Sau3AI GATC 5 cut(s) 409, 889, 929, 1057, 1366
Sau96I GGNCC 3 cut(s) 306, 1449, 1523
ScaI AGTACT 1 cut(s) 1537
SchI GAGTC 1 cut(s) 1021
ScrFI CCNGG 9 cut(s) 106, 230, 358, 542, 868, 887, 995, 1100, 1339
SduI GDGCHC 2 cut(s) 879, 1243
SfaNI GCATC 2 cut(s) 959, 971
SfcI CTRYAG 4 cut(s) 58, 414, 840, 1027
SinI GGWCC 3 cut(s) 306, 1449, 1523
SmlI CTYRAG 2 cut(s) 940, 1257
SmoI CTYRAG 2 cut(s) 940, 1257
SseBI AGGCCT 2 cut(s) 958, 1747
SsiI CCGC 1 cut(s) 684
SspMI CTAG 3 cut(s) 954, 999, 1631
StuI AGGCCT 2 cut(s) 958, 1747
StyD4I CCNGG 9 cut(s) 104, 228, 356, 540, 866, 885, 993, 1098, 1337
StyI CCWWGG 1 cut(s) 1243
TaaI ACNGT 4 cut(s) 188, 319, 841, 905
TaiI ACGT 2 cut(s) 1141, 1531
TaqI TCGA 3 cut(s) 1074, 1278, 1501
TatI WGTACW 4 cut(s) 188, 520, 1535, 1750
TauI GCSGC 1 cut(s) 686
TfiI GAWTC 3 cut(s) 23, 429, 1759
Tru1I TTAA 6 cut(s) 155, 219, 473, 609, 645, 1269
Tru9I TTAA 6 cut(s) 155, 219, 473, 609, 645, 1269
TscAI CASTG 3 cut(s) 324, 1330, 1732
TseFI GTSAC 2 cut(s) 748, 1587
TseI GCWGC 4 cut(s) 416, 419, 662, 1298
Tsp45I GTSAC 2 cut(s) 748, 1587
TspDTI ATGAA 6 cut(s) 389, 405, 465, 813, 1475, 1593
TspGWI ACGGA 3 cut(s) 519, 630, 1575
TspRI CASTG 3 cut(s) 324, 1330, 1732
Van91I CCANNNNNTGG 1 cut(s) 716
VpaK11BI GGWCC 3 cut(s) 306, 1449, 1523
XagI CCTNNNNNAGG 2 cut(s) 545, 1487
XapI RAATTY 4 cut(s) 124, 560, 601, 1580
XceI RCATGY 1 cut(s) 290
XcmI CCANNNNNNNNNTGG 1 cut(s) 662
XmnI GAANNNNTTC 1 cut(s) 396
XspI CTAG 3 cut(s) 954, 999, 1631
ZrmI AGTACT 1 cut(s) 1537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.